AT5G02910

FBD-associated F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016476
Physical Location & Seq
Forward (+)
677031 .. 679263
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02910.1

Sequence Viewer

Length: 1377 bp
ATGATAACTGGCGATTCAATCGACGGTATGGATTTCATCAGCTCTCTACCTGACGAGATTCTCCACCATATCCTCTCCTCTGTTCCGACCAAATCCGCGATCAGAACCTCTCTCTTGTCCAAACGGTGGAGATATGTTTGGTCCGAGACACCTTCTCTCTCCATTGATTGCCGTAGAGCCGATCCTAATTCGATCGATAAAACTCTATCTTTCTTCTCCGCTCCCAAAATCACAAGCTTTCATCTTCATACAACCTTACTCAACAGGATTGATTCTGTTAATGGCTGCATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTTTCACTGGAGTCTCGTGATTATCGTGTCAGAAATTACAAGTTTCCTGATTTCTTCTACACCAATTCATCTGTGAAGCAACTCTTTGTCGACTCTGGATCTGTTCATTTGATTCCCAGATGCACTGTCTCTTGGACTTCTCTAAAGAACTTGTCTTTGAGCAATTGCACACTTTCTGATGAATCATTTCTTAAGATTCTTTCTGGTTCTCCACTTCTGGAAAGCTTGGAGTTGTTGTATTGTGCTGAATATATGTGTCTTGATCTGAGTCAATCACAGCATCTAAGAAGATTGGAGATTGACCGTAGCGATTGGTTTATGGGGCCAACGAAGATTGTGGCACCGCATCTCCATTGTTTGAGATTGAGACACTCGAGATTACCATGTAGTTTAGTTGATGTCTCTTCTTTAACCGAAGCTGACTTGAACATTTACTTTGGCGATCTTAAAACTGTTACCGCTGGTTTTCTTCAACACAATGTGGTCAAGATGCTACAAATGTTGCAGAATGTAGAGAAGCTTACTATTGGGGGTACCTTTCTTCAGATGTTATCTCTTGCCGCGCTCTGTGGTGTACCTTTTCCGACGCTCAAGGTCAAAACTTTGACTCTCGAAACGATGATTATTCGGTCTGTTATTCCTGGTATAACAAAGCTACTACGGTACACACCTGGATTACGGAAGCTAACAATTCACACTGTGAAATGCAGCAGCATATCGGAATTGCATCTCAATGACTACTTGCGTAAACATAGCTTGAATCAGCGTCAATGCTGGAGATCAAAAGACTCGGTCTTCCCGGGCTCTCTTGAGACCATTTCGATGTTGGCGAGTAAACACGCAGAGTCCAATCTCGTGGCTTTGTTCATGGAACGTCTACTGAAAAGTACAAAAAGTCTAGAAACCATGGTTGTACTCTTGGTAGATTACCTTGATGCATTGGGTTTTGAAGAACTTCTTGCAATGGCTACAACACTTTCTCACAACAATGATGTCTCTGTTTTGATCAAACGAAGCTATATAAAGTATGTATCCAACACTTTCCCTCAACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

458

Amino Acids

51.85

Weight (kDa)

8.76

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 48 3.6e-10 F-box domain
F-box-like PF12937 13 - 48 9.2e-07 F-box-like
LRR_At1g61320_AtMIF1 PF23622 89 - 285 6.2e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 101 - 211 3.9e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 854
AccB1I GGYRCC 2 cut(s) 661, 854
AccB7I CCANNNNNTGG 1 cut(s) 126
AccBSI CCGCTC 1 cut(s) 221
AccI GTMKAC 2 cut(s) 411, 1198
AccII CGCG 2 cut(s) 98, 884
AciI CCGC 5 cut(s) 96, 219, 665, 780, 882
AclWI GGATC 2 cut(s) 176, 427
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 848
AdeI CACNNNGTG 2 cut(s) 802, 1021
AfaI GTAC 5 cut(s) 856, 897, 986, 1210, 1236
AfiI CCNNNNNNNGG 1 cut(s) 126
AflII CTTAAG 1 cut(s) 512
AgsI TTSAA 5 cut(s) 18, 748, 794, 1081, 1271
AjnI CCWGG 2 cut(s) 961, 991
Alw26I GTCTC 7 cut(s) 140, 339, 454, 682, 727, 1127, 1321
AlwI GGATC 2 cut(s) 176, 427
Ama87I CYCGRG 2 cut(s) 694, 1120
AoxI GGCC 1 cut(s) 644
ApeKI GCWGC 3 cut(s) 285, 1029, 1032
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 2 cut(s) 507, 1275
Asp718I GGTACC 1 cut(s) 854
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 2 cut(s) 141, 644
AsuC2I CCSGG 2 cut(s) 1121, 1122
AvaI CYCGRG 2 cut(s) 694, 1120
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 2 cut(s) 661, 854
BanII GRGCYC 1 cut(s) 1127
BauI CACGAG 2 cut(s) 336, 1175
BbsI GAAGAC 1 cut(s) 1108
BbvI GCAGC 3 cut(s) 272, 1041, 1044
BceAI ACGGC 1 cut(s) 156
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 2 cut(s) 963, 993
BciVI GTATCC 1 cut(s) 1363
BclI TGATCA 1 cut(s) 1326
BcnI CCSGG 2 cut(s) 1121, 1122
BcoDI GTCTC 7 cut(s) 140, 339, 454, 682, 727, 1127, 1321
BfaI CTAG 1 cut(s) 1220
BfrI CTTAAG 1 cut(s) 512
BfuI GTATCC 1 cut(s) 1363
BisI GCNGC 4 cut(s) 286, 882, 1030, 1033
BlsI GCNGC 4 cut(s) 287, 883, 1031, 1034
Bme1390I CCNGG 4 cut(s) 963, 993, 1121, 1122
Bme18I GGWCC 1 cut(s) 141
BmeT110I CYCGRG 2 cut(s) 694, 1120
BmgT120I GGNCC 2 cut(s) 141, 644
BmiI GGNNCC 3 cut(s) 645, 663, 856
BmrFI CCNGG 4 cut(s) 963, 993, 1121, 1122
BmsI GCATC 7 cut(s) 297, 431, 610, 676, 801, 1057, 1246
BpiI GAAGAC 1 cut(s) 1108
BpmI CTGGAG 2 cut(s) 350, 1117
BpuEI CTTGAG 2 cut(s) 896, 1151
BpuMI CCSGG 2 cut(s) 1121, 1122
Bsa29I ATCGAT 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 1127
BsaJI CCNNGG 2 cut(s) 1120, 1227
BsaXI ACNNNNNCTCC 4 cut(s) 542, 572, 654, 684
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse1I ACTGG 2 cut(s) 13, 333
Bse3DI GCAATG 1 cut(s) 1290
BseBI CCWGG 2 cut(s) 963, 993
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 1120, 1227
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 1290
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 2 cut(s) 13, 333
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 3 cut(s) 272, 1041, 1044
Bsh1236I CGCG 2 cut(s) 98, 884
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 646
BshNI GGYRCC 2 cut(s) 661, 854
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 195
BsiHKCI CYCGRG 2 cut(s) 694, 1120
BsiSI CCGG 1 cut(s) 1121
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 7 cut(s) 140, 339, 454, 682, 727, 1127, 1321
BsnI GGCC 1 cut(s) 646
Bso31I GGTCTC 1 cut(s) 1127
BsoBI CYCGRG 2 cut(s) 694, 1120
Bsp1286I GDGCHC 1 cut(s) 1127
Bsp143I GATC 8 cut(s) 99, 181, 192, 419, 583, 763, 1100, 1326
Bsp19I CCATGG 1 cut(s) 1227
BspACI CCGC 5 cut(s) 96, 219, 665, 780, 882
BspANI GGCC 1 cut(s) 646
BspCNI CTCAG 1 cut(s) 579
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 2 cut(s) 98, 884
BspLI GGNNCC 3 cut(s) 645, 663, 856
BspPI GGATC 2 cut(s) 176, 427
BspT107I GGYRCC 2 cut(s) 661, 854
BspTI CTTAAG 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 1127
BsrBI CCGCTC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 1290
BsrI ACTGG 2 cut(s) 13, 333
BssECI CCNNGG 2 cut(s) 1120, 1227
BssMI GATC 8 cut(s) 99, 181, 192, 419, 583, 763, 1100, 1326
BssSI CACGAG 2 cut(s) 336, 1175
BssT1I CCWWGG 1 cut(s) 1227
Bst2BI CACGAG 2 cut(s) 336, 1175
Bst2UI CCWGG 2 cut(s) 963, 993
Bst4CI ACNGT 7 cut(s) 26, 126, 448, 626, 775, 984, 1021
Bst6I CTCTTC 1 cut(s) 730
BstAFI CTTAAG 1 cut(s) 512
BstDEI CTNAG 2 cut(s) 587, 605
BstDSI CCRYGG 1 cut(s) 1227
BstFNI CGCG 2 cut(s) 98, 884
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 8 cut(s) 102, 184, 195, 422, 586, 766, 1103, 1329
BstMAI GTCTC 7 cut(s) 140, 339, 454, 682, 727, 1127, 1321
BstMBI GATC 8 cut(s) 99, 181, 192, 419, 583, 763, 1100, 1326
BstMCI CGRYCG 1 cut(s) 195
BstNI CCWGG 2 cut(s) 963, 993
BstSCI CCNGG 4 cut(s) 961, 991, 1119, 1120
BstUI CGCG 2 cut(s) 98, 884
BstV1I GCAGC 3 cut(s) 272, 1041, 1044
BstV2I GAAGAC 1 cut(s) 1108
BstX2I RGATCY 1 cut(s) 419
BstXI CCANNNNNNTGG 1 cut(s) 1177
BstYI RGATCY 1 cut(s) 419
Bsu15I ATCGAT 1 cut(s) 195
BsuI GTATCC 1 cut(s) 1363
BsuRI GGCC 1 cut(s) 646
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 1227
BtsIMutI CAGTG 3 cut(s) 326, 444, 1017
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 2 cut(s) 141, 644
Cfr9I CCCGGG 1 cut(s) 1120
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 2 cut(s) 916, 1076
Csp6I GTAC 5 cut(s) 855, 896, 985, 1209, 1235
CviAII CATG 3 cut(s) 705, 1189, 1228
CviQI GTAC 5 cut(s) 855, 896, 985, 1209, 1235
DdeI CTNAG 2 cut(s) 587, 605
DpnI GATC 8 cut(s) 101, 183, 194, 421, 585, 765, 1102, 1328
DpnII GATC 8 cut(s) 99, 181, 192, 419, 583, 763, 1100, 1326
DraIII CACNNNGTG 2 cut(s) 802, 1021
Eam1104I CTCTTC 1 cut(s) 730
EarI CTCTTC 1 cut(s) 730
Eco130I CCWWGG 1 cut(s) 1227
Eco24I GRGCYC 1 cut(s) 1127
Eco31I GGTCTC 1 cut(s) 1127
Eco47I GGWCC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 848
Eco88I CYCGRG 2 cut(s) 694, 1120
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 961, 991
EcoT14I CCWWGG 1 cut(s) 1227
EcoT22I ATGCAT 1 cut(s) 1261
EcoT38I GRGCYC 1 cut(s) 1127
ErhI CCWWGG 1 cut(s) 1227
FaeI CATG 3 cut(s) 708, 1192, 1231
FalI AAGNNNNNCTT 4 cut(s) 389, 421, 1263, 1295
FatI CATG 3 cut(s) 704, 1188, 1227
FbaI TGATCA 1 cut(s) 1326
FblI GTMKAC 2 cut(s) 411, 1198
Fnu4HI GCNGC 4 cut(s) 286, 882, 1030, 1033
FriOI GRGCYC 1 cut(s) 1127
Fsp4HI GCNGC 4 cut(s) 286, 882, 1030, 1033
FspBI CTAG 1 cut(s) 1220
GlaI GCGC 1 cut(s) 885
GluI GCNGC 4 cut(s) 286, 882, 1030, 1033
GsuI CTGGAG 2 cut(s) 350, 1117
HaeIII GGCC 1 cut(s) 646
HapII CCGG 1 cut(s) 1121
HgaI GACGC 2 cut(s) 916, 1076
HhaI GCGC 1 cut(s) 886
Hin1II CATG 3 cut(s) 708, 1192, 1231
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 4 cut(s) 235, 320, 544, 839
HpaII CCGG 1 cut(s) 1121
Hpy166II GTNNAC 6 cut(s) 412, 896, 987, 1070, 1157, 1199
Hpy188I TCNGA 9 cut(s) 87, 104, 145, 353, 499, 588, 867, 906, 1042
Hpy8I GTNNAC 6 cut(s) 412, 896, 987, 1070, 1157, 1199
Hpy99I CGWCG 2 cut(s) 26, 910
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 7 cut(s) 26, 126, 448, 626, 775, 984, 1021
HpyCH4IV ACGT 1 cut(s) 1195
HpyCH4V TGCA 8 cut(s) 288, 444, 489, 826, 1029, 1048, 1259, 1283
HpyF3I CTNAG 2 cut(s) 587, 605
HpySE526I ACGT 1 cut(s) 1195
Hsp92II CATG 3 cut(s) 708, 1192, 1231
HspAI GCGC 1 cut(s) 884
KpnI GGTACC 1 cut(s) 858
Ksp22I TGATCA 1 cut(s) 1326
Kzo9I GATC 8 cut(s) 99, 181, 192, 419, 583, 763, 1100, 1326
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 3 cut(s) 272, 1041, 1044
LweI GCATC 7 cut(s) 297, 431, 610, 676, 801, 1057, 1246
MaeI CTAG 1 cut(s) 1220
MaeII ACGT 1 cut(s) 1195
MaeIII GTNAC 1 cut(s) 775
MalI GATC 8 cut(s) 101, 183, 194, 421, 585, 765, 1102, 1328
MbiI CCGCTC 1 cut(s) 221
MboI GATC 8 cut(s) 99, 181, 192, 419, 583, 763, 1100, 1326
MfeI CAATTG 1 cut(s) 484
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 1 cut(s) 1127
MluCI AATT 7 cut(s) 187, 293, 355, 385, 484, 1011, 1043
MlyI GAGTC 6 cut(s) 341, 407, 598, 922, 1103, 1175
MmeI TCCRAC 2 cut(s) 110, 929
MnlI CCTC 4 cut(s) 83, 88, 118, 1377
Mph1103I ATGCAT 1 cut(s) 1261
MroXI GAANNNNTTC 2 cut(s) 507, 1275
MseI TTAA 4 cut(s) 279, 513, 731, 768
MslI CAYNNNNRTG 3 cut(s) 1053, 1142, 1308
MspA1I CMGCKG 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 4 cut(s) 963, 993, 1121, 1122
MunI CAATTG 1 cut(s) 484
MvaI CCWGG 2 cut(s) 963, 993
MvnI CGCG 2 cut(s) 98, 884
NciI CCSGG 2 cut(s) 1121, 1122
NcoI CCATGG 1 cut(s) 1227
NdeII GATC 8 cut(s) 99, 181, 192, 419, 583, 763, 1100, 1326
NlaIII CATG 3 cut(s) 708, 1192, 1231
NlaIV GGNNCC 3 cut(s) 645, 663, 856
NsiI ATGCAT 1 cut(s) 1261
PaeR7I CTCGAG 1 cut(s) 694
PcsI WCGNNNNNNNCGW 2 cut(s) 343, 1148
PdmI GAANNNNTTC 2 cut(s) 507, 1275
PfeI GAWTC 7 cut(s) 14, 58, 272, 433, 503, 517, 1081
PflFI GACNNNGTC 1 cut(s) 1112
PflMI CCANNNNNTGG 1 cut(s) 126
PkrI GCNGC 4 cut(s) 287, 883, 1031, 1034
Ple19I CGATCG 1 cut(s) 195
PleI GAGTC 6 cut(s) 340, 407, 597, 922, 1103, 1174
PpsI GAGTC 6 cut(s) 340, 407, 597, 922, 1103, 1174
Psp6I CCWGG 2 cut(s) 961, 991
PspGI CCWGG 2 cut(s) 961, 991
PspN4I GGNNCC 3 cut(s) 645, 663, 856
PspPI GGNCC 2 cut(s) 141, 644
PsuI RGATCY 1 cut(s) 419
PsyI GACNNNGTC 1 cut(s) 1112
PvuI CGATCG 1 cut(s) 195
RsaI GTAC 5 cut(s) 856, 897, 986, 1210, 1236
RsaNI GTAC 5 cut(s) 855, 896, 985, 1209, 1235
RseI CAYNNNNRTG 3 cut(s) 1053, 1142, 1308
SalI GTCGAC 1 cut(s) 410
SaqAI TTAA 4 cut(s) 279, 513, 731, 768
SatI GCNGC 4 cut(s) 286, 882, 1030, 1033
Sau3AI GATC 8 cut(s) 99, 181, 192, 419, 583, 763, 1100, 1326
Sau96I GGNCC 2 cut(s) 141, 644
SchI GAGTC 6 cut(s) 341, 407, 598, 922, 1103, 1175
ScrFI CCNGG 4 cut(s) 963, 993, 1121, 1122
SduI GDGCHC 1 cut(s) 1127
SfaNI GCATC 7 cut(s) 297, 431, 610, 676, 801, 1057, 1246
Sfr274I CTCGAG 1 cut(s) 694
SinI GGWCC 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 694
SmaI CCCGGG 1 cut(s) 1122
SmiMI CAYNNNNRTG 3 cut(s) 1053, 1142, 1308
SmlI CTYRAG 4 cut(s) 512, 694, 911, 1130
SmoI CTYRAG 4 cut(s) 512, 694, 911, 1130
Sse9I AATT 7 cut(s) 187, 293, 355, 385, 484, 1011, 1043
SsiI CCGC 5 cut(s) 96, 219, 665, 780, 882
SspMI CTAG 1 cut(s) 1220
StyD4I CCNGG 4 cut(s) 961, 991, 1119, 1120
StyI CCWWGG 1 cut(s) 1227
TaaI ACNGT 7 cut(s) 26, 126, 448, 626, 775, 984, 1021
TaiI ACGT 1 cut(s) 1198
TaqI TCGA 8 cut(s) 21, 191, 195, 291, 411, 695, 933, 1142
TaqII GACCGA 2 cut(s) 939, 1102
TasI AATT 7 cut(s) 187, 293, 355, 385, 484, 1011, 1043
TatI WGTACW 2 cut(s) 1208, 1234
TauI GCSGC 1 cut(s) 884
TfiI GAWTC 7 cut(s) 14, 58, 272, 433, 503, 517, 1081
Tru1I TTAA 4 cut(s) 279, 513, 731, 768
Tru9I TTAA 4 cut(s) 279, 513, 731, 768
TscAI CASTG 3 cut(s) 333, 451, 1024
TseI GCWGC 3 cut(s) 285, 1029, 1032
TspDTI ATGAA 7 cut(s) 25, 230, 236, 378, 416, 516, 1177
TspGWI ACGGA 1 cut(s) 1015
TspMI CCCGGG 1 cut(s) 1120
TspRI CASTG 3 cut(s) 333, 451, 1024
Tth111I GACNNNGTC 1 cut(s) 1112
Van91I CCANNNNNTGG 1 cut(s) 126
Vha464I CTTAAG 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 1144
XhoI CTCGAG 1 cut(s) 694
XmaI CCCGGG 1 cut(s) 1120
XmiI GTMKAC 2 cut(s) 411, 1198
XmnI GAANNNNTTC 2 cut(s) 507, 1275
XspI CTAG 1 cut(s) 1220
Zsp2I ATGCAT 1 cut(s) 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.