Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016476

Physical Location & Seq

Genomic Coordinates Reverse (-)

21366721 .. 21368150

Gene Structure 1430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G57690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCAGACAACTCGGCCACCCGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAAATCAAAGGAGAAGTTGACATAATTAGCTCTTTACCCGATGTGATCCTTCAACATATTCTCTTCTCTTTTCAGACGAAATACGCCATCAGAACTTCCGTCTTGTCAAAACGATGGAGGCATGAAGCTGATGCCATAAACAAAGCCCTAAGTCAATACACAGCTCCCAAGATGATGAATTTTCATCTCAAAATCAACAAGAATAACAGTCTTCATCACATCAAGAAGTGGACCGAATTTGCCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCGTTTTCGTTCTAACAAGATTCCTCGTTTCTACGAGATCAATTCCTCTGTCAAGTCACTCAGCCATAGGTTAGATTTGCATGATGTGATTCCCCGACACGGTGTGTCTTGGACATCCTTGAAGAAGTTTTCCTTGAGTTATTGTGGGTTACCTGATGAATCTGCTAAGATTTTATCTGGTTGTCCGATTCTCGAATGGCCAATGCAGATTGTGGCACCACAGATCCATTGTCTCAAATTGAGAAACACTCAATTACCATGTACTTTAGTTGATGTCTCATCCTTAACCGAAGCTGAAGTACTGGACATTATCATCTTCCCAGTGAACCTGTCCTACAATGCTGATTTTCTTCATGCCACGATGCTAGAGATGCTAAAAAAGTTAAAGAATGTAGAGAAGCTTACTTTTAGTGGAAGCTATCTTCAGAATTTGTCTGTTGCCGAGAAACGTGGTGTTCCTTTTCCAATGTTCAAGGTCAAAGCTTTGACTCTTGAGATGAAACACTTTGTAATTTCTGATATAGAAAGAATGTTACAAAGCTCACCTAATTTAAAGAAGCTAACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTTACAGATACTTTGCAAGGCTTGAATCTGGATCAATGCTCGAGCTCAAAAAAGGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_2

Protein Analysis

330

Amino Acids

37.94

Weight (kDa)

9.81

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	28 - 60	7.4e-06	F-box domain
LRR_At5g56370	PF24758	94 - 301	5.8e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49610 AT1G57690 AT2G39415 AT3G03360 AT3G28410 AT5G02700 AT5G02910 AT5G02910 AT5G02910 AT5G02920 AT5G02930 AT5G03100 AT5G03100
rosa_laevigata	RLG00000002742

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AccII	CGCG	1 cut(s)	906
AciI	CCGC	2 cut(s)	43, 307
AclWI	GGATC	3 cut(s)	97, 553, 970
AcoI	YGGCCR	2 cut(s)	15, 533
AcsI	RAATTY	3 cut(s)	235, 293, 763
AcuI	CTGAAG	2 cut(s)	651, 743
AdeI	CACNNNGTG	1 cut(s)	439
AfaI	GTAC	3 cut(s)	598, 636, 903
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	110, 457, 808, 956
Alw21I	GWGCWC	1 cut(s)	978
Alw26I	GTCTC	2 cut(s)	572, 616
AlwI	GGATC	3 cut(s)	97, 553, 970
Ama87I	CYCGRG	1 cut(s)	971
AoxI	GGCC	2 cut(s)	15, 533
ApoI	RAATTY	3 cut(s)	235, 293, 763
ArsI	GACNNNNNNTTYG	1 cut(s)	972
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	870
AvaI	CYCGRG	1 cut(s)	971
AvaII	GGWCC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	535
BanI	GGYRCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	978
BarI	GAAGNNNNNNTAC	4 cut(s)	618, 650, 917, 949
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	978
BccI	CCATC	2 cut(s)	152, 165
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	572, 616
BfaI	CTAG	2 cut(s)	36, 701
BmcAI	AGTACT	1 cut(s)	636
Bme18I	GGWCC	1 cut(s)	288
BmeT110I	CYCGRG	1 cut(s)	971
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	3 cut(s)	178, 687, 696
BmuI	ACTGGG	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
BpuEI	CTTGAG	2 cut(s)	490, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	642, 656
BseGI	GGATG	2 cut(s)	449, 614
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	409
BseNI	ACTGG	2 cut(s)	642, 656
Bsh1236I	CGCG	1 cut(s)	906
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	17, 535
BshNI	GGYRCC	1 cut(s)	550
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	978
BsiHKCI	CYCGRG	1 cut(s)	971
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	3 cut(s)	17, 289, 310
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	2 cut(s)	572, 616
BsmFI	GGGAC	3 cut(s)	17, 289, 310
BsnI	GGCC	2 cut(s)	17, 535
BsoBI	CYCGRG	1 cut(s)	971
Bsp1286I	GDGCHC	1 cut(s)	978
Bsp143I	GATC	4 cut(s)	102, 372, 558, 962
BspACI	CCGC	2 cut(s)	43, 307
BspANI	GGCC	2 cut(s)	17, 535
BspCNI	CTCAG	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	1 cut(s)	552
BspPI	GGATC	3 cut(s)	97, 553, 970
BspT107I	GGYRCC	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	642, 656
BssMI	GATC	4 cut(s)	102, 372, 558, 962
Bst4CI	ACNGT	4 cut(s)	50, 266, 437, 901
Bst6I	CTCTTC	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	206, 395, 501
BstEII	GGTNACC	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	449, 614
BstFNI	CGCG	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	4 cut(s)	105, 375, 561, 965
BstMAI	GTCTC	2 cut(s)	572, 616
BstMBI	GATC	4 cut(s)	102, 372, 558, 962
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 706
BstPI	GGTNACC	1 cut(s)	483
BstUI	CGCG	1 cut(s)	906
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	17, 535
BtsCI	GGATG	2 cut(s)	449, 614
BtsIMutI	CAGTG	1 cut(s)	663
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	597, 635, 902
CviAII	CATG	5 cut(s)	179, 301, 416, 594, 689
CviQI	GTAC	3 cut(s)	597, 635, 902
DdeI	CTNAG	3 cut(s)	206, 395, 501
DpnI	GATC	4 cut(s)	104, 374, 560, 964
DpnII	GATC	4 cut(s)	102, 372, 558, 962
DraI	TTTAAA	1 cut(s)	888
DraIII	CACNNNGTG	1 cut(s)	439
EaeI	YGGCCR	2 cut(s)	15, 533
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	976
Eco24I	GRGCYC	1 cut(s)	978
Eco47I	GGWCC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	976
Eco57I	CTGAAG	2 cut(s)	651, 743
Eco88I	CYCGRG	1 cut(s)	971
Eco91I	GGTNACC	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	976
EcoO65I	GGTNACC	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	978
FaeI	CATG	5 cut(s)	182, 304, 419, 597, 692
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	3 cut(s)	17, 289, 310
FatI	CATG	5 cut(s)	178, 300, 415, 593, 688
FauI	CCCGC	1 cut(s)	314
FokI	GGATG	2 cut(s)	436, 601
FriOI	GRGCYC	1 cut(s)	978
FspBI	CTAG	2 cut(s)	36, 701
GlaI	GCGC	1 cut(s)	907
HaeIII	GGCC	2 cut(s)	17, 535
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	908
Hin1II	CATG	5 cut(s)	182, 304, 419, 597, 692
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	2 cut(s)	734, 816
HinfI	GANTC	7 cut(s)	30, 355, 424, 494, 523, 823, 956
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	870
Hpy166II	GTNNAC	3 cut(s)	76, 288, 661
Hpy188I	TCNGA	5 cut(s)	132, 149, 522, 762, 853
Hpy188III	TCNNGA	4 cut(s)	280, 527, 827, 960
Hpy8I	GTNNAC	3 cut(s)	76, 288, 661
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	4 cut(s)	50, 266, 437, 901
HpyCH4IV	ACGT	2 cut(s)	312, 784
HpyCH4V	TGCA	3 cut(s)	415, 541, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 706
HpyF3I	CTNAG	3 cut(s)	206, 395, 501
HpySE526I	ACGT	2 cut(s)	312, 784
Hsp92II	CATG	5 cut(s)	182, 304, 419, 597, 692
HspAI	GCGC	1 cut(s)	906
Kzo9I	GATC	4 cut(s)	102, 372, 558, 962
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	68, 498, 501, 623, 669, 677, 945
LweI	GCATC	3 cut(s)	178, 687, 696
MaeI	CTAG	2 cut(s)	36, 701
MaeII	ACGT	2 cut(s)	312, 784
MaeIII	GTNAC	3 cut(s)	390, 483, 867
MalI	GATC	4 cut(s)	104, 374, 560, 964
MboI	GATC	4 cut(s)	102, 372, 558, 962
MboII	GAAGA	6 cut(s)	112, 260, 469, 643, 677, 749
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	1 cut(s)	978
MlsI	TGGCCA	1 cut(s)	535
MluCI	AATT	9 cut(s)	81, 235, 293, 376, 572, 587, 763, 846, 883
MluNI	TGGCCA	1 cut(s)	535
MlyI	GAGTC	2 cut(s)	39, 817
MnlI	CCTC	3 cut(s)	168, 369, 391
Mox20I	TGGCCA	1 cut(s)	535
MscI	TGGCCA	1 cut(s)	535
MseI	TTAA	3 cut(s)	620, 719, 887
Msp20I	TGGCCA	1 cut(s)	535
MspI	CCGG	1 cut(s)	55
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	2 cut(s)	51, 706
NdeII	GATC	4 cut(s)	102, 372, 558, 962
NlaIII	CATG	5 cut(s)	182, 304, 419, 597, 692
NlaIV	GGNNCC	1 cut(s)	552
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	971
PfeI	GAWTC	5 cut(s)	355, 424, 494, 523, 956
PleI	GAGTC	2 cut(s)	38, 817
PpsI	GAGTC	2 cut(s)	38, 817
Psp124BI	GAGCTC	1 cut(s)	978
PspEI	GGTNACC	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	288
PspXI	VCTCGAGB	1 cut(s)	971
PsrI	GAACNNNNNNTAC	2 cut(s)	653, 685
PsuI	RGATCY	1 cut(s)	558
RsaI	GTAC	3 cut(s)	598, 636, 903
RsaNI	GTAC	3 cut(s)	597, 635, 902
SacI	GAGCTC	1 cut(s)	978
SaqAI	TTAA	3 cut(s)	620, 719, 887
Sau3AI	GATC	4 cut(s)	102, 372, 558, 962
Sau96I	GGNCC	1 cut(s)	288
ScaI	AGTACT	1 cut(s)	636
SchI	GAGTC	2 cut(s)	39, 817
SduI	GDGCHC	1 cut(s)	978
SfaNI	GCATC	3 cut(s)	178, 687, 696
Sfr274I	CTCGAG	1 cut(s)	971
SinI	GGWCC	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	971
SmlI	CTYRAG	3 cut(s)	469, 827, 971
SmoI	CTYRAG	3 cut(s)	469, 827, 971
Sse9I	AATT	9 cut(s)	81, 235, 293, 376, 572, 587, 763, 846, 883
SsiI	CCGC	2 cut(s)	43, 307
SspMI	CTAG	2 cut(s)	36, 701
SstI	GAGCTC	1 cut(s)	978
TaaI	ACNGT	4 cut(s)	50, 266, 437, 901
TaiI	ACGT	2 cut(s)	315, 787
TaqI	TCGA	2 cut(s)	528, 972
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	9 cut(s)	81, 235, 293, 376, 572, 587, 763, 846, 883
TatI	WGTACW	2 cut(s)	596, 634
TfiI	GAWTC	5 cut(s)	355, 424, 494, 523, 956
Tru1I	TTAA	3 cut(s)	620, 719, 887
Tru9I	TTAA	3 cut(s)	620, 719, 887
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	390
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	7 cut(s)	195, 230, 248, 260, 507, 677, 848
TspGWI	ACGGA	2 cut(s)	145, 326
TspRI	CASTG	1 cut(s)	663
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	3 cut(s)	235, 293, 763
XhoI	CTCGAG	1 cut(s)	971
XspI	CTAG	2 cut(s)	36, 701
ZrmI	AGTACT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.