Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Reverse (-)

30269820 .. 30270047

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1306200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGGCGGAAGAAGGGAGTGGTGGACTTCGACAAGTCGTCACCGGATGACTTCGATCTAGCGAATTCGTACAAGGACCCGGTGGTGATGCTGGAGATCAAGGAACACTTGGTGCAGGAGAAGTGGATCGACATCGAGAAGGCCAAGATCATTAGGGAGAAACTTCGGTGGTGCTACTGCATCAAAGGCATCAACCACCTCCAGAAGTGCTGCCACCTCGTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

76

Amino Acids

8.88

Weight (kDa)

8.37

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	64
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	71
AhdI	GACNNNNNGTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	33, 97
AvaII	GGWCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	2 cut(s)	59, 226
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	76
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	78, 189, 198
BpmI	CTGGAG	2 cut(s)	113, 185
BpuMI	CCSGG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	131
BsaWI	WCCGGW	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	131
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	44, 80
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	4 cut(s)	55, 96, 126, 147
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	134
BssMI	GATC	4 cut(s)	55, 96, 126, 147
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	4 cut(s)	58, 99, 129, 150
BstMBI	GATC	4 cut(s)	55, 96, 126, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	1 cut(s)	143
CviKI_1	RGCY	1 cut(s)	143
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	4 cut(s)	57, 98, 128, 149
DpnII	GATC	4 cut(s)	55, 96, 126, 147
DraIII	CACNNNGTG	1 cut(s)	112
DriI	GACNNNNNGTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	64
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	2 cut(s)	59, 226
GluI	GCNGC	1 cut(s)	211
GsuI	CTGGAG	2 cut(s)	113, 185
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	2 cut(s)	44, 80
HpaII	CCGG	2 cut(s)	44, 80
HphI	GGTGA	2 cut(s)	33, 97
Hpy166II	GTNNAC	2 cut(s)	25, 223
Hpy188III	TCNNGA	2 cut(s)	136, 202
Hpy8I	GTNNAC	2 cut(s)	25, 223
HpyAV	CCTTC	2 cut(s)	7, 133
HpyCH4V	TGCA	2 cut(s)	115, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	55, 96, 126, 147
LpnPI	CCDG	5 cut(s)	57, 77, 93, 101, 215
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	3 cut(s)	78, 189, 198
MaeI	CTAG	2 cut(s)	59, 226
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	4 cut(s)	57, 98, 128, 149
MboI	GATC	4 cut(s)	55, 96, 126, 147
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	1 cut(s)	64
MnlI	CCTC	2 cut(s)	209, 227
MspI	CCGG	2 cut(s)	44, 80
MspR9I	CCNGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	4 cut(s)	55, 96, 126, 147
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	4 cut(s)	55, 96, 126, 147
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	2 cut(s)	201, 219
SfaNI	GCATC	3 cut(s)	78, 189, 198
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	59, 226
StyD4I	CCNGG	1 cut(s)	78
TaqI	TCGA	4 cut(s)	30, 54, 129, 135
TasI	AATT	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	64
XspI	CTAG	2 cut(s)	59, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.