Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001761.1

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Forward (+)

1699 .. 3998

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001761.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgggaaggaagaagggagtggcggacttcgacgagtcgccgccggatgacttcgatccggcgaatccgtacaaggacccggtggcgatgctggagatgagggagcacatcgtccgagagaagtggatccaaatagagaaggccaagattctccgggacaagctccgctggtgctaccgcgtcgaaggcatcaaccacctccagaagtgccgcctcctccgcgaccagtacctcgagtccacgcgcggcatcggttggggcaaggaccaccgcccctacgagttccatgcacgaagccctaaccctgaaacaaatagccaaaccctgattcaggaagctaaaaaccttgaatccgaatacaaaaccttgaagccttttctgcctccacctcacaccttgaagaactcgatcccaggagtccaggaccgaaaaccggcagaagaagaaaagaagaaaagaagcaaagaagaagaaagagagaagaaaagaaggcccagaaggccagaaggccagaagcccaagcccactgacgcagaccccactgccacgtcagcaccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

186

Amino Acids

21.82

Weight (kDa)

9.41

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	180, 222, 244, 246
AciI	CCGC	8 cut(s)	23, 41, 166, 178, 211, 220, 246, 271
AclWI	GGATC	4 cut(s)	50, 121, 134, 403
AfaI	GTAC	2 cut(s)	71, 230
AfiI	CCNNNNNNNGG	2 cut(s)	331, 433
AgsI	TTSAA	3 cut(s)	350, 370, 400
AjiI	CACGTC	1 cut(s)	549
AjnI	CCWGG	2 cut(s)	412, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	2 cut(s)	163, 338
AluI	AGCT	2 cut(s)	163, 338
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	4 cut(s)	50, 121, 134, 403
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	4 cut(s)	141, 491, 500, 508
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	4 cut(s)	76, 265, 424, 492
AsuC2I	CCSGG	2 cut(s)	80, 155
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	76, 265, 424
BamHI	GGATCC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	414, 422
BcnI	CCSGG	2 cut(s)	80, 155
BglI	GCCNNNNNGGC	1 cut(s)	499
BisI	GCNGC	3 cut(s)	41, 211, 247
BlsI	GCNGC	3 cut(s)	42, 212, 248
Bme1390I	CCNGG	4 cut(s)	80, 155, 414, 422
Bme18I	GGWCC	3 cut(s)	76, 265, 424
BmeT110I	CYCGRG	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	549
BmgT120I	GGNCC	4 cut(s)	76, 265, 424, 492
BmiI	GGNNCC	2 cut(s)	78, 128
BmrFI	CCNGG	4 cut(s)	80, 155, 414, 422
BmsI	GCATC	3 cut(s)	78, 198, 258
BpmI	CTGGAG	2 cut(s)	113, 185
BpuMI	CCSGG	2 cut(s)	80, 155
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 433
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	414, 422
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	331, 433
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	206
Bsh1236I	CGCG	4 cut(s)	180, 222, 244, 246
BshFI	GGCC	4 cut(s)	143, 493, 502, 510
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	5 cut(s)	44, 59, 80, 154, 434
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	331, 433
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	4 cut(s)	143, 493, 502, 510
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	55, 126, 408
BspACI	CCGC	8 cut(s)	23, 41, 166, 178, 211, 220, 246, 271
BspANI	GGCC	4 cut(s)	143, 493, 502, 510
BspFNI	CGCG	4 cut(s)	180, 222, 244, 246
BspLI	GGNNCC	2 cut(s)	78, 128
BspPI	GGATC	4 cut(s)	50, 121, 134, 403
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	3 cut(s)	55, 126, 408
Bst2UI	CCWGG	2 cut(s)	414, 422
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	4 cut(s)	180, 222, 244, 246
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	3 cut(s)	58, 129, 411
BstMBI	GATC	3 cut(s)	55, 126, 408
BstMWI	GCNNNNNNNGC	5 cut(s)	186, 219, 379, 499, 551
BstNI	CCWGG	2 cut(s)	414, 422
BstSCI	CCNGG	4 cut(s)	78, 153, 412, 420
BstUI	CGCG	4 cut(s)	180, 222, 244, 246
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	4 cut(s)	143, 493, 502, 510
BtgZI	GCGATG	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	525, 540
CfoI	GCGC	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	4 cut(s)	76, 265, 424, 492
CseI	GACGC	2 cut(s)	169, 539
Csp6I	GTAC	2 cut(s)	70, 229
CviAII	CATG	1 cut(s)	287
CviQI	GTAC	2 cut(s)	70, 229
DpnI	GATC	3 cut(s)	57, 128, 410
DpnII	GATC	3 cut(s)	55, 126, 408
EciI	GGCGGA	1 cut(s)	38
Eco47I	GGWCC	3 cut(s)	76, 265, 424
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	412, 420
FaeI	CATG	1 cut(s)	290
FaiI	YATR	1 cut(s)	288
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	41, 211, 247
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	41, 211, 247
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	41, 211, 247
GsuI	CTGGAG	2 cut(s)	113, 185
HaeIII	GGCC	4 cut(s)	143, 493, 502, 510
HapII	CCGG	5 cut(s)	44, 59, 80, 154, 434
HgaI	GACGC	2 cut(s)	169, 539
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	7 cut(s)	35, 64, 148, 236, 328, 350, 417
HpaII	CCGG	5 cut(s)	44, 59, 80, 154, 434
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	116, 355
Hpy188III	TCNNGA	2 cut(s)	202, 332
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	2 cut(s)	35, 185
HpyAV	CCTTC	6 cut(s)	7, 133, 179, 483, 492, 500
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	5 cut(s)	186, 219, 379, 499, 551
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	55, 126, 408
LmnI	GCTCC	2 cut(s)	103, 168
LweI	GCATC	3 cut(s)	78, 198, 258
MaeII	ACGT	1 cut(s)	548
MalI	GATC	3 cut(s)	57, 128, 410
MboI	GATC	3 cut(s)	55, 126, 408
MboII	GAAGA	8 cut(s)	22, 412, 452, 455, 463, 479, 482, 493
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	44, 245, 426
MnlI	CCTC	7 cut(s)	93, 209, 224, 227, 242, 393, 399
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	5 cut(s)	44, 59, 80, 154, 434
MspR9I	CCNGG	4 cut(s)	80, 155, 414, 422
MvaI	CCWGG	2 cut(s)	414, 422
MvnI	CGCG	4 cut(s)	180, 222, 244, 246
MwoI	GCNNNNNNNGC	5 cut(s)	186, 219, 379, 499, 551
NciI	CCSGG	2 cut(s)	80, 155
NdeII	GATC	3 cut(s)	55, 126, 408
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	78, 128
PaeR7I	CTCGAG	1 cut(s)	233
PfeI	GAWTC	4 cut(s)	64, 148, 328, 350
PfoI	TCCNGGA	2 cut(s)	153, 420
PkrI	GCNGC	3 cut(s)	42, 212, 248
PleI	GAGTC	3 cut(s)	43, 244, 425
PpsI	GAGTC	3 cut(s)	43, 244, 425
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	412, 420
PspGI	CCWGG	2 cut(s)	412, 420
PspN4I	GGNNCC	2 cut(s)	78, 128
PspPI	GGNCC	4 cut(s)	76, 265, 424, 492
PspPPI	RGGWCCY	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	2 cut(s)	71, 230
RsaNI	GTAC	2 cut(s)	70, 229
SatI	GCNGC	3 cut(s)	41, 211, 247
Sau3AI	GATC	3 cut(s)	55, 126, 408
Sau96I	GGNCC	4 cut(s)	76, 265, 424, 492
SchI	GAGTC	3 cut(s)	44, 245, 426
ScrFI	CCNGG	4 cut(s)	80, 155, 414, 422
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	9 cut(s)	165, 201, 234, 340, 348, 368, 391, 398, 551
SfaNI	GCATC	3 cut(s)	78, 198, 258
SfiI	GGCCNNNNNGGCC	1 cut(s)	499
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	3 cut(s)	76, 265, 424
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	8 cut(s)	23, 41, 166, 178, 211, 220, 246, 271
StyD4I	CCNGG	4 cut(s)	78, 153, 412, 420
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	5 cut(s)	30, 54, 183, 234, 407
TaqII	GACCGA	1 cut(s)	441
TauI	GCSGC	3 cut(s)	43, 213, 249
TfiI	GAWTC	4 cut(s)	64, 148, 328, 350
TscAI	CASTG	2 cut(s)	532, 547
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	532, 547
VpaK11BI	GGWCC	3 cut(s)	76, 265, 424
XagI	CCTNNNNNAGG	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.