Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Reverse (-)

23237748 .. 23238182

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G218000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGGAAGGAGAAAGGGAGTTGTGAACTTTGACGAGTCACCGCCGGATGACTTTGATCCGGCGAATCCGTACATGTACCCGAAGTGGATCGACATCGTCAACCACCTCCAGAAGTGCCGCCACCTCGTCCACCAGTACCTCGAGTCCACTCGTGGCATTGGTTGGGGCAAGGACCATCGTCCTCTTGAGTTCCATGGTCCTAAGGTGGAGGCTCTCTCAATTTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0006119 GO:0006120 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009853 GO:0009987 GO:0010257 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032981 GO:0032991 GO:0033108 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0046034 GO:0046483 GO:0050136 GO:0055086 GO:0055114 GO:0065003 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

77

Amino Acids

8.87

Weight (kDa)

6.5

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 118
AclWI	GGATC	2 cut(s)	50, 95
AfaI	GTAC	3 cut(s)	71, 77, 137
AflIII	ACRYGT	1 cut(s)	72
AlwI	GGATC	2 cut(s)	50, 95
Ama87I	CYCGRG	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	172, 197
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	172, 197
AxyI	CCTNAGG	1 cut(s)	201
BauI	CACGAG	1 cut(s)	150
BccI	CCATC	1 cut(s)	183
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	172, 197
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	172, 197
BoxI	GACNNNNGTC	1 cut(s)	177
BplI	GAGNNNNNCTC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	44, 59
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	55, 87
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	2 cut(s)	41, 118
BspPI	GGATC	2 cut(s)	50, 95
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	55, 87
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	58, 90
BstMBI	GATC	2 cut(s)	55, 87
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	172, 197
Csp6I	GTAC	3 cut(s)	70, 76, 136
CviAII	CATG	2 cut(s)	73, 194
CviJI	RGCY	1 cut(s)	212
CviKI_1	RGCY	1 cut(s)	212
CviQI	GTAC	3 cut(s)	70, 76, 136
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	57, 89
DpnII	GATC	2 cut(s)	55, 87
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	172, 197
Eco81I	CCTNAGG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	76, 197
FaiI	YATR	2 cut(s)	74, 195
FatI	CATG	2 cut(s)	72, 193
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	92
HapII	CCGG	2 cut(s)	44, 59
Hin1II	CATG	2 cut(s)	76, 197
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	35, 64, 143
HpaII	CCGG	2 cut(s)	44, 59
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	4 cut(s)	25, 100, 130, 147
Hpy188III	TCNNGA	2 cut(s)	109, 185
Hpy8I	GTNNAC	4 cut(s)	25, 100, 130, 147
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	76, 197
Kzo9I	GATC	2 cut(s)	55, 87
LpnPI	CCDG	4 cut(s)	57, 72, 122, 146
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	2 cut(s)	57, 89
MboI	GATC	2 cut(s)	55, 87
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	44, 152
MnlI	CCTC	5 cut(s)	116, 134, 149, 192, 202
MspI	CCGG	2 cut(s)	44, 59
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	55, 87
NlaIII	CATG	2 cut(s)	76, 197
NmuCI	GTSAC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	140
PciI	ACATGT	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	2 cut(s)	43, 151
PpsI	GAGTC	2 cut(s)	43, 151
PscI	ACATGT	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	172, 197
PspXI	VCTCGAGB	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	3 cut(s)	71, 77, 137
RsaNI	GTAC	3 cut(s)	70, 76, 136
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	55, 87
Sau96I	GGNCC	2 cut(s)	172, 197
SchI	GAGTC	2 cut(s)	44, 152
SetI	ASST	4 cut(s)	108, 126, 141, 207
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	172, 197
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	140, 185
SmoI	CTYRAG	2 cut(s)	140, 185
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	2 cut(s)	41, 118
StyI	CCWWGG	1 cut(s)	193
TaqI	TCGA	2 cut(s)	90, 141
TasI	AATT	1 cut(s)	219
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	57
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	172, 197
XceI	RCATGY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.