AT4G26880

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015225
Physical Location & Seq
Reverse (-)
13508042 .. 13508813
772 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26880.1

Sequence Viewer

Length: 459 bp
ATGGCCTTCGTGAAGCTACTCGTGTCCATTGCAATAACAACCGCAATCACAATCGCAGTCATCACAACCATAACCAACAATACAACCACCATTAGAGAGTACACAAGCTTTGATGCACCGAGTACGCCGACTATAAGGCCGAACCGGTTATTGGCTCAAAAGGAAGTAGGCGAGCGAAACCCTAACGCTGCAGACCATTGCAACAGGAACCCTGAGATATGTACCCCCTACGGAGGGGGAGGAAGCAACTCGACGATGACATGCTGCAACAATAAGTGCATAGACGTGTCCAGTGACGACAATAACTGTGGCGCGTGTAAGAACAAATGCAAGTTCTCACAGACGTGTTGTCGCGGCCAATGTGTTTACGTAGCTTACGATAAACGCCATTGTGGACAGTGTAACCATCCGTGTGAGCTGGGCGAGTTCTGCGTCTACGGTCTATGTAACTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

152

Amino Acids

16.54

Weight (kDa)

7.86

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 65 - 152 1.6e-28 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015225)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50720 AT4G26880 AT5G55110
fragaria_vesca FvH4_3g23190
malus_domestica MD03G1197000.v1.1 MD11G1213000.v1.1
prunus_persica Prupe.4G218300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0040831
rosa_laevigata RLG00000034006
rosa_multiflora Rmu_sc0001579.1_g000006
rosa_roxburghii Rroxscaffold_1G00039870
rosa_rugosa Rorug05G0188000
rosa_samantha Rh5BG278600 Rh5CG310600 Rh5DG286500
rosa_wichuraiana Rw5G025710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 435
AccII CGCG 2 cut(s) 314, 354
AciI CCGC 2 cut(s) 42, 354
AcoI YGGCCR 1 cut(s) 355
AfaI GTAC 3 cut(s) 101, 124, 223
AfiI CCNNNNNNNGG 3 cut(s) 151, 233, 234
AflIII ACRYGT 2 cut(s) 285, 344
AgeI ACCGGT 1 cut(s) 144
AhdI GACNNNNNGTC 1 cut(s) 348
AjiI CACGTC 2 cut(s) 286, 345
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AleI CACNNNNGTG 1 cut(s) 343
AluBI AGCT 4 cut(s) 16, 108, 374, 418
AluI AGCT 4 cut(s) 16, 108, 374, 418
AoxI GGCC 3 cut(s) 3, 137, 355
ApeKI GCWGC 2 cut(s) 188, 264
AsiGI ACCGGT 1 cut(s) 144
AspLEI GCGC 1 cut(s) 314
BauI CACGAG 1 cut(s) 20
BbvI GCAGC 2 cut(s) 175, 251
BccI CCATC 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 3 cut(s) 189, 265, 355
BlsI GCNGC 3 cut(s) 190, 266, 356
BmeRI GACNNNNNGTC 1 cut(s) 348
BmgBI CACGTC 2 cut(s) 286, 345
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 370
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 233, 234
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 291
Bse3DI GCAATG 2 cut(s) 27, 196
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 3 cut(s) 151, 233, 234
BseMI GCAATG 2 cut(s) 27, 196
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 2 cut(s) 175, 251
BseYI CCCAGC 1 cut(s) 418
Bsh1236I CGCG 2 cut(s) 314, 354
BshFI GGCC 3 cut(s) 5, 139, 357
BshTI ACCGGT 1 cut(s) 144
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 151, 233, 234
BsnI GGCC 3 cut(s) 5, 139, 357
BspACI CCGC 2 cut(s) 42, 354
BspANI GGCC 3 cut(s) 5, 139, 357
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 2 cut(s) 314, 354
BspLI GGNNCC 1 cut(s) 209
BspMAI CTGCAG 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 27, 196
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 144
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 308, 399, 440
BstBAI YACGTR 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 2 cut(s) 314, 354
BstHHI GCGC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 189
BstSNI TACGTA 1 cut(s) 370
BstUI CGCG 2 cut(s) 314, 354
BstV1I GCAGC 2 cut(s) 175, 251
BsuRI GGCC 3 cut(s) 5, 139, 357
BtrI CACGTC 2 cut(s) 286, 345
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 298, 404
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 144
CseI GACGC 1 cut(s) 421
Csp6I GTAC 3 cut(s) 100, 123, 222
CspAI ACCGGT 1 cut(s) 144
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 1 cut(s) 261
CviJI RGCY 8 cut(s) 5, 16, 108, 139, 155, 357, 374, 418
CviKI_1 RGCY 8 cut(s) 5, 16, 108, 139, 155, 357, 374, 418
CviQI GTAC 3 cut(s) 100, 123, 222
DdeI CTNAG 1 cut(s) 213
DriI GACNNNNNGTC 1 cut(s) 348
EaeI YGGCCR 1 cut(s) 355
Eam1105I GACNNNNNGTC 1 cut(s) 348
Eco105I TACGTA 1 cut(s) 370
FaeI CATG 1 cut(s) 264
FaiI YATR 7 cut(s) 71, 134, 220, 262, 281, 445, 453
FatI CATG 1 cut(s) 260
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 189, 265, 355
FokI GGATG 1 cut(s) 393
Fsp4HI GCNGC 3 cut(s) 189, 265, 355
GlaI GCGC 1 cut(s) 313
GluI GCNGC 3 cut(s) 189, 265, 355
GsaI CCCAGC 1 cut(s) 422
HaeIII GGCC 3 cut(s) 5, 139, 357
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 421
HhaI GCGC 1 cut(s) 314
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 106
HpaII CCGG 1 cut(s) 145
Hpy166II GTNNAC 4 cut(s) 102, 367, 395, 436
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 4 cut(s) 102, 367, 395, 436
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 3 cut(s) 308, 399, 440
HpyCH4IV ACGT 3 cut(s) 285, 344, 369
HpyCH4V TGCA 7 cut(s) 32, 116, 191, 201, 267, 279, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 3 cut(s) 285, 344, 369
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 1 cut(s) 312
LpnPI CCDG 5 cut(s) 158, 190, 225, 304, 404
Lsp1109I GCAGC 2 cut(s) 175, 251
LweI GCATC 1 cut(s) 103
MaeII ACGT 3 cut(s) 285, 344, 369
MaeIII GTNAC 3 cut(s) 293, 401, 446
MnlI CCTC 2 cut(s) 227, 233
MslI CAYNNNNRTG 3 cut(s) 284, 343, 411
MspI CCGG 1 cut(s) 145
MvnI CGCG 2 cut(s) 314, 354
MwoI GCNNNNNNNGC 1 cut(s) 429
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 264
OliI CACNNNNGTG 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 3 cut(s) 190, 266, 356
Ppu21I YACGTR 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 193
RsaI GTAC 3 cut(s) 101, 124, 223
RsaNI GTAC 3 cut(s) 100, 123, 222
RseI CAYNNNNRTG 3 cut(s) 284, 343, 411
SatI GCNGC 3 cut(s) 189, 265, 355
SetI ASST 7 cut(s) 18, 110, 288, 347, 372, 376, 420
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 189
SmiMI CAYNNNNRTG 3 cut(s) 284, 343, 411
SnaBI TACGTA 1 cut(s) 370
SsiI CCGC 2 cut(s) 42, 354
TaaI ACNGT 3 cut(s) 308, 399, 440
TaiI ACGT 3 cut(s) 288, 347, 372
TaqI TCGA 1 cut(s) 251
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 357
TscAI CASTG 2 cut(s) 298, 404
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 188, 264
Tsp45I GTSAC 1 cut(s) 293
TspGWI ACGGA 2 cut(s) 246, 399
TspRI CASTG 2 cut(s) 298, 404
XceI RCATGY 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.