Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030883.1

Orthogroup ID

OG0006266

Physical Location & Seq

Genomic Coordinates Forward (+)

1674 .. 2349

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030883.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgggaaggaagaagggagtggcggacttcgacgagtcgccgccggatgacttcgatccggcgaatccgtacaaggacccggtggcgatgctggagatgagggagcacatcgtccgagagaagtggatccaaatagagaaggccaagattctccgggacaagctccgctggtgctaccgcgtcgaaggcatcaaccacctccagaagtgccgcctcctccgcgaccagtacctcgagtccacgcgcggcatcggttggggcaaggaccaccgcccctacgagtatgatccagataggcttccagatggactgaatactagatcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUFB10

Protein Analysis

109

Amino Acids

12.98

Weight (kDa)

7.78

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49140 AT1G49140 AT3G18410 AT3G18410
fragaria_vesca	FvH4_5g12140
malus_domestica	MD06G1215900.v1.1 MD14G1197200.v1.1 MD14G1226500.v1.1 MD15G1306200.v1.1
prunus_persica	Prupe.1G218000_v2.0.a1 Prupe.2G045100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1 Prupe.5G221100_v2.0.a1
pyrus_communis	pycom14g18790
rosa_chinensis	RchiOBHm_Chr7g0185431
rosa_laevigata	RLG00000004914
rosa_multiflora	Rmu_sc0001761.1_g000002 Rmu_sc0030883.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268950
rosa_rugosa	Rorug06G0469000
rosa_samantha	Rh7AG073800 Rh7BG073900 Rh7CG074000 Rh7DG074000
rosa_wichuraiana	Rw7G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	180, 222, 244, 246
AciI	CCGC	8 cut(s)	23, 41, 166, 178, 211, 220, 246, 271
AclWI	GGATC	4 cut(s)	50, 121, 134, 281
AfaI	GTAC	2 cut(s)	71, 230
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	4 cut(s)	50, 121, 134, 281
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	76, 265
AsuC2I	CCSGG	2 cut(s)	80, 155
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	76, 265
BamHI	GGATCC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	108
BccI	CCATC	1 cut(s)	299
BcnI	CCSGG	2 cut(s)	80, 155
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	3 cut(s)	41, 211, 247
BlsI	GCNGC	3 cut(s)	42, 212, 248
Bme1390I	CCNGG	2 cut(s)	80, 155
Bme18I	GGWCC	2 cut(s)	76, 265
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	76, 265
BmiI	GGNNCC	2 cut(s)	78, 128
BmrFI	CCNGG	2 cut(s)	80, 155
BmsI	GCATC	3 cut(s)	78, 198, 258
BpmI	CTGGAG	2 cut(s)	113, 185
BpuMI	CCSGG	2 cut(s)	80, 155
Bse1I	ACTGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	206
Bsh1236I	CGCG	4 cut(s)	180, 222, 244, 246
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	4 cut(s)	44, 59, 80, 154
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	55, 126, 286, 320
BspACI	CCGC	8 cut(s)	23, 41, 166, 178, 211, 220, 246, 271
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	4 cut(s)	180, 222, 244, 246
BspLI	GGNNCC	2 cut(s)	78, 128
BspPI	GGATC	4 cut(s)	50, 121, 134, 281
BsrI	ACTGG	1 cut(s)	226
BssMI	GATC	4 cut(s)	55, 126, 286, 320
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	4 cut(s)	180, 222, 244, 246
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	4 cut(s)	58, 129, 289, 323
BstMBI	GATC	4 cut(s)	55, 126, 286, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 219
BstSCI	CCNGG	2 cut(s)	78, 153
BstUI	CGCG	4 cut(s)	180, 222, 244, 246
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	76, 265
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	70, 229
CviJI	RGCY	3 cut(s)	143, 163, 298
CviKI_1	RGCY	3 cut(s)	143, 163, 298
CviQI	GTAC	2 cut(s)	70, 229
DpnI	GATC	4 cut(s)	57, 128, 288, 322
DpnII	GATC	4 cut(s)	55, 126, 286, 320
EciI	GGCGGA	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	76, 265
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	76
FaiI	YATR	1 cut(s)	285
FaqI	GGGAC	1 cut(s)	170
Fnu4HI	GCNGC	3 cut(s)	41, 211, 247
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	41, 211, 247
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	41, 211, 247
GsuI	CTGGAG	2 cut(s)	113, 185
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	4 cut(s)	44, 59, 80, 154
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	4 cut(s)	35, 64, 148, 236
HpaII	CCGG	4 cut(s)	44, 59, 80, 154
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	3 cut(s)	202, 290, 302
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	2 cut(s)	35, 185
HpyAV	CCTTC	3 cut(s)	7, 133, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 219
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	55, 126, 286, 320
LmnI	GCTCC	2 cut(s)	103, 168
LweI	GCATC	3 cut(s)	78, 198, 258
MaeI	CTAG	1 cut(s)	318
MalI	GATC	4 cut(s)	57, 128, 288, 322
MboI	GATC	4 cut(s)	55, 126, 286, 320
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	44, 245
MnlI	CCTC	5 cut(s)	93, 209, 224, 227, 242
MseI	TTAA	1 cut(s)	328
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	4 cut(s)	44, 59, 80, 154
MspR9I	CCNGG	2 cut(s)	80, 155
MvnI	CGCG	4 cut(s)	180, 222, 244, 246
MwoI	GCNNNNNNNGC	2 cut(s)	186, 219
NciI	CCSGG	2 cut(s)	80, 155
NdeII	GATC	4 cut(s)	55, 126, 286, 320
NlaIV	GGNNCC	2 cut(s)	78, 128
PaeR7I	CTCGAG	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	64, 148
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	42, 212, 248
PleI	GAGTC	2 cut(s)	43, 244
PpsI	GAGTC	2 cut(s)	43, 244
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	78, 128
PspPI	GGNCC	2 cut(s)	76, 265
PspPPI	RGGWCCY	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	2 cut(s)	71, 230
RsaNI	GTAC	2 cut(s)	70, 229
SaqAI	TTAA	1 cut(s)	328
SatI	GCNGC	3 cut(s)	41, 211, 247
Sau3AI	GATC	4 cut(s)	55, 126, 286, 320
Sau96I	GGNCC	2 cut(s)	76, 265
SchI	GAGTC	2 cut(s)	44, 245
ScrFI	CCNGG	2 cut(s)	80, 155
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	3 cut(s)	165, 201, 234
SfaNI	GCATC	3 cut(s)	78, 198, 258
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	76, 265
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	8 cut(s)	23, 41, 166, 178, 211, 220, 246, 271
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	78, 153
TaqI	TCGA	4 cut(s)	30, 54, 183, 234
TauI	GCSGC	3 cut(s)	43, 213, 249
TfiI	GAWTC	2 cut(s)	64, 148
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	76, 265
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.