AT1G49610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016476
Physical Location & Seq
Reverse (-)
18361679 .. 18363192
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49610.1

Sequence Viewer

Length: 1065 bp
ATGGCGCTCGACGGCGAGAACAGAGACGGTGGCTCCGCCTCCGTGAGAGTCCTCAAGCATTGCCTCGAAGATGTAGACTCAATAAGCTCTTTGCCTGATGTGATCCTCCAAGAAAACCTCTCCTTAATTCCGACCAAATTCGCCATAAGAACATCGGTCTTGTCCAAACGATGGAGGCATGTTTGGTCCGAAACACCTTCCCTCGACTTCGATGATTGCTATAAACTAGATGTTGATTTTATAGACAAAACCCTAGCTCTCTACAGGGCTCGCAAGATTATGACTTTTGACCTCTGGATCACCAACGGAATCAATCTTCCTTACATTGATGGATGGATCAAGTTCGCCATGTCCCGAAACGTGGAGAATCTGTTTCTGAGTTTCGATTTTCGGTTATATGATGTTCCTGATTACTTGTACATCAATTCCTCTGTCAAGCAACTCTCCATTGCTAAGATTCTTTCTGGTTGTCCGATTATCGAAAGCTTAACATTGCATTTTTGTGATCAACTGATGGTTCTTGATCTCACCAAATCACCGAGTTTGAAAATATTGGAAATCCATGGTAGCATTTGGGCTAAAGTAGACATTTGCTTTTGCTCACTTAAAGAGATAAAGGCTAATTTCCTTCTCGACACGGTGCTCAAGTGTCTTTACAAGTTGCAGAATGTAGACAAGCTTACCTTTGGGGCAAACTTTCTTAAGGGCCGCGGTCTTCCTTTTCCGATGTTCAAGGCTAAAGCTTTGACTCTCGAGACAACGATCTCTAAATACGTTATTCCTGTACAGGGTGAGTATGATCCCACGTACTTGCGTTGCATGAAGCTGGATCATTGCTCGATCTTTGCAAAGATTTCCCGTCGGAATGTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGATTAAAACCACAAAGAAATTAGAGAAGATGGTCGTAAGGTTGGAAAGTTATCTTGATGGAAGAGGTTTCGAAGAATTGCTTGAGATGGTTCCAATGCTTTCTCAAAACAACAATGTCTCCATTGTGCTTAGCTCAACCAAGCCGAGACAGAGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

354

Amino Acids

40.53

Weight (kDa)

8.45

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 171
AccI GTMKAC 3 cut(s) 75, 585, 672
AccII CGCG 1 cut(s) 711
AciI CCGC 3 cut(s) 36, 709, 711
AclWI GGATC 5 cut(s) 97, 305, 344, 794, 837
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 3 cut(s) 419, 786, 809
AfiI CCNNNNNNNGG 3 cut(s) 171, 361, 788
AflII CTTAAG 1 cut(s) 701
AgsI TTSAA 2 cut(s) 547, 733
AluBI AGCT 7 cut(s) 87, 257, 486, 679, 743, 826, 1038
AluI AGCT 7 cut(s) 87, 257, 486, 679, 743, 826, 1038
Alw21I GWGCWC 1 cut(s) 645
Alw26I GTCTC 4 cut(s) 18, 749, 1027, 1045
AlwI GGATC 5 cut(s) 97, 305, 344, 794, 837
Ama87I CYCGRG 1 cut(s) 752
AoxI GGCC 1 cut(s) 706
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 186, 706
AsuHPI GGTGA 4 cut(s) 292, 520, 528, 803
AsuII TTCGAA 1 cut(s) 975
AvaI CYCGRG 1 cut(s) 752
AvaII GGWCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 707
Bbv12I GWGCWC 1 cut(s) 645
BccI CCATC 7 cut(s) 165, 323, 327, 508, 928, 956, 985
BceAI ACGGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 4 cut(s) 18, 749, 1027, 1045
BfaI CTAG 2 cut(s) 227, 254
BfmI CTRYAG 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 701
BisI GCNGC 1 cut(s) 709
BlpI GCTNAGC 1 cut(s) 1034
BlsI GCNGC 1 cut(s) 710
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 752
BmgT120I GGNCC 2 cut(s) 186, 706
BmiI GGNNCC 2 cut(s) 34, 996
BpiI GAAGAC 1 cut(s) 707
Bpu1102I GCTNAGC 1 cut(s) 1034
Bpu14I TTCGAA 1 cut(s) 975
BpuEI CTTGAG 3 cut(s) 38, 629, 1007
BsaAI YACGTR 1 cut(s) 807
BsaJI CCNNGG 2 cut(s) 562, 709
BsaXI ACNNNNNCTCC 6 cut(s) 17, 47, 356, 386, 1007, 1037
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 361, 788
Bse3DI GCAATG 4 cut(s) 58, 447, 491, 832
BseDI CCNNGG 2 cut(s) 562, 709
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 3 cut(s) 171, 361, 788
BseMI GCAATG 4 cut(s) 58, 447, 491, 832
BseMII CTCAG 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 711
BshFI GGCC 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 752
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 3 cut(s) 171, 361, 788
BsmAI GTCTC 4 cut(s) 18, 749, 1027, 1045
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 1 cut(s) 708
BsoBI CYCGRG 1 cut(s) 752
Bsp119I TTCGAA 1 cut(s) 975
Bsp1286I GDGCHC 2 cut(s) 271, 645
Bsp1407I TGTACA 2 cut(s) 417, 784
Bsp143I GATC 9 cut(s) 102, 297, 336, 505, 523, 762, 799, 829, 840
Bsp1720I GCTNAGC 1 cut(s) 1034
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 3 cut(s) 36, 709, 711
BspANI GGCC 1 cut(s) 708
BspCNI CTCAG 1 cut(s) 369
BspFNI CGCG 1 cut(s) 711
BspLI GGNNCC 2 cut(s) 34, 996
BspPI GGATC 5 cut(s) 97, 305, 344, 794, 837
BspT104I TTCGAA 1 cut(s) 975
BspTI CTTAAG 1 cut(s) 701
BsrDI GCAATG 4 cut(s) 58, 447, 491, 832
BsrGI TGTACA 2 cut(s) 417, 784
BssECI CCNNGG 2 cut(s) 562, 709
BssMI GATC 9 cut(s) 102, 297, 336, 505, 523, 762, 799, 829, 840
BssT1I CCWWGG 1 cut(s) 562
Bst4CI ACNGT 2 cut(s) 29, 640
Bst6I CTCTTC 1 cut(s) 961
BstAFI CTTAAG 1 cut(s) 701
BstAUI TGTACA 2 cut(s) 417, 784
BstBAI YACGTR 1 cut(s) 807
BstBI TTCGAA 1 cut(s) 975
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 3 cut(s) 377, 453, 1034
BstDSI CCRYGG 2 cut(s) 562, 709
BstF5I GGATG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 711
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 9 cut(s) 105, 300, 339, 508, 526, 765, 802, 832, 843
BstMAI GTCTC 4 cut(s) 18, 749, 1027, 1045
BstMBI GATC 9 cut(s) 102, 297, 336, 505, 523, 762, 799, 829, 840
BstNSI RCATGY 2 cut(s) 182, 884
BstSFI CTRYAG 1 cut(s) 262
BstUI CGCG 1 cut(s) 711
BstV2I GAAGAC 1 cut(s) 707
BsuRI GGCC 1 cut(s) 708
BtgI CCRYGG 2 cut(s) 562, 709
BtsCI GGATG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 186, 706
Cfr42I CCGCGG 1 cut(s) 712
Csp6I GTAC 3 cut(s) 418, 785, 808
CspCI CAANNNNNGTGG 2 cut(s) 864, 899
CviAII CATG 6 cut(s) 179, 349, 563, 820, 881, 895
CviQI GTAC 3 cut(s) 418, 785, 808
DdeI CTNAG 3 cut(s) 377, 453, 1034
DpnI GATC 9 cut(s) 104, 299, 338, 507, 525, 764, 801, 831, 842
DpnII GATC 9 cut(s) 102, 297, 336, 505, 523, 762, 799, 829, 840
Eam1104I CTCTTC 1 cut(s) 961
EarI CTCTTC 1 cut(s) 961
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 562
Eco24I GRGCYC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 752
EcoT14I CCWWGG 1 cut(s) 562
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 6 cut(s) 182, 352, 566, 823, 884, 898
FalI AAGNNNNNCTT 4 cut(s) 668, 700, 969, 1001
FaqI GGGAC 1 cut(s) 337
FatI CATG 6 cut(s) 178, 348, 562, 819, 880, 894
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 3 cut(s) 75, 585, 672
Fnu4HI GCNGC 1 cut(s) 709
FokI GGATG 1 cut(s) 345
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 709
FspBI CTAG 2 cut(s) 227, 254
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 709
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 708
HhaI GCGC 1 cut(s) 7
Hin1II CATG 6 cut(s) 182, 352, 566, 823, 884, 898
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 3 cut(s) 484, 677, 741
HinfI GANTC 8 cut(s) 48, 77, 309, 367, 457, 748, 872, 1057
HphI GGTGA 4 cut(s) 292, 520, 528, 803
Hpy166II GTNNAC 3 cut(s) 76, 586, 673
Hpy188I TCNGA 6 cut(s) 132, 190, 378, 474, 726, 864
Hpy188III TCNNGA 8 cut(s) 295, 354, 407, 521, 632, 752, 754, 959
Hpy8I GTNNAC 3 cut(s) 76, 586, 673
Hpy99I CGWCG 2 cut(s) 14, 864
HpyAV CCTTC 2 cut(s) 207, 638
HpyCH4III ACNGT 2 cut(s) 29, 640
HpyCH4IV ACGT 3 cut(s) 360, 774, 806
HpyCH4V TGCA 4 cut(s) 496, 664, 819, 848
HpyF3I CTNAG 3 cut(s) 377, 453, 1034
HpySE526I ACGT 3 cut(s) 360, 774, 806
Hsp92II CATG 6 cut(s) 182, 352, 566, 823, 884, 898
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 505
KspI CCGCGG 1 cut(s) 712
Kzo9I GATC 9 cut(s) 102, 297, 336, 505, 523, 762, 799, 829, 840
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 8 cut(s) 108, 250, 280, 420, 450, 773, 795, 812
MaeI CTAG 2 cut(s) 227, 254
MaeII ACGT 3 cut(s) 360, 774, 806
MalI GATC 9 cut(s) 104, 299, 338, 507, 525, 764, 801, 831, 842
MboI GATC 9 cut(s) 102, 297, 336, 505, 523, 762, 799, 829, 840
MboII GAAGA 6 cut(s) 80, 308, 707, 943, 978, 989
MhlI GDGCHC 2 cut(s) 271, 645
MluCI AATT 6 cut(s) 126, 137, 424, 622, 923, 980
MlyI GAGTC 4 cut(s) 57, 71, 742, 881
MmeI TCCRAC 3 cut(s) 155, 842, 927
MseI TTAA 5 cut(s) 125, 488, 606, 702, 909
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 711
MspCI CTTAAG 1 cut(s) 701
MvnI CGCG 1 cut(s) 711
NcoI CCATGG 1 cut(s) 562
NdeII GATC 9 cut(s) 102, 297, 336, 505, 523, 762, 799, 829, 840
NlaIII CATG 6 cut(s) 182, 352, 566, 823, 884, 898
NlaIV GGNNCC 2 cut(s) 34, 996
NspI RCATGY 2 cut(s) 182, 884
NspV TTCGAA 1 cut(s) 975
PaeR7I CTCGAG 1 cut(s) 752
PfeI GAWTC 3 cut(s) 309, 367, 457
PflFI GACNNNGTC 1 cut(s) 1056
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 1 cut(s) 710
PleI GAGTC 4 cut(s) 56, 71, 742, 880
PpsI GAGTC 4 cut(s) 56, 71, 742, 880
Ppu21I YACGTR 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 34, 996
PspPI GGNCC 2 cut(s) 186, 706
PsyI GACNNNGTC 1 cut(s) 1056
RsaI GTAC 3 cut(s) 419, 786, 809
RsaNI GTAC 3 cut(s) 418, 785, 808
RseI CAYNNNNRTG 1 cut(s) 501
SacII CCGCGG 1 cut(s) 712
SaqAI TTAA 5 cut(s) 125, 488, 606, 702, 909
SatI GCNGC 1 cut(s) 709
Sau3AI GATC 9 cut(s) 102, 297, 336, 505, 523, 762, 799, 829, 840
Sau96I GGNCC 2 cut(s) 186, 706
SchI GAGTC 4 cut(s) 57, 71, 742, 881
SduI GDGCHC 2 cut(s) 271, 645
SfcI CTRYAG 1 cut(s) 262
Sfr274I CTCGAG 1 cut(s) 752
Sfr303I CCGCGG 1 cut(s) 712
SfuI TTCGAA 1 cut(s) 975
SgrBI CCGCGG 1 cut(s) 712
SinI GGWCC 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 5 cut(s) 53, 644, 701, 752, 986
SmoI CTYRAG 5 cut(s) 53, 644, 701, 752, 986
Sse9I AATT 6 cut(s) 126, 137, 424, 622, 923, 980
SsiI CCGC 3 cut(s) 36, 709, 711
SspI AATATT 1 cut(s) 552
SspMI CTAG 2 cut(s) 227, 254
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 2 cut(s) 29, 640
TaiI ACGT 3 cut(s) 363, 777, 809
TaqII GACCGA 1 cut(s) 145
TasI AATT 6 cut(s) 126, 137, 424, 622, 923, 980
TatI WGTACW 2 cut(s) 417, 784
TauI GCSGC 1 cut(s) 711
TfiI GAWTC 3 cut(s) 309, 367, 457
Tru1I TTAA 5 cut(s) 125, 488, 606, 702, 909
Tru9I TTAA 5 cut(s) 125, 488, 606, 702, 909
TspDTI ATGAA 2 cut(s) 836, 883
TspGWI ACGGA 2 cut(s) 31, 321
Tth111I GACNNNGTC 1 cut(s) 1056
Van91I CCANNNNNTGG 1 cut(s) 171
Vha464I CTTAAG 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 1 cut(s) 137
XceI RCATGY 2 cut(s) 182, 884
XhoI CTCGAG 1 cut(s) 752
XmiI GTMKAC 3 cut(s) 75, 585, 672
XspI CTAG 2 cut(s) 227, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.