Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Reverse (-)

30787068 .. 30790350

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1226500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGGCGGAAGAAGGGAGTGGTGGACTTCGACGAGTCGCCGCCGGACGACTTCGATCCGGCGAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACTTGGTGCGGGAGAAGTGGATCGACATCGAGAAGGCCAAGATCATCAGGGAGAAACTCCGGTGGTGCTACCGCATCGAAGGCGTTAACCACCTCCAGAAGTGCCGCCACCTCGTCCACCAGTACCTCGAGTCCACTCGCGGCATCGGTTGGGGGAAGGACCACCGTCCTTACGAGTTCCATGGTCCGCCAGCGTCCGAAGCCGGAGCCGGTGGAGTCCGAGTGATCGGTTTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

115

Amino Acids

13.27

Weight (kDa)

8.59

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AciI	CCGC	7 cut(s)	7, 41, 115, 178, 211, 246, 293
AclWI	GGATC	2 cut(s)	50, 134
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	2 cut(s)	71, 230
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	50, 134
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	141
AspS9I	GGNCC	3 cut(s)	76, 265, 290
AsuC2I	CCSGG	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	76, 265, 290
Bbv12I	GWGCWC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	80
BisI	GCNGC	3 cut(s)	41, 211, 247
BlsI	GCNGC	3 cut(s)	42, 212, 248
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	3 cut(s)	76, 265, 290
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	76, 265, 290
BmiI	GGNNCC	2 cut(s)	78, 313
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	78, 189, 258
BoxI	GACNNNNGTC	1 cut(s)	270
BpmI	CTGGAG	2 cut(s)	113, 185
BpuMI	CCSGG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	6 cut(s)	44, 59, 80, 166, 309, 315
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	55, 126, 147, 330
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	7 cut(s)	7, 41, 115, 178, 211, 246, 293
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	78, 313
BspPI	GGATC	2 cut(s)	50, 134
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	4 cut(s)	55, 126, 147, 330
BssT1I	CCWWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	4 cut(s)	58, 129, 150, 333
BstMBI	GATC	4 cut(s)	55, 126, 147, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 186, 305
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	76, 265, 290
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	70, 229
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	3 cut(s)	143, 308, 314
CviKI_1	RGCY	3 cut(s)	143, 308, 314
CviQI	GTAC	2 cut(s)	70, 229
DpnI	GATC	4 cut(s)	57, 128, 149, 332
DpnII	GATC	4 cut(s)	55, 126, 147, 330
DraIII	CACNNNGTG	1 cut(s)	112
EciI	GGCGGA	2 cut(s)	22, 282
Eco130I	CCWWGG	1 cut(s)	286
Eco47I	GGWCC	3 cut(s)	76, 265, 290
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	290
FaiI	YATR	1 cut(s)	288
FatI	CATG	1 cut(s)	286
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	41, 211, 247
Fsp4HI	GCNGC	3 cut(s)	41, 211, 247
GluI	GCNGC	3 cut(s)	41, 211, 247
GsuI	CTGGAG	2 cut(s)	113, 185
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	6 cut(s)	44, 59, 80, 166, 309, 315
HgaI	GACGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	35, 64, 236, 321
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	6 cut(s)	44, 59, 80, 166, 309, 315
Hpy166II	GTNNAC	4 cut(s)	25, 193, 223, 240
Hpy188I	TCNGA	2 cut(s)	304, 326
Hpy188III	TCNNGA	2 cut(s)	136, 202
Hpy8I	GTNNAC	4 cut(s)	25, 193, 223, 240
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	7, 133, 179, 256
HpyCH4III	ACNGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 186, 305
Hsp92II	CATG	1 cut(s)	290
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	55, 126, 147, 330
LmnI	GCTCC	2 cut(s)	103, 311
LweI	GCATC	3 cut(s)	78, 189, 258
MalI	GATC	4 cut(s)	57, 128, 149, 332
MboI	GATC	4 cut(s)	55, 126, 147, 330
MboII	GAAGA	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	44, 245, 330
MnlI	CCTC	4 cut(s)	93, 209, 227, 242
MseI	TTAA	1 cut(s)	192
MspI	CCGG	6 cut(s)	44, 59, 80, 166, 309, 315
MspR9I	CCNGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	112, 186, 305
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	4 cut(s)	55, 126, 147, 330
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	78, 313
PaeR7I	CTCGAG	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	42, 212, 248
PleI	GAGTC	3 cut(s)	43, 244, 329
PpsI	GAGTC	3 cut(s)	43, 244, 329
PpuMI	RGGWCCY	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	78, 313
PspPI	GGNCC	3 cut(s)	76, 265, 290
PspPPI	RGGWCCY	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	233
RsaI	GTAC	2 cut(s)	71, 230
RsaNI	GTAC	2 cut(s)	70, 229
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	41, 211, 247
Sau3AI	GATC	4 cut(s)	55, 126, 147, 330
Sau96I	GGNCC	3 cut(s)	76, 265, 290
SchI	GAGTC	3 cut(s)	44, 245, 330
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	4 cut(s)	201, 219, 234, 344
SfaNI	GCATC	3 cut(s)	78, 189, 258
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	3 cut(s)	76, 265, 290
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	7 cut(s)	7, 41, 115, 178, 211, 246, 293
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	6 cut(s)	30, 54, 129, 135, 183, 234
TauI	GCSGC	3 cut(s)	43, 213, 249
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	3 cut(s)	76, 265, 290
XhoI	CTCGAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.