AT2G39415

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016476
Physical Location & Seq
Reverse (-)
16458607 .. 16459014
408 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39415.1

Sequence Viewer

Length: 360 bp
ATGGCAGAGGCAGACGACGGCGGAAACGGAGACGGTGCCACCGCCGGTGACTGCTACGCTCATCATCACTACAGAGATGTCAAACTAGCAAGAGATGCAAGTGAAAATATAGACTCAATCAGCTCGCTTCCTGATGTGATCCTCCAACAAATCCTCTCCTCTCTTCCGACCAATTTAGCTATCAGAACTTCAGTCTTGTCCACACGATGGAGGCATGTATGGTCTGACACACCTTACATATACTTTGATGGACCAGGAACTTTGTATAGGGGACTGAAGGCTGATACGATAAACAAAACCCTAGCTCGATACAAGCTTCCCAAGATTATGAGTTTTCACCTCTATACCAAAATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

119

Amino Acids

13.33

Weight (kDa)

6.96

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 40 - 76 1.2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 2 cut(s) 21, 42
AclWI GGATC 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 174, 296
AfiI CCNNNNNNNGG 1 cut(s) 207
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 4 cut(s) 123, 179, 305, 316
AluI AGCT 4 cut(s) 123, 179, 305, 316
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 59, 329
AvaII GGWCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 35
BccI CCATC 2 cut(s) 201, 242
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 2 cut(s) 86, 302
BfmI CTRYAG 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 44
BseBI CCWGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 2 cut(s) 21, 42
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 251
CviAII CATG 1 cut(s) 215
CviJI RGCY 5 cut(s) 123, 179, 281, 305, 316
CviKI_1 RGCY 5 cut(s) 123, 179, 281, 305, 316
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 2 cut(s) 174, 296
EcoRII CCWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 218
FaiI YATR 8 cut(s) 110, 216, 220, 239, 241, 267, 329, 345
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 214
FspBI CTAG 2 cut(s) 86, 302
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 59, 329
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 3 cut(s) 168, 185, 226
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 4 cut(s) 58, 144, 240, 267
LweI GCATC 1 cut(s) 85
MaeI CTAG 2 cut(s) 86, 302
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 155
MluCI AATT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 2 cut(s) 169, 191
MnlI CCTC 5 cut(s) 152, 164, 169, 204, 350
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 207
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 251
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 255
SetI ASST 6 cut(s) 125, 181, 235, 307, 318, 342
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 70
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 1 cut(s) 251
Sse9I AATT 1 cut(s) 172
SsiI CCGC 2 cut(s) 21, 42
SspI AATATT 1 cut(s) 354
SspMI CTAG 2 cut(s) 86, 302
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 307
TasI AATT 1 cut(s) 172
TseFI GTSAC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 251
XceI RCATGY 1 cut(s) 218
XspI CTAG 2 cut(s) 86, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.