AT5G02930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016476
Physical Location & Seq
Forward (+)
682411 .. 684480
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02930.1

Sequence Viewer

Length: 1410 bp
ATGAGATTCAAACAACCTAGCCGTCGAGATCGTCCCGTCATGTTTAAACGATCAAAAAATGTTTCAGTCGATGTTGGTGTAGACTCAATCAGCGATCTACCCGACGCTGTTCTCCAACATATCTTCTCCTATATTCCGACAGAGTTGGCGATCAGAACCTCTGTCTTGTCCAAACGATGGAGACATGTATGGTCCGAGACACCTCATCTCTCCTTTGAATGGCTCAAGGTTTCCCCTAAATTGATAAACAAAACCCTAGCCAGCTACACGGCTTCCAAGATCAAGAGTTTTCATCTCTGTACCCGTTACAGCTACGAGGCAGACACTCACCATGTTAACAGCTCGATCGAGTTTGCAATGTCTCACAACGTGGATGATCTTTCTCTGGCGTTCCGTAGATGTTCACCGTTTTACAATTTTGATGATTGCTTCTACACCAACTCCTCTCTAAAGCGAGTCGAGTTGAGATATGTTGATTTGATGCCCAGGTGCATGGTGTCTTGGACATCACTAAAGAACCTGTCTTTGACCGATTGTACAATGTCTGATGAATCCTTTCTTGAGATTCTGTCTGGTTGTCCAATCCTGGAAAGCTTGAGTTTGAAGTTTTGTATGTCACTCAAGTATCTTAATCTGAGTAAATCGCTGCGCTTGACAAGATTGGAGATAGAACGCATATCCTATATTCGAGCACCAATGCTGTCTATGCAGATCGTGGCGCCATATATCCATTATTTGAGATTGAGAGACTCTGAGGCACACTGCACTTTCGTTGATGTCTCTTCTTTAACAGAAGCTAATGTCGACGTTAGCACTTTCCATCCTAGAACCTGTTATCATGATTTTGACCCCTTAGACCCTCATGATCTTCTAGTCATGGTGCAAACAATGCTAAAAACGTTTCAGAAAGTAGAGAAGCTTACTTTGGGGGTTAATTTACTTCAGATGTTATCACTTTCCAAGATCCCTAGTCTTCCATTGCCGATGCTAAAGGTCAAAACTTTGACTCTTGAAACAATGATTATCCGATCTGTGGTTCCTGGTATTGCAAGACTGCTACAAAACTTACCTGGATTAAAGAAGATAACAGTTTACACAACTAATCCGTGCAACACCGAAGTGGAGCCATGTGTTAACAGCTACTTGGACGCGCAAGACTTGAATCCAGATCAATGGTGGAGGTTAGATGATGTGGTCTTTCCGATATCTTCTGAGTATGAAGTTTTAAAGCCAGAAATTATGGCATCGTTCATGGAACTGTTGCTGGCAAACACAAGAACGCTAGAGACATTGGTTGTAGAGTTGGGAAGTTGCGTTGCTAGATCAAGATTTAAAGAGCTGTTTCAGATCGCACTCACGCTTTCTCACGACAAAAAAGTCTCAATTATGCTCAAGCGAAGCAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

469

Amino Acids

53.95

Weight (kDa)

8.49

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 65 2.1e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 92 - 263 3.6e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 120 - 234 2.4e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1376
AccB1I GGYRCC 1 cut(s) 718
AccB7I CCANNNNNTGG 1 cut(s) 177
AccI GTMKAC 2 cut(s) 81, 804
AccII CGCG 1 cut(s) 1151
AclI AACGTT 1 cut(s) 899
AclWI GGATC 1 cut(s) 958
AcuI CTGAAG 1 cut(s) 926
AcyI GRCGYC 1 cut(s) 719
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 2 cut(s) 301, 538
AfiI CCNNNNNNNGG 3 cut(s) 177, 219, 1033
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 5 cut(s) 10, 218, 604, 1013, 1162
AjnI CCWGG 4 cut(s) 485, 585, 1039, 1069
AjuI GAANNNNNNNTTGG 2 cut(s) 908, 940
AleI CACNNNNGTG 1 cut(s) 1118
AluBI AGCT 8 cut(s) 264, 312, 342, 594, 797, 919, 1140, 1339
AluI AGCT 8 cut(s) 264, 312, 342, 594, 797, 919, 1140, 1339
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 7 cut(s) 175, 191, 366, 741, 784, 1280, 1384
AlwI GGATC 1 cut(s) 958
ApeKI GCWGC 1 cut(s) 646
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 3 cut(s) 651, 721, 1153
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 320, 396
AvaII GGWCC 1 cut(s) 192
BaeI ACNNNNGTAYC 2 cut(s) 608, 641
BanI GGYRCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 965
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 1 cut(s) 633
BccI CCATC 2 cut(s) 171, 828
BceAI ACGGC 2 cut(s) 6, 285
BciT130I CCWGG 4 cut(s) 487, 587, 1041, 1071
BcoDI GTCTC 7 cut(s) 175, 191, 366, 741, 784, 1280, 1384
BfaI CTAG 7 cut(s) 18, 257, 825, 872, 969, 1283, 1320
BfoI RGCGCY 1 cut(s) 722
BisI GCNGC 1 cut(s) 647
BlsI GCNGC 1 cut(s) 648
Bme1390I CCNGG 4 cut(s) 487, 587, 1041, 1071
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 3 cut(s) 720, 1038, 1125
BmrFI CCNGG 4 cut(s) 487, 587, 1041, 1071
BmsI GCATC 3 cut(s) 471, 975, 1253
BpiI GAAGAC 1 cut(s) 965
BpuEI CTTGAG 5 cut(s) 209, 581, 605, 616, 1376
BsaHI GRCGYC 1 cut(s) 719
BsaJI CCNNGG 1 cut(s) 485
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 219, 1033
Bse3DI GCAATG 3 cut(s) 363, 977, 1408
BseBI CCWGG 4 cut(s) 487, 587, 1041, 1071
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 2 cut(s) 379, 820
BseLI CCNNNNNNNGG 3 cut(s) 177, 219, 1033
BseMI GCAATG 3 cut(s) 363, 977, 1408
BseMII CTCAG 3 cut(s) 626, 744, 1203
BseRI GAGGAG 1 cut(s) 433
BseXI GCAGC 1 cut(s) 633
BsgI GTGCAG 1 cut(s) 748
Bsh1236I CGCG 1 cut(s) 1151
Bsh1285I CGRYCG 1 cut(s) 348
BshNI GGYRCC 1 cut(s) 718
BsiEI CGRYCG 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 694
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 177, 219, 1033
BsmAI GTCTC 7 cut(s) 175, 191, 366, 741, 784, 1280, 1384
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 694
Bsp1407I TGTACA 1 cut(s) 536
BspCNI CTCAG 3 cut(s) 627, 745, 1204
BspFNI CGCG 1 cut(s) 1151
BspHI TCATGA 2 cut(s) 838, 862
BspLI GGNNCC 3 cut(s) 720, 1038, 1125
BspPI GGATC 1 cut(s) 958
BspT107I GGYRCC 1 cut(s) 718
BsrDI GCAATG 3 cut(s) 363, 977, 1408
BsrGI TGTACA 1 cut(s) 536
BssECI CCNNGG 1 cut(s) 485
BssNI GRCGYC 1 cut(s) 719
Bst2UI CCWGG 4 cut(s) 487, 587, 1041, 1071
Bst4CI ACNGT 3 cut(s) 408, 1090, 1260
Bst6I CTCTTC 1 cut(s) 787
BstACI GRCGYC 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 889
BstAUI TGTACA 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 262, 1266
BstDEI CTNAG 4 cut(s) 635, 753, 853, 1212
BstF5I GGATG 2 cut(s) 379, 820
BstFNI CGCG 1 cut(s) 1151
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 3 cut(s) 651, 721, 1153
BstMAI GTCTC 7 cut(s) 175, 191, 366, 741, 784, 1280, 1384
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 2 cut(s) 706, 889
BstNI CCWGG 4 cut(s) 487, 587, 1041, 1071
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 4 cut(s) 485, 585, 1039, 1069
BstUI CGCG 1 cut(s) 1151
BstV1I GCAGC 1 cut(s) 633
BstV2I GAAGAC 1 cut(s) 965
BstX2I RGATCY 1 cut(s) 963
BstXI CCANNNNNNTGG 2 cut(s) 493, 1173
BstYI RGATCY 1 cut(s) 963
BtsCI GGATG 2 cut(s) 379, 820
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 262, 1266
CciI TCATGA 2 cut(s) 838, 862
CfoI GCGC 3 cut(s) 651, 721, 1153
Cfr13I GGNCC 1 cut(s) 192
CseI GACGC 2 cut(s) 113, 1157
Csp6I GTAC 2 cut(s) 300, 537
CviAII CATG 9 cut(s) 40, 185, 332, 493, 839, 863, 877, 1128, 1252
CviQI GTAC 2 cut(s) 300, 537
DdeI CTNAG 4 cut(s) 635, 753, 853, 1212
DinI GGCGCC 1 cut(s) 720
DraI TTTAAA 3 cut(s) 46, 1227, 1333
DraIII CACNNNGTG 1 cut(s) 370
DrdI GACNNNNNNGTC 1 cut(s) 1376
DseDI GACNNNNNNGTC 1 cut(s) 1376
Eam1104I CTCTTC 1 cut(s) 787
EarI CTCTTC 1 cut(s) 787
Eco32I GATATC 1 cut(s) 1206
Eco47I GGWCC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 926
EcoRII CCWGG 4 cut(s) 485, 585, 1039, 1069
EcoRV GATATC 1 cut(s) 1206
EgeI GGCGCC 1 cut(s) 720
EheI GGCGCC 1 cut(s) 720
FaeI CATG 9 cut(s) 43, 188, 335, 496, 842, 866, 880, 1131, 1255
FaqI GGGAC 1 cut(s) 18
FatI CATG 9 cut(s) 39, 184, 331, 492, 838, 862, 876, 1127, 1251
FblI GTMKAC 2 cut(s) 81, 804
Fnu4HI GCNGC 1 cut(s) 647
FokI GGATG 2 cut(s) 386, 807
Fsp4HI GCNGC 1 cut(s) 647
FspBI CTAG 7 cut(s) 18, 257, 825, 872, 969, 1283, 1320
GlaI GCGC 3 cut(s) 650, 720, 1152
GluI GCNGC 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 722
HgaI GACGC 2 cut(s) 113, 1157
HhaI GCGC 3 cut(s) 651, 721, 1153
Hin1I GRCGYC 1 cut(s) 719
Hin1II CATG 9 cut(s) 43, 188, 335, 496, 842, 866, 880, 1131, 1255
Hin6I GCGC 3 cut(s) 649, 719, 1151
HinP1I GCGC 3 cut(s) 649, 719, 1151
HincII GTYRAC 3 cut(s) 337, 805, 1135
HindII GTYRAC 3 cut(s) 337, 805, 1135
HindIII AAGCTT 2 cut(s) 592, 917
HinfI GANTC 8 cut(s) 6, 83, 456, 551, 565, 749, 1006, 1162
HpaI GTTAAC 2 cut(s) 337, 1135
HphI GGTGA 2 cut(s) 320, 396
Hpy166II GTNNAC 6 cut(s) 82, 337, 404, 805, 1093, 1135
Hpy188III TCNNGA 9 cut(s) 26, 283, 560, 839, 863, 1010, 1166, 1326, 1367
Hpy8I GTNNAC 6 cut(s) 82, 337, 404, 805, 1093, 1135
Hpy99I CGWCG 3 cut(s) 27, 107, 809
HpyCH4III ACNGT 3 cut(s) 408, 1090, 1260
HpyCH4IV ACGT 3 cut(s) 369, 807, 899
HpyCH4V TGCA 7 cut(s) 356, 492, 709, 765, 883, 1049, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 706, 889
HpyF3I CTNAG 4 cut(s) 635, 753, 853, 1212
HpySE526I ACGT 3 cut(s) 369, 807, 899
Hsp92I GRCGYC 1 cut(s) 719
Hsp92II CATG 9 cut(s) 43, 188, 335, 496, 842, 866, 880, 1131, 1255
HspAI GCGC 3 cut(s) 649, 719, 1151
KasI GGCGCC 1 cut(s) 718
KspAI GTTAAC 2 cut(s) 337, 1135
LmnI GCTCC 1 cut(s) 1123
Lsp1109I GCAGC 1 cut(s) 633
LweI GCATC 3 cut(s) 471, 975, 1253
MaeI CTAG 7 cut(s) 18, 257, 825, 872, 969, 1283, 1320
MaeII ACGT 3 cut(s) 369, 807, 899
MaeIII GTNAC 2 cut(s) 305, 615
MboII GAAGA 6 cut(s) 115, 774, 860, 965, 1093, 1200
MflI RGATCY 1 cut(s) 963
MhlI GDGCHC 1 cut(s) 694
MluCI AATT 5 cut(s) 239, 415, 934, 1236, 1383
Mly113I GGCGCC 1 cut(s) 719
MlyI GAGTC 4 cut(s) 77, 465, 743, 1000
MmeI TCCRAC 2 cut(s) 139, 161
MnlI CCTC 7 cut(s) 169, 213, 310, 454, 748, 870, 1173
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 9 cut(s) 45, 336, 630, 788, 933, 1076, 1134, 1226, 1332
MslI CAYNNNNRTG 1 cut(s) 1118
MspR9I CCNGG 4 cut(s) 487, 587, 1041, 1071
MssI GTTTAAAC 1 cut(s) 46
MvaI CCWGG 4 cut(s) 487, 587, 1041, 1071
MvnI CGCG 1 cut(s) 1151
MwoI GCNNNNNNNGC 2 cut(s) 706, 889
NarI GGCGCC 1 cut(s) 719
NlaIII CATG 9 cut(s) 43, 188, 335, 496, 842, 866, 880, 1131, 1255
NlaIV GGNNCC 3 cut(s) 720, 1038, 1125
NmuCI GTSAC 1 cut(s) 615
NspI RCATGY 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 1118
PagI TCATGA 2 cut(s) 838, 862
PciI ACATGT 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 4 cut(s) 6, 551, 565, 1162
PflMI CCANNNNNTGG 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 1 cut(s) 648
Ple19I CGATCG 1 cut(s) 348
PleI GAGTC 4 cut(s) 77, 464, 743, 1000
PluTI GGCGCC 1 cut(s) 722
PmeI GTTTAAAC 1 cut(s) 46
PpsI GAGTC 4 cut(s) 77, 464, 743, 1000
PscI ACATGT 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 899
Psp6I CCWGG 4 cut(s) 485, 585, 1039, 1069
PspGI CCWGG 4 cut(s) 485, 585, 1039, 1069
PspN4I GGNNCC 3 cut(s) 720, 1038, 1125
PspPI GGNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 963
PvuI CGATCG 1 cut(s) 348
RsaI GTAC 2 cut(s) 301, 538
RsaNI GTAC 2 cut(s) 300, 537
RseI CAYNNNNRTG 1 cut(s) 1118
SalI GTCGAC 1 cut(s) 803
SaqAI TTAA 9 cut(s) 45, 336, 630, 788, 933, 1076, 1134, 1226, 1332
SatI GCNGC 1 cut(s) 647
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 4 cut(s) 77, 465, 743, 1000
ScrFI CCNGG 4 cut(s) 487, 587, 1041, 1071
SduI GDGCHC 1 cut(s) 694
SfaNI GCATC 3 cut(s) 471, 975, 1253
SfoI GGCGCC 1 cut(s) 720
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 1118
SmlI CTYRAG 5 cut(s) 224, 560, 595, 620, 1391
SmoI CTYRAG 5 cut(s) 224, 560, 595, 620, 1391
Sse9I AATT 5 cut(s) 239, 415, 934, 1236, 1383
SspDI GGCGCC 1 cut(s) 718
SspMI CTAG 7 cut(s) 18, 257, 825, 872, 969, 1283, 1320
StyD4I CCNGG 4 cut(s) 485, 585, 1039, 1069
TaaI ACNGT 3 cut(s) 408, 1090, 1260
TaiI ACGT 3 cut(s) 372, 810, 902
TaqI TCGA 7 cut(s) 25, 69, 344, 348, 459, 688, 804
TaqII GACCGA 1 cut(s) 545
TasI AATT 5 cut(s) 239, 415, 934, 1236, 1383
TatI WGTACW 1 cut(s) 536
TfiI GAWTC 4 cut(s) 6, 551, 565, 1162
Tru1I TTAA 9 cut(s) 45, 336, 630, 788, 933, 1076, 1134, 1226, 1332
Tru9I TTAA 9 cut(s) 45, 336, 630, 788, 933, 1076, 1134, 1226, 1332
TscAI CASTG 1 cut(s) 767
TseFI GTSAC 1 cut(s) 615
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 1 cut(s) 615
TspDTI ATGAA 4 cut(s) 281, 564, 1233, 1240
TspGWI ACGGA 2 cut(s) 383, 1095
TspRI CASTG 1 cut(s) 767
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 192
XceI RCATGY 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 1173
XmiI GTMKAC 2 cut(s) 81, 804
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 7 cut(s) 18, 257, 825, 872, 969, 1283, 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.