RLG00000002742

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016476
Physical Location & Seq
Forward (+)
38959454 .. 38961962
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002742

Sequence Viewer

Length: 399 bp
ATGCCGCCTCTGTTTTATGAGCTTCCTGCTGCCTCTAAACTCACTTCTCTGCCTTCGTTTCATTTTCTGGAAATCGAAGGTGACGACGGCAGTGCAAGAGAAAGCAGCCTGGCCTACCGCCTCGTCCAAACGGCGTCACTGACGTCTTCACCACCAGAGAAGAGCAAGAAGGCAGGGAAGACATCTCCCATCGATTTGCGGTGGAAAGGCGCTGCTCAGAGGCAAAGCTTTAACGCACGGGTGGTTGGATTGGTGTTGAAGTCGGGTTCTGGATTGAAGTTAGCCTTGAACAGTGATCTTCTGAGTGCAGTCGCTATAATGAAGTCGATTGGCCGTGGTGCTCGGATCCATGCAGCGGATTTGGGAGTGAAGCGTTGTCGGGGCTTGGAGGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.05

Weight (kDa)

9.86

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 146
AciI CCGC 4 cut(s) 5, 118, 199, 356
AclWI GGATC 2 cut(s) 340, 353
AcoI YGGCCR 1 cut(s) 331
AcyI GRCGYC 2 cut(s) 134, 143
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 3 cut(s) 259, 277, 289
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 22, 228
AluI AGCT 2 cut(s) 22, 228
Alw21I GWGCWC 1 cut(s) 343
AlwI GGATC 2 cut(s) 340, 353
AoxI GGCC 2 cut(s) 111, 331
ApeKI GCWGC 4 cut(s) 29, 105, 212, 353
AspLEI GCGC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 92, 141
BamHI GGATCC 1 cut(s) 345
BbsI GAAGAC 2 cut(s) 138, 185
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 4 cut(s) 16, 117, 199, 365
BccI CCATC 1 cut(s) 197
BceAI ACGGC 3 cut(s) 103, 147, 318
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 1 cut(s) 110
BfaI CTAG 1 cut(s) 397
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 5 cut(s) 5, 30, 106, 213, 354
BlsI GCNGC 5 cut(s) 6, 31, 107, 214, 355
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 110
BpiI GAAGAC 2 cut(s) 138, 185
Bsa29I ATCGAT 1 cut(s) 192
BsaHI GRCGYC 2 cut(s) 134, 143
BsaJI CCNNGG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 110
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 230, 293
BseXI GCAGC 4 cut(s) 16, 117, 199, 365
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 2 cut(s) 113, 333
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 355
BsnI GGCC 2 cut(s) 113, 333
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 295, 345
BspACI CCGC 4 cut(s) 5, 118, 199, 356
BspANI GGCC 2 cut(s) 113, 333
BspCNI CTCAG 2 cut(s) 229, 294
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 2 cut(s) 340, 353
BspQI GCTCTTC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 2 cut(s) 295, 345
BssNI GRCGYC 2 cut(s) 134, 143
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 2 cut(s) 134, 143
BstDEI CTNAG 2 cut(s) 216, 302
BstDSI CCRYGG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 2 cut(s) 298, 348
BstMBI GATC 2 cut(s) 295, 345
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 4 cut(s) 16, 117, 199, 365
BstV2I GAAGAC 2 cut(s) 138, 185
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 2 cut(s) 113, 333
BsuTUI ATCGAT 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 3 cut(s) 97, 137, 298
CfoI GCGC 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 1 cut(s) 123
CviAII CATG 1 cut(s) 350
CviJI RGCY 7 cut(s) 22, 108, 113, 228, 284, 333, 384
CviKI_1 RGCY 7 cut(s) 22, 108, 113, 228, 284, 333, 384
DdeI CTNAG 2 cut(s) 216, 302
DpnI GATC 2 cut(s) 297, 347
DpnII GATC 2 cut(s) 295, 345
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 353
FaiI YATR 3 cut(s) 18, 317, 351
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FatI CATG 1 cut(s) 349
Fnu4HI GCNGC 5 cut(s) 5, 30, 106, 213, 354
Fsp4HI GCNGC 5 cut(s) 5, 30, 106, 213, 354
FspBI CTAG 1 cut(s) 397
GlaI GCGC 1 cut(s) 211
GluI GCNGC 5 cut(s) 5, 30, 106, 213, 354
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 2 cut(s) 113, 333
HgaI GACGC 1 cut(s) 123
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 2 cut(s) 134, 143
Hin1II CATG 1 cut(s) 353
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 226
HphI GGTGA 2 cut(s) 92, 141
Hpy188I TCNGA 3 cut(s) 219, 303, 345
Hpy188III TCNNGA 2 cut(s) 68, 270
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 63, 71, 163
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 95, 308, 353
HpyF3I CTNAG 2 cut(s) 216, 302
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 2 cut(s) 134, 143
Hsp92II CATG 1 cut(s) 353
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 2 cut(s) 295, 345
LguI GCTCTTC 1 cut(s) 155
LpnPI CCDG 7 cut(s) 39, 53, 95, 122, 159, 168, 255
Lsp1109I GCAGC 4 cut(s) 16, 117, 199, 365
MaeI CTAG 1 cut(s) 397
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 80, 135
MalI GATC 2 cut(s) 297, 347
MboI GATC 2 cut(s) 295, 345
MboII GAAGA 4 cut(s) 138, 172, 190, 290
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 5 cut(s) 18, 43, 131, 213, 382
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
NdeII GATC 2 cut(s) 295, 345
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 2 cut(s) 80, 135
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PkrI GCNGC 5 cut(s) 6, 31, 107, 214, 355
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 347
PsuI RGATCY 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 5 cut(s) 5, 30, 106, 213, 354
Sau3AI GATC 2 cut(s) 295, 345
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 343
SetI ASST 4 cut(s) 24, 82, 146, 230
SsiI CCGC 4 cut(s) 5, 118, 199, 356
SspMI CTAG 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 75, 192, 326
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 3 cut(s) 97, 144, 298
TseFI GTSAC 2 cut(s) 80, 135
TseI GCWGC 4 cut(s) 29, 105, 212, 353
Tsp45I GTSAC 2 cut(s) 80, 135
TspDTI ATGAA 2 cut(s) 50, 335
TspRI CASTG 3 cut(s) 97, 144, 298
XspI CTAG 1 cut(s) 397
ZraI GACGTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.