AT3G03360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016476
Physical Location & Seq
Forward (+)
794906 .. 797013
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03360.1

Sequence Viewer

Length: 1110 bp
ATGGCAGCCTGTATCAGCAGACCCGACACGCATGCTGACATCGACAGTTGGATCAACTTCGCCATGTCCCGAAACGTGGAGAATCTGTCCCTGTATCTCGATGAGGATAAATATGATATCCCTGAATTCCTTTACATCAATTCCTCTCTCAAGCAACTCTACCTTGATTTCGGCTGCAAAAAGGATTTTATATCTCTGAATCCCAAATGTTCTGTGTCTTGGACATCCCTGAAGAACCTGTCATTGTATCATTGCAACATCTCTGATGAATCCATTGCTATTATTCTATCTGGTTGTCCCATTCTCGAAAGCTTATTGTTGTTTTTCTGCAAGAAACTGAAGGTCCTTGATCTCAGCAAATCACCGCGTCTGATAACATTAGAAATCACTCGTAGATGTCGAATGGAGCCAACACAGCTCGTTGCACCACATATCCGTTGTCTCAGATTGATAAACTCTGAGAAACCATGTGCTTTAGTTGATGTCTCCTCTTTATCCCAAGCTGAACTAGACATTACCGCTTACGCAATAGTTGATAATAAACTGGAGGCTGATTTTCATCAGACCATGGTGGTAAAGATGTTAGAAAAGTGTCAGAATGTGGAGAAGCTTACTTTGGGGGCAAACTTTCTTAAGATGTTATCTCTTGCCGAGCTCCGTGGTGTTTCTTTTCCAAAGTTGAAGGCTAAAGCTCTGATACTTGAGACAATGATCTCTCGATATGTTATTCATGGTATAGTAAAGGTGCTACAAAACTCGCCTGACTTGAAGAAGCTAACCATACACCCAATGGGGTCTGCCGGCTCATATCCCATACCGGAAGAGCATATTGACATATACTTGGATTCTCATGGCTTGAATTGGGATCCATCCTGGAGCTCGGAGTTTAAGAACACTTCCCGCAGGAATGTAGAGTCAAAGCAAGTGGCTTCGTTTCTGCAACTTGTGCTTAAAACCATATCAACATTAGAGTTGATTGTCGCAAGGTTGGAAGGTTATATCAAAGGAAGACGTTTTGTAGAGTTGCGTCAGATGGTTCCAATGCTTCCTCGCAACAACGATGTCTCCATTGTGCTCAGCTCAAGAAGAAAACGATTCAGAGTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

369

Amino Acids

42.05

Weight (kDa)

8.89

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 10 - 262 3.1e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 14 - 136 2.5e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 367
AciI CCGC 3 cut(s) 365, 519, 901
AclWI GGATC 3 cut(s) 59, 860, 873
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 251, 359
AfiI CCNNNNNNNGG 1 cut(s) 76
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 3 cut(s) 682, 769, 859
AjnI CCWGG 1 cut(s) 872
AjuI GAANNNNNNNTTGG 2 cut(s) 599, 631
AluBI AGCT 9 cut(s) 312, 418, 503, 610, 655, 692, 775, 879, 1080
AluI AGCT 9 cut(s) 312, 418, 503, 610, 655, 692, 775, 879, 1080
Alw21I GWGCWC 3 cut(s) 657, 881, 1077
Alw26I GTCTC 4 cut(s) 446, 490, 698, 1069
AlwI GGATC 3 cut(s) 59, 860, 873
ApeKI GCWGC 2 cut(s) 5, 174
ApoI RAATTY 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 343
BamHI GGATCC 1 cut(s) 865
BanII GRGCYC 2 cut(s) 657, 881
BbsI GAAGAC 1 cut(s) 1015
Bbv12I GWGCWC 3 cut(s) 657, 881, 1077
BbvI GCAGC 2 cut(s) 17, 161
BccI CCATC 2 cut(s) 877, 1027
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 874
BcoDI GTCTC 4 cut(s) 446, 490, 698, 1069
BfaI CTAG 1 cut(s) 509
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 2 cut(s) 6, 175
BlpI GCTNAGC 1 cut(s) 1076
BlsI GCNGC 2 cut(s) 7, 176
Bme1390I CCNGG 1 cut(s) 874
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 3 cut(s) 408, 867, 1038
BmrFI CCNGG 1 cut(s) 874
BpiI GAAGAC 1 cut(s) 1015
BpmI CTGGAG 2 cut(s) 566, 895
Bpu1102I GCTNAGC 1 cut(s) 1076
BpuEI CTTGAG 3 cut(s) 134, 722, 1066
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 567, 658
BsaWI WCCGGW 1 cut(s) 817
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 1049, 1079
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 800
Bse1I ACTGG 1 cut(s) 549
Bse3DI GCAATG 2 cut(s) 250, 273
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 874
BseDI CCNNGG 2 cut(s) 567, 658
BseGI GGATG 2 cut(s) 224, 869
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 250, 273
BseMII CTCAG 4 cut(s) 367, 450, 457, 1090
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 1 cut(s) 478
BseXI GCAGC 2 cut(s) 17, 161
Bsh1236I CGCG 1 cut(s) 367
BsiHKAI GWGCWC 3 cut(s) 657, 881, 1077
BsiSI CCGG 2 cut(s) 801, 818
BslFI GGGAC 3 cut(s) 52, 73, 282
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 4 cut(s) 446, 490, 698, 1069
BsmFI GGGAC 3 cut(s) 52, 73, 282
Bsp1286I GDGCHC 3 cut(s) 657, 881, 1077
Bsp143I GATC 4 cut(s) 51, 349, 711, 865
Bsp1720I GCTNAGC 1 cut(s) 1076
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 3 cut(s) 365, 519, 901
BspCNI CTCAG 4 cut(s) 366, 451, 456, 1089
BspFNI CGCG 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 408, 867, 1038
BspPI GGATC 3 cut(s) 59, 860, 873
BspQI GCTCTTC 1 cut(s) 816
BspTI CTTAAG 1 cut(s) 632
BsrDI GCAATG 2 cut(s) 250, 273
BsrFI RCCGGY 1 cut(s) 800
BsrI ACTGG 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 800
BssECI CCNNGG 2 cut(s) 567, 658
BssMI GATC 4 cut(s) 51, 349, 711, 865
BssT1I CCWWGG 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 874
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 816
BstAFI CTTAAG 1 cut(s) 632
BstAPI GCANNNNNTGC 1 cut(s) 946
BstC8I GCNNGC 2 cut(s) 33, 802
BstDEI CTNAG 4 cut(s) 353, 443, 459, 1076
BstDSI CCRYGG 2 cut(s) 567, 658
BstF5I GGATG 2 cut(s) 224, 869
BstFNI CGCG 1 cut(s) 367
BstKTI GATC 4 cut(s) 54, 352, 714, 868
BstMAI GTCTC 4 cut(s) 446, 490, 698, 1069
BstMBI GATC 4 cut(s) 51, 349, 711, 865
BstMWI GCNNNNNNNGC 2 cut(s) 415, 946
BstNI CCWGG 1 cut(s) 874
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 872
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 2 cut(s) 17, 161
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 1 cut(s) 865
BstYI RGATCY 1 cut(s) 865
BtgI CCRYGG 2 cut(s) 567, 658
BtsCI GGATG 2 cut(s) 224, 869
Cac8I GCNNGC 2 cut(s) 33, 802
Cfr10I RCCGGY 1 cut(s) 800
Cfr13I GGNCC 1 cut(s) 343
CseI GACGC 2 cut(s) 356, 1016
CspCI CAANNNNNGTGG 2 cut(s) 906, 941
CviAII CATG 6 cut(s) 32, 64, 468, 568, 731, 851
DdeI CTNAG 4 cut(s) 353, 443, 459, 1076
DpnI GATC 4 cut(s) 53, 351, 713, 867
DpnII GATC 4 cut(s) 51, 349, 711, 865
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
Ecl136II GAGCTC 2 cut(s) 655, 879
Eco130I CCWWGG 1 cut(s) 567
Eco24I GRGCYC 2 cut(s) 657, 881
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 343
Eco53kI GAGCTC 2 cut(s) 655, 879
Eco57I CTGAAG 2 cut(s) 251, 359
EcoICRI GAGCTC 2 cut(s) 655, 879
EcoO109I RGGNCCY 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 872
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 567
EcoT38I GRGCYC 2 cut(s) 657, 881
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 6 cut(s) 35, 67, 471, 571, 734, 854
FaqI GGGAC 3 cut(s) 52, 73, 282
FatI CATG 6 cut(s) 31, 63, 467, 567, 730, 850
FauI CCCGC 1 cut(s) 908
Fnu4HI GCNGC 2 cut(s) 6, 175
FokI GGATG 2 cut(s) 211, 856
FriOI GRGCYC 2 cut(s) 657, 881
Fsp4HI GCNGC 2 cut(s) 6, 175
FspBI CTAG 1 cut(s) 509
GluI GCNGC 2 cut(s) 6, 175
GsuI CTGGAG 2 cut(s) 566, 895
HapII CCGG 2 cut(s) 801, 818
HgaI GACGC 2 cut(s) 356, 1016
Hin1II CATG 6 cut(s) 35, 67, 471, 571, 734, 854
HindIII AAGCTT 2 cut(s) 310, 608
HinfI GANTC 6 cut(s) 82, 199, 269, 845, 914, 1095
HpaII CCGG 2 cut(s) 801, 818
HphI GGTGA 1 cut(s) 354
Hpy188III TCNNGA 5 cut(s) 69, 98, 305, 717, 1083
HpyAV CCTTC 3 cut(s) 334, 676, 986
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 75, 1012
HpyCH4V TGCA 5 cut(s) 177, 255, 330, 425, 940
HpyF10VI GCNNNNNNNGC 2 cut(s) 415, 946
HpyF3I CTNAG 4 cut(s) 353, 443, 459, 1076
HpySE526I ACGT 2 cut(s) 75, 1012
Hsp92II CATG 6 cut(s) 35, 67, 471, 571, 734, 854
KroI GCCGGC 1 cut(s) 800
KroNI GCCGGC 1 cut(s) 802
Kzo9I GATC 4 cut(s) 51, 349, 711, 865
LguI GCTCTTC 1 cut(s) 816
LmnI GCTCC 3 cut(s) 406, 660, 876
Lsp1109I GCAGC 2 cut(s) 17, 161
MaeI CTAG 1 cut(s) 509
MaeII ACGT 2 cut(s) 75, 1012
MaeIII GTNAC 1 cut(s) 1102
MalI GATC 4 cut(s) 53, 351, 713, 867
MboI GATC 4 cut(s) 51, 349, 711, 865
MboII GAAGA 5 cut(s) 244, 781, 833, 1020, 1098
MflI RGATCY 1 cut(s) 865
MhlI GDGCHC 3 cut(s) 657, 881, 1077
MluCI AATT 3 cut(s) 125, 139, 859
MlyI GAGTC 1 cut(s) 923
MmeI TCCRAC 2 cut(s) 29, 969
MnlI CCTC 5 cut(s) 97, 154, 499, 541, 1059
MroNI GCCGGC 1 cut(s) 800
MseI TTAA 4 cut(s) 633, 888, 951, 1108
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 2 cut(s) 801, 818
MspR9I CCNGG 1 cut(s) 874
MvaI CCWGG 1 cut(s) 874
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 415, 946
NaeI GCCGGC 1 cut(s) 802
NcoI CCATGG 1 cut(s) 567
NdeII GATC 4 cut(s) 51, 349, 711, 865
NgoMIV GCCGGC 1 cut(s) 800
NlaIII CATG 6 cut(s) 35, 67, 471, 571, 734, 854
NlaIV GGNNCC 3 cut(s) 408, 867, 1038
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 1102
NspI RCATGY 1 cut(s) 35
PaeI GCATGC 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 816
PcsI WCGNNNNNNNCGW 1 cut(s) 397
PdiI GCCGGC 1 cut(s) 802
PfeI GAWTC 5 cut(s) 82, 199, 269, 845, 1095
PfoI TCCNGGA 1 cut(s) 872
PkrI GCNGC 2 cut(s) 7, 176
PleI GAGTC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 922
PpuMI RGGWCCY 1 cut(s) 343
Psp124BI GAGCTC 2 cut(s) 657, 881
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 872
PspGI CCWGG 1 cut(s) 872
PspN4I GGNNCC 3 cut(s) 408, 867, 1038
PspPI GGNCC 1 cut(s) 343
PspPPI RGGWCCY 1 cut(s) 343
PsuI RGATCY 1 cut(s) 865
SacI GAGCTC 2 cut(s) 657, 881
SapI GCTCTTC 1 cut(s) 816
SaqAI TTAA 4 cut(s) 633, 888, 951, 1108
SatI GCNGC 2 cut(s) 6, 175
Sau3AI GATC 4 cut(s) 51, 349, 711, 865
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 1 cut(s) 923
ScrFI CCNGG 1 cut(s) 874
SduI GDGCHC 3 cut(s) 657, 881, 1077
SinI GGWCC 1 cut(s) 343
SmlI CTYRAG 4 cut(s) 149, 632, 701, 1081
SmoI CTYRAG 4 cut(s) 149, 632, 701, 1081
SphI GCATGC 1 cut(s) 35
Sse9I AATT 3 cut(s) 125, 139, 859
SsiI CCGC 3 cut(s) 365, 519, 901
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 2 cut(s) 657, 881
StyD4I CCNGG 1 cut(s) 872
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 2 cut(s) 78, 1015
TaqI TCGA 5 cut(s) 42, 99, 306, 400, 718
TasI AATT 3 cut(s) 125, 139, 859
TfiI GAWTC 5 cut(s) 82, 199, 269, 845, 1095
Tru1I TTAA 4 cut(s) 633, 888, 951, 1108
Tru9I TTAA 4 cut(s) 633, 888, 951, 1108
TseFI GTSAC 1 cut(s) 1102
TseI GCWGC 2 cut(s) 5, 174
Tsp45I GTSAC 1 cut(s) 1102
TspDTI ATGAA 3 cut(s) 282, 548, 719
TspGWI ACGGA 2 cut(s) 425, 647
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.