AT5G02920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016476
Physical Location & Seq
Forward (+)
680492 .. 681777
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02920.1

Sequence Viewer

Length: 777 bp
ATGGAAGAGGAAGACCACGCCACCTTTGCTGTAGGAAACCCTAGCCACCGTTTTGATCGTCCTCTAATCAGACGATCAAGTGATTCAATCAGCAATCTACCCGACGAAATTCTTCACCATATCCTCTCCTTTATTCCCGAGACCAATTTAGTGATCAGAACCTCGGTCTTGTCGAAACGATGGAGACATGTATGGTCCAAGACACCTCATCTCTCCTTTGAATGGCTTATGGTTTCCCCTAAATTGATAAACAAAACCCTAGCCAGCTACACGGCTTCCAAAATCACGAGTTTCCATCTCTGTACCAGTTACAGCTACGAGGCTGGCCATGTTCATAGCTCGATCGAGTTTGCAATGTCTCACAACGTGGATAATCTTTCTCTGGCGTTCAGTAGTTTTCCACCGTGTAACAAGTTTCCTGATTTCTTCTACACCAGCTCTTCTCTAAAGCGAGTCGAGTTGAGATCTGCTAGTTTGACTCCCAGTTGCATTGTGTCTTGGACCTCACTAAGGGACTTGTCTTTGACCCGGTGTAATCTCTCGGATAAATCCTTTCTTAAGATTCTGTCTGGTTGTCCAATCCTCGAAAGCTTGAGTTTGAAGTTTTGTGAGTCACTCAAGTATCTTGATCTGAGTAAATCACTGCGCTTGACAAGATTGGAGATAGAACGCAGATCCTGTTTTCGAGAACCAATGCAGTCTATGCAGATCGTGGCGCCACATATTCATTATTTGAGATTGAGAGACTCTGAGGCACACTGCACTTTCCTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

258

Amino Acids

29.67

Weight (kDa)

8.78

Isoelectric Point (pI)

67.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 67 2.8e-08 F-box domain
F-box-like PF12937 30 - 64 9.2e-06 F-box-like
LRR_At1g61320_AtMIF1 PF23622 94 - 249 8.4e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 120 - 219 1.5e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 715
AclWI GGATC 1 cut(s) 669
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 716
AdeI CACNNNGTG 1 cut(s) 367
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 222, 510
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 3 cut(s) 87, 221, 601
AjnI CCWGG 1 cut(s) 768
AluBI AGCT 5 cut(s) 267, 315, 339, 438, 591
AluI AGCT 5 cut(s) 267, 315, 339, 438, 591
Alw26I GTCTC 4 cut(s) 134, 178, 363, 738
AlwI GGATC 1 cut(s) 669
AlwNI CAGNNNCTG 1 cut(s) 678
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 2 cut(s) 648, 718
AspS9I GGNCC 2 cut(s) 195, 501
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 195, 501
BaeI ACNNNNGTAYC 2 cut(s) 605, 638
BalI TGGCCA 1 cut(s) 327
BanI GGYRCC 1 cut(s) 715
BauI CACGAG 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 18
BccI CCATC 2 cut(s) 174, 303
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 770
BclI TGATCA 1 cut(s) 153
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 4 cut(s) 134, 178, 363, 738
BfaI CTAG 3 cut(s) 42, 260, 471
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 719
BfrI CTTAAG 1 cut(s) 557
BglII AGATCT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 529, 770
Bme18I GGWCC 2 cut(s) 195, 501
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 195, 501
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 2 cut(s) 529, 770
BmrI ACTGGG 1 cut(s) 477
BmuI ACTGGG 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 602, 613
BpuMI CCSGG 1 cut(s) 529
BsaHI GRCGYC 1 cut(s) 716
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 510
Bse1I ACTGG 2 cut(s) 306, 483
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 222, 510
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 2 cut(s) 623, 741
BseNI ACTGG 2 cut(s) 306, 483
BsgI GTGCAG 1 cut(s) 745
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 327
BshNI GGYRCC 1 cut(s) 715
BsiEI CGRYCG 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 529
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 222, 510
BsmAI GTCTC 4 cut(s) 134, 178, 363, 738
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 137
Bsp143I GATC 8 cut(s) 55, 74, 153, 342, 464, 628, 674, 708
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 624, 742
BspLI GGNNCC 1 cut(s) 717
BspPI GGATC 1 cut(s) 669
BspQI GCTCTTC 1 cut(s) 445
BspT107I GGYRCC 1 cut(s) 715
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 2 cut(s) 306, 483
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 8 cut(s) 55, 74, 153, 342, 464, 628, 674, 708
BssNI GRCGYC 1 cut(s) 716
BssSI CACGAG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 2 cut(s) 50, 405
Bst6I CTCTTC 1 cut(s) 445
BstACI GRCGYC 1 cut(s) 716
BstAFI CTTAAG 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 703
BstC8I GCNNGC 2 cut(s) 265, 325
BstDEI CTNAG 3 cut(s) 509, 632, 750
BstENI CCTNNNNNAGG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 719
BstHHI GCGC 2 cut(s) 648, 718
BstKTI GATC 8 cut(s) 58, 77, 156, 345, 467, 631, 677, 711
BstMAI GTCTC 4 cut(s) 134, 178, 363, 738
BstMBI GATC 8 cut(s) 55, 74, 153, 342, 464, 628, 674, 708
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 2 cut(s) 26, 703
BstNI CCWGG 1 cut(s) 770
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 527, 768
BstSFI CTRYAG 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 464, 674
BstYI RGATCY 2 cut(s) 464, 674
BsuRI GGCC 1 cut(s) 327
BtsI GCAGTG 2 cut(s) 641, 757
BtsIMutI CAGTG 2 cut(s) 641, 757
Cac8I GCNNGC 2 cut(s) 265, 325
CaiI CAGNNNCTG 1 cut(s) 678
CfoI GCGC 2 cut(s) 648, 718
Cfr13I GGNCC 2 cut(s) 195, 501
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 188, 329
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 3 cut(s) 509, 632, 750
DinI GGCGCC 1 cut(s) 717
DpnI GATC 8 cut(s) 57, 76, 155, 344, 466, 630, 676, 710
DpnII GATC 8 cut(s) 55, 74, 153, 342, 464, 628, 674, 708
DraIII CACNNNGTG 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 195, 501
Eco88I CYCGRG 1 cut(s) 137
EcoNI CCTNNNNNAGG 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 768
EgeI GGCGCC 1 cut(s) 717
EheI GGCGCC 1 cut(s) 717
FaeI CATG 2 cut(s) 191, 332
FaiI YATR 9 cut(s) 120, 189, 193, 230, 330, 336, 704, 723, 775
FaqI GGGAC 1 cut(s) 527
FatI CATG 2 cut(s) 187, 328
FbaI TGATCA 1 cut(s) 153
FspBI CTAG 3 cut(s) 42, 260, 471
GlaI GCGC 2 cut(s) 647, 717
HaeII RGCGCY 1 cut(s) 719
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 529
HhaI GCGC 2 cut(s) 648, 718
Hin1I GRCGYC 1 cut(s) 716
Hin1II CATG 2 cut(s) 191, 332
Hin6I GCGC 2 cut(s) 646, 716
HinP1I GCGC 2 cut(s) 646, 716
HindIII AAGCTT 1 cut(s) 589
HinfI GANTC 6 cut(s) 83, 453, 478, 562, 611, 746
HpaII CCGG 1 cut(s) 529
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 5 cut(s) 71, 158, 544, 633, 751
Hpy188III TCNNGA 5 cut(s) 137, 286, 419, 626, 686
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 2 cut(s) 50, 405
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 5 cut(s) 353, 489, 697, 706, 762
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 703
HpyF3I CTNAG 3 cut(s) 509, 632, 750
HpySE526I ACGT 1 cut(s) 366
Hsp92I GRCGYC 1 cut(s) 716
Hsp92II CATG 2 cut(s) 191, 332
HspAI GCGC 2 cut(s) 646, 716
KasI GGCGCC 1 cut(s) 715
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 8 cut(s) 55, 74, 153, 342, 464, 628, 674, 708
LguI GCTCTTC 1 cut(s) 445
MaeI CTAG 3 cut(s) 42, 260, 471
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 308, 407, 612
MalI GATC 8 cut(s) 57, 76, 155, 344, 466, 630, 676, 710
MboI GATC 8 cut(s) 55, 74, 153, 342, 464, 628, 674, 708
MboII GAAGA 5 cut(s) 17, 23, 104, 418, 432
MflI RGATCY 2 cut(s) 464, 674
MlsI TGGCCA 1 cut(s) 327
MluCI AATT 3 cut(s) 108, 145, 242
MluNI TGGCCA 1 cut(s) 327
Mly113I GGCGCC 1 cut(s) 716
MlyI GAGTC 4 cut(s) 462, 472, 620, 740
MnlI CCTC 8 cut(s) 72, 134, 172, 216, 313, 514, 593, 745
Mox20I TGGCCA 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 111
MscI TGGCCA 1 cut(s) 327
MseI TTAA 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 327
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 1 cut(s) 529
MspR9I CCNGG 2 cut(s) 529, 770
MvaI CCWGG 1 cut(s) 770
MwoI GCNNNNNNNGC 2 cut(s) 26, 703
NarI GGCGCC 1 cut(s) 716
NciI CCSGG 1 cut(s) 529
NdeII GATC 8 cut(s) 55, 74, 153, 342, 464, 628, 674, 708
NlaIII CATG 2 cut(s) 191, 332
NlaIV GGNNCC 1 cut(s) 717
NmuCI GTSAC 1 cut(s) 612
NspI RCATGY 1 cut(s) 191
PciI ACATGT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 83, 562
Ple19I CGATCG 1 cut(s) 345
PleI GAGTC 4 cut(s) 461, 472, 619, 740
PluTI GGCGCC 1 cut(s) 719
PpsI GAGTC 4 cut(s) 461, 472, 619, 740
PscI ACATGT 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 768
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 2 cut(s) 195, 501
PstNI CAGNNNCTG 1 cut(s) 678
PsuI RGATCY 2 cut(s) 464, 674
PvuI CGATCG 1 cut(s) 345
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 445
SaqAI TTAA 1 cut(s) 558
Sau3AI GATC 8 cut(s) 55, 74, 153, 342, 464, 628, 674, 708
Sau96I GGNCC 2 cut(s) 195, 501
SchI GAGTC 4 cut(s) 462, 472, 620, 740
ScrFI CCNGG 2 cut(s) 529, 770
SfcI CTRYAG 1 cut(s) 30
SfoI GGCGCC 1 cut(s) 717
SinI GGWCC 2 cut(s) 195, 501
SmlI CTYRAG 3 cut(s) 557, 592, 617
SmoI CTYRAG 3 cut(s) 557, 592, 617
Sse9I AATT 3 cut(s) 108, 145, 242
SspDI GGCGCC 1 cut(s) 715
SspMI CTAG 3 cut(s) 42, 260, 471
StyD4I CCNGG 2 cut(s) 527, 768
TaaI ACNGT 2 cut(s) 50, 405
TaiI ACGT 1 cut(s) 369
TaqI TCGA 6 cut(s) 173, 341, 345, 456, 585, 685
TaqII GACCGA 1 cut(s) 154
TasI AATT 3 cut(s) 108, 145, 242
TfiI GAWTC 2 cut(s) 83, 562
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 2 cut(s) 648, 764
TseFI GTSAC 1 cut(s) 612
Tsp45I GTSAC 1 cut(s) 612
TspDTI ATGAA 2 cut(s) 323, 716
TspRI CASTG 2 cut(s) 648, 764
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 2 cut(s) 195, 501
XagI CCTNNNNNAGG 1 cut(s) 508
XapI RAATTY 1 cut(s) 108
XceI RCATGY 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 3 cut(s) 42, 260, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.