AT1G50720

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015225
Physical Location & Seq
Reverse (-)
18789127 .. 18789687
561 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50720.1

Sequence Viewer

Length: 465 bp
ATGGGGCATAGAAATACCGTATTGACAATACTTCTAACCATTTCTATAGCCATAATGGTACTCATTGCTACAGTATTTGTTAGCAACAACAAAACAGAAACGTTGTTACAAACGCATACGCAGACGCAAACGCTAATTACAACGGGAAGGGTGAGCCGTTTCTTAGCGCAAAACGCAAAGAACGGTCGTAATCTTAACGCAGCGGATCATTGCAATAAAGAAGAGGAGATATGCAAGAGTCAAGGAATGTACAACTCAACCATGGCGTGTTGTAGCAACAAGTGTGTTGATCTGGCGTACGATAACGATAACTGTGGCGCATGTAAGAACCAATGCAAGTTCACGCAGACTTGTTGTAGAGGAGAGTGCGTTTACTTAGCTTATGATAAGAGGCATTGTGGGGAGTGCAACCATAGTTGTTTGGTTGGTGAGTTTTGTGTCTATGGGTTGTGTAATTACGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

7.86

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 69 - 154 2.7e-28 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50720 AT4G26880 AT5G55110
fragaria_vesca FvH4_3g23190
malus_domestica MD03G1197000.v1.1 MD11G1213000.v1.1
prunus_persica Prupe.4G218300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040831
rosa_laevigata RLG00000034006
rosa_multiflora Rmu_sc0001579.1_g000006
rosa_roxburghii Rroxscaffold_1G00039870
rosa_rugosa Rorug05G0188000
rosa_samantha Rh5BG278600 Rh5CG310600 Rh5DG286500
rosa_wichuraiana Rw5G025710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 203
AclI AACGTT 1 cut(s) 101
AclWI GGATC 1 cut(s) 213
AfaI GTAC 3 cut(s) 60, 251, 299
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 200
AspLEI GCGC 2 cut(s) 169, 320
AsuHPI GGTGA 2 cut(s) 163, 440
BbvI GCAGC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 141
BfmI CTRYAG 2 cut(s) 45, 69
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bse3DI GCAATG 2 cut(s) 63, 208
BseDI CCNNGG 1 cut(s) 261
BseMI GCAATG 2 cut(s) 63, 208
BseRI GAGGAG 2 cut(s) 239, 375
BseXI GCAGC 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 187
BsiWI CGTACG 1 cut(s) 297
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 2 cut(s) 205, 289
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 63, 208
BsrGI TGTACA 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 205, 289
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 4 cut(s) 19, 73, 185, 314
Bst6I CTCTTC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 163, 376
BstDSI CCRYGG 1 cut(s) 261
BstHHI GCGC 2 cut(s) 169, 320
BstKTI GATC 2 cut(s) 208, 292
BstMBI GATC 2 cut(s) 205, 289
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 324
BstSFI CTRYAG 2 cut(s) 45, 69
BstV1I GCAGC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 261
CfoI GCGC 2 cut(s) 169, 320
CseI GACGC 1 cut(s) 133
Csp6I GTAC 3 cut(s) 59, 250, 298
CviAII CATG 3 cut(s) 262, 321, 462
CviJI RGCY 3 cut(s) 50, 156, 380
CviKI_1 RGCY 3 cut(s) 50, 156, 380
CviQI GTAC 3 cut(s) 59, 250, 298
DdeI CTNAG 2 cut(s) 163, 376
DpnI GATC 2 cut(s) 207, 291
DpnII GATC 2 cut(s) 205, 289
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 3 cut(s) 265, 324, 465
FatI CATG 3 cut(s) 261, 320, 461
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 2 cut(s) 168, 319
GluI GCNGC 1 cut(s) 201
HgaI GACGC 1 cut(s) 133
HhaI GCGC 2 cut(s) 169, 320
Hin1II CATG 3 cut(s) 265, 324, 465
Hin6I GCGC 2 cut(s) 167, 318
HinP1I GCGC 2 cut(s) 167, 318
HinfI GANTC 1 cut(s) 238
HphI GGTGA 2 cut(s) 163, 440
Hpy166II GTNNAC 2 cut(s) 342, 373
Hpy8I GTNNAC 2 cut(s) 342, 373
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 4 cut(s) 19, 73, 185, 314
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 4 cut(s) 213, 234, 336, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 163, 376
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 3 cut(s) 265, 324, 465
HspAI GCGC 2 cut(s) 167, 318
Kzo9I GATC 2 cut(s) 205, 289
LpnPI CCDG 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 212
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 207, 291
MboI GATC 2 cut(s) 205, 289
MboII GAAGA 1 cut(s) 233
MluCI AATT 2 cut(s) 135, 454
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 3 cut(s) 217, 353, 384
MseI TTAA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 173
NcoI CCATGG 1 cut(s) 261
NdeII GATC 2 cut(s) 205, 289
NlaIII CATG 3 cut(s) 265, 324, 465
NspI RCATGY 1 cut(s) 324
Pfl23II CGTACG 1 cut(s) 297
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 101
PspLI CGTACG 1 cut(s) 297
RsaI GTAC 3 cut(s) 60, 251, 299
RsaNI GTAC 3 cut(s) 59, 250, 298
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 205, 289
SchI GAGTC 1 cut(s) 247
SetI ASST 2 cut(s) 104, 382
SfcI CTRYAG 2 cut(s) 45, 69
Sse9I AATT 2 cut(s) 135, 454
SsiI CCGC 1 cut(s) 203
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 4 cut(s) 19, 73, 185, 314
TaiI ACGT 1 cut(s) 104
TasI AATT 2 cut(s) 135, 454
TatI WGTACW 1 cut(s) 249
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 1 cut(s) 200
XceI RCATGY 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.