AT1G52190

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
19434480 .. 19439031
4552 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52190.1

Sequence Viewer

Length: 1824 bp
ATGGAGAACCCTCCCAATGAAACCGAGGCTAAGCAAATCCAAACCAATGAAGGCAAAAAAACAAAGGGTGGAATCATCACTATGCCTTTTATCATAGCTAACGAGGCGTTTGAGAAAGTGGCGAGTTATGGATTACTACCAAACATGATTATGTACTTAATCAGAGATTATAGATTTGGAGTAGCAAAAGGAACAAATGTGCTTTTCATGTGGTCTGCTGCATCAAATTTCACTCCTCTCTTGGGTGCTTTTCTCTCTGATTCCTATCTTGGTCGCTTCCTCACCATCTCCATTGCTTCTCTCTCCAGTTTCTTGGGAATGGTGCTTTTATGGCTAACTGCAATGTTACCACAAGTGAAGCCATCGCCTTGCGATCCCACAGCAGCCGGAAGCCACTGTGGGTCTTCGACCGCATCTCAGCTGGCTCTTTTGTATTCCGCATTTGCCCTTATATCGATCGGGTCAGGCGGGATCAGACCATGTTCCTTAGCATTTGGAGCTGATCAACTAGACAACAAAGAGAACCCAAAAAATGAAAGAGTTCTCGAGAGTTTCTTTGGTTGGTACTACGCTTCCTCAGCTGTGGCGGTTCTCATCGCGTTCACGGGTATTGTATACATTCAGGAGCATCTCGGGTGGAAAATCGGGTTTGGAGTACCTGCGGTCCTCATGTTGATCGCTGCTTTGCTATTCATTCTTGCGTCTCCTCTCTATGTTACACGTGGTGTGACCAAGAGTCTCTTCACCGGTTTAGCTCAAGCGATTGTTGCAGCTTACAAGAAGAGGAAGCTAAGTCTACCAGATCATCATGACTCCTTTGATTGTTATTATCACATGAAAGATTCTGAAATCAAAGCTCCAAGTCAAAAGTTGAGGTTTTTGAATAAAGCTTGTTTAATAAGTAACCGTGAGGAGGAGATTGGGTCAGATGGGTTTGCTTTGAATCCATGGAGGCTATGTACAACAGACAAAGTAGAGGAGCTTAAGGCATTGATCAAAGTCATACCCATATGGTCCACAGGTATAATGATGTCCATAAACACTAGCCAAAGTTCGTTTCAGTTACTGCAAGCGACTTCCATGGACAGGCGTCTGAGCCGCCATGGTTCAAGCTTTCAAGTTCCAGCTGGATCATTCGGTATGTTCACAATCATAGCTCTAGCCCTATGGGTCATTCTATATGACCGTGCGGTTATCCCATTAGCTTCCAAGATCCGAGGCAGACCTTTTAGACTTAGCGTTAAGCTAAGAATGGGATTAGGATTATTCATGTCATTCTTAGCAATGGCAATTTCCGCAATGGTTGAAAGCTTCAGAAGGAAAAAAGCTATAAGCCAAGGATATGCAAACAATTCAAATGCTGTGGTAGACATCTCAGCAATGTGGCTTGTGCCACAATATGTTCTACATGGTTTAGCAGAGGCTCTTACCGCAATAGGACAGACTGAGTTTTTCTACACCGAGTTTCCTAAAAGTATGTCTAGCATCGCGGCTTCTCTCTTCGGTTTAGGAATGGCTGTGGCTAGTCTATTGGCAAGCGTGGTCCTCAATGCGGTCAATGAACTAACTTCTAGAAATGGTAAAGAGAGTTGGGTTTCAGACAACATTAACAAGGGTCACTACAACTATTACTATTGGGTACTCGCGATAATGAGCTTCATCAATGTGATCTACTACGTGATATGTAGCTGGTCGTATGGTCCTTTGGTCGACCAGGTAAGGAATGGTAGGGTTAATGGTGTGAGAGAGGAAGAGGAGTTGATTGACATTGTTGGCAAAGGATTCGAGAAGGAAGATCTAAGTCCAGTTGTTAAAACCAATTAA

Protein Analysis

607

Amino Acids

66.9

Weight (kDa)

8.97

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 42 - 512 9e-07 Major Facilitator Superfamily
PTR2 PF00854 93 - 532 6e-78 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 667
AccI GTMKAC 4 cut(s) 615, 796, 1368, 1710
AccII CGCG 3 cut(s) 599, 1490, 1646
AclWI GGATC 4 cut(s) 368, 479, 1138, 1207
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 1297
AcvI CACGTG 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 1090
AdeI CACNNNGTG 1 cut(s) 725
AfaI GTAC 5 cut(s) 155, 566, 657, 961, 1641
AfiI CCNNNNNNNGG 4 cut(s) 242, 913, 1086, 1552
AflII CTTAAG 1 cut(s) 983
AflIII ACRYGT 1 cut(s) 719
AgeI ACCGGT 1 cut(s) 746
AgsI TTSAA 6 cut(s) 883, 943, 1110, 1118, 1307, 1356
AhdI GACNNNNNGTC 1 cut(s) 735
AjnI CCWGG 1 cut(s) 1713
AjuI GAANNNNNNNTTGG 4 cut(s) 725, 757, 1041, 1073
Alw26I GTCTC 2 cut(s) 708, 743
AlwI GGATC 4 cut(s) 368, 479, 1138, 1207
AlwNI CAGNNNCTG 1 cut(s) 1066
Ama87I CYCGRG 2 cut(s) 545, 632
ApeKI GCWGC 4 cut(s) 218, 383, 680, 770
ApoI RAATTY 1 cut(s) 226
AsiGI ACCGGT 1 cut(s) 746
Asp700I GAANNNNTTC 1 cut(s) 540
AspS9I GGNCC 4 cut(s) 664, 1014, 1543, 1700
AsuHPI GGTGA 2 cut(s) 274, 736
AvaI CYCGRG 2 cut(s) 545, 632
AvaII GGWCC 4 cut(s) 664, 1014, 1543, 1700
BbrPI CACGTG 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 577
BbvI GCAGC 4 cut(s) 205, 395, 667, 782
BccI CCATC 3 cut(s) 293, 370, 923
BcgI CGANNNNNNTGC 2 cut(s) 1765, 1799
BciT130I CCWGG 1 cut(s) 1715
BclI TGATCA 2 cut(s) 502, 993
BcoDI GTCTC 2 cut(s) 708, 743
BfaI CTAG 6 cut(s) 509, 1044, 1160, 1482, 1524, 1572
BfrI CTTAAG 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 667
BglII AGATCT 1 cut(s) 1795
BisI GCNGC 6 cut(s) 219, 384, 681, 771, 1099, 1491
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 6 cut(s) 220, 385, 682, 772, 1100, 1492
Bme1390I CCNGG 1 cut(s) 1715
Bme18I GGWCC 4 cut(s) 664, 1014, 1543, 1700
BmeRI GACNNNNNGTC 1 cut(s) 735
BmeT110I CYCGRG 2 cut(s) 545, 632
BmgT120I GGNCC 4 cut(s) 664, 1014, 1543, 1700
BmrFI CCNGG 1 cut(s) 1715
BmsI GCATC 4 cut(s) 230, 422, 637, 1494
BoxI GACNNNNGTC 1 cut(s) 1089
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 289
Bpu10I CCTNAGC 2 cut(s) 487, 577
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 741
Bsa29I ATCGAT 1 cut(s) 455
BsaAI YACGTR 2 cut(s) 722, 1678
BsaBI GATNNNNATC 1 cut(s) 264
BsaHI GRCGYC 1 cut(s) 1090
BsaJI CCNNGG 6 cut(s) 24, 947, 1080, 1102, 1216, 1336
BsaWI WCCGGW 1 cut(s) 746
BsaXI ACNNNNNCTCC 4 cut(s) 908, 938, 943, 973
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 913, 1086, 1552
Bse118I RCCGGY 1 cut(s) 746
Bse1I ACTGG 2 cut(s) 306, 1805
Bse3DI GCAATG 5 cut(s) 291, 348, 1290, 1305, 1386
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 1 cut(s) 1715
BseCI ATCGAT 1 cut(s) 455
BseDI CCNNGG 6 cut(s) 24, 947, 1080, 1102, 1216, 1336
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 4 cut(s) 242, 913, 1086, 1552
BseMI GCAATG 5 cut(s) 291, 348, 1290, 1305, 1386
BseMII CTCAG 5 cut(s) 431, 591, 1085, 1389, 1437
BseNI ACTGG 2 cut(s) 306, 1805
BseRI GAGGAG 6 cut(s) 225, 696, 926, 929, 992, 1769
BseXI GCAGC 4 cut(s) 205, 395, 667, 782
Bsh1236I CGCG 3 cut(s) 599, 1490, 1646
Bsh1285I CGRYCG 2 cut(s) 411, 459
BshTI ACCGGT 1 cut(s) 746
BshVI ATCGAT 1 cut(s) 455
BsiEI CGRYCG 2 cut(s) 411, 459
BsiHKCI CYCGRG 2 cut(s) 545, 632
BsiSI CCGG 2 cut(s) 387, 747
BslI CCNNNNNNNGG 4 cut(s) 242, 913, 1086, 1552
BsmAI GTCTC 2 cut(s) 708, 743
BsmBI CGTCTC 1 cut(s) 708
BsoBI CYCGRG 2 cut(s) 545, 632
Bsp1407I TGTACA 1 cut(s) 959
Bsp1720I GCTNAGC 1 cut(s) 30
Bsp19I CCATGG 3 cut(s) 947, 1080, 1102
Bsp68I TCGCGA 1 cut(s) 1646
BspCNI CTCAG 5 cut(s) 430, 590, 1086, 1388, 1438
BspDI ATCGAT 1 cut(s) 455
BspFNI CGCG 3 cut(s) 599, 1490, 1646
BspHI TCATGA 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 4 cut(s) 368, 479, 1138, 1207
BspTI CTTAAG 1 cut(s) 983
BsrDI GCAATG 5 cut(s) 291, 348, 1290, 1305, 1386
BsrFI RCCGGY 1 cut(s) 746
BsrGI TGTACA 1 cut(s) 959
BsrI ACTGG 2 cut(s) 306, 1805
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 6 cut(s) 24, 947, 1080, 1102, 1216, 1336
BssNAI GTATAC 1 cut(s) 616
BssNI GRCGYC 1 cut(s) 1090
BssT1I CCWWGG 4 cut(s) 947, 1080, 1102, 1336
Bst1107I GTATAC 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 1715
Bst4CI ACNGT 3 cut(s) 398, 908, 1187
Bst6I CTCTTC 4 cut(s) 746, 776, 1505, 1746
BstACI GRCGYC 1 cut(s) 1090
BstAFI CTTAAG 1 cut(s) 983
BstAUI TGTACA 1 cut(s) 959
BstBAI YACGTR 2 cut(s) 722, 1678
BstC8I GCNNGC 3 cut(s) 423, 1071, 1537
BstDSI CCRYGG 3 cut(s) 947, 1080, 1102
BstFNI CGCG 3 cut(s) 599, 1490, 1646
BstMAI GTCTC 2 cut(s) 708, 743
BstMCI CGRYCG 2 cut(s) 411, 459
BstMWI GCNNNNNNNGC 7 cut(s) 104, 331, 497, 578, 767, 1295, 1430
BstNI CCWGG 1 cut(s) 1715
BstPAI GACNNNNGTC 1 cut(s) 1089
BstSCI CCNGG 1 cut(s) 1713
BstUI CGCG 3 cut(s) 599, 1490, 1646
BstV1I GCAGC 4 cut(s) 205, 395, 667, 782
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 1212, 1795
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 2 cut(s) 1212, 1795
BstZ17I GTATAC 1 cut(s) 616
Bsu15I ATCGAT 1 cut(s) 455
BsuTUI ATCGAT 1 cut(s) 455
BtgI CCRYGG 3 cut(s) 947, 1080, 1102
BtgZI GCGATG 3 cut(s) 348, 580, 1471
BtsIMutI CAGTG 1 cut(s) 394
BtuMI TCGCGA 1 cut(s) 1646
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 3 cut(s) 423, 1071, 1537
CaiI CAGNNNCTG 1 cut(s) 1066
CciI TCATGA 1 cut(s) 808
Cfr10I RCCGGY 1 cut(s) 746
Cfr13I GGNCC 4 cut(s) 664, 1014, 1543, 1700
ClaI ATCGAT 1 cut(s) 455
CseI GACGC 2 cut(s) 690, 1079
CsiI ACCWGGT 1 cut(s) 1713
Csp6I GTAC 5 cut(s) 154, 565, 656, 960, 1640
CspAI ACCGGT 1 cut(s) 746
CspCI CAANNNNNGTGG 2 cut(s) 1344, 1379
CviQI GTAC 5 cut(s) 154, 565, 656, 960, 1640
DraIII CACNNNGTG 1 cut(s) 725
DriI GACNNNNNGTC 1 cut(s) 735
Eam1104I CTCTTC 4 cut(s) 746, 776, 1505, 1746
Eam1105I GACNNNNNGTC 1 cut(s) 735
EarI CTCTTC 4 cut(s) 746, 776, 1505, 1746
Eco130I CCWWGG 4 cut(s) 947, 1080, 1102, 1336
Eco47I GGWCC 4 cut(s) 664, 1014, 1543, 1700
Eco57I CTGAAG 1 cut(s) 1297
Eco72I CACGTG 1 cut(s) 722
Eco88I CYCGRG 2 cut(s) 545, 632
EcoRII CCWGG 1 cut(s) 1713
EcoT14I CCWWGG 4 cut(s) 947, 1080, 1102, 1336
ErhI CCWWGG 4 cut(s) 947, 1080, 1102, 1336
Esp3I CGTCTC 1 cut(s) 708
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FauI CCCGC 1 cut(s) 461
FauNDI CATATG 1 cut(s) 1010
FbaI TGATCA 2 cut(s) 502, 993
FblI GTMKAC 4 cut(s) 615, 796, 1368, 1710
Fnu4HI GCNGC 6 cut(s) 219, 384, 681, 771, 1099, 1491
Fsp4HI GCNGC 6 cut(s) 219, 384, 681, 771, 1099, 1491
FspBI CTAG 6 cut(s) 509, 1044, 1160, 1482, 1524, 1572
GluI GCNGC 6 cut(s) 219, 384, 681, 771, 1099, 1491
GsuI CTGGAG 1 cut(s) 289
HapII CCGG 2 cut(s) 387, 747
HgaI GACGC 2 cut(s) 690, 1079
Hin1I GRCGYC 1 cut(s) 1090
HincII GTYRAC 1 cut(s) 1711
HindII GTYRAC 1 cut(s) 1711
HindIII AAGCTT 3 cut(s) 888, 1111, 1309
HinfI GANTC 7 cut(s) 72, 260, 736, 812, 842, 943, 1782
HpaII CCGG 2 cut(s) 387, 747
HphI GGTGA 2 cut(s) 274, 736
Hpy166II GTNNAC 7 cut(s) 603, 616, 797, 1017, 1146, 1369, 1711
Hpy188I TCNGA 9 cut(s) 164, 259, 476, 847, 928, 1095, 1217, 1316, 1600
Hpy188III TCNNGA 7 cut(s) 545, 547, 623, 809, 1572, 1645, 1786
Hpy8I GTNNAC 7 cut(s) 603, 616, 797, 1017, 1146, 1369, 1711
HpyAV CCTTC 3 cut(s) 44, 1311, 1783
HpyCH4III ACNGT 3 cut(s) 398, 908, 1187
HpyCH4IV ACGT 2 cut(s) 721, 1677
HpyCH4V TGCA 5 cut(s) 221, 341, 770, 1069, 1346
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 331, 497, 578, 767, 1295, 1430
HpySE526I ACGT 2 cut(s) 721, 1677
Hsp92I GRCGYC 1 cut(s) 1090
Ksp22I TGATCA 2 cut(s) 502, 993
LmnI GCTCC 4 cut(s) 497, 625, 862, 979
Lsp1109I GCAGC 4 cut(s) 205, 395, 667, 782
LweI GCATC 4 cut(s) 230, 422, 637, 1494
MabI ACCWGGT 1 cut(s) 1713
MaeI CTAG 6 cut(s) 509, 1044, 1160, 1482, 1524, 1572
MaeII ACGT 2 cut(s) 721, 1677
MaeIII GTNAC 6 cut(s) 345, 715, 727, 902, 1062, 1616
MboII GAAGA 6 cut(s) 396, 733, 793, 1492, 1763, 1805
MflI RGATCY 2 cut(s) 1212, 1795
MluCI AATT 4 cut(s) 226, 1290, 1351, 1819
MlyI GAGTC 2 cut(s) 745, 806
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 8 cut(s) 158, 896, 984, 1242, 1608, 1734, 1812, 1822
MslI CAYNNNNRTG 3 cut(s) 80, 149, 1664
MspA1I CMGCKG 3 cut(s) 421, 581, 1127
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 2 cut(s) 387, 747
MspR9I CCNGG 1 cut(s) 1715
MvaI CCWGG 1 cut(s) 1715
MvnI CGCG 3 cut(s) 599, 1490, 1646
MwoI GCNNNNNNNGC 7 cut(s) 104, 331, 497, 578, 767, 1295, 1430
NcoI CCATGG 3 cut(s) 947, 1080, 1102
NdeI CATATG 1 cut(s) 1010
NmuCI GTSAC 2 cut(s) 727, 1616
NruI TCGCGA 1 cut(s) 1646
PaeR7I CTCGAG 1 cut(s) 545
PagI TCATGA 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 5 cut(s) 72, 260, 842, 943, 1782
PinAI ACCGGT 1 cut(s) 746
PkrI GCNGC 6 cut(s) 220, 385, 682, 772, 1100, 1492
Ple19I CGATCG 1 cut(s) 459
PleI GAGTC 2 cut(s) 744, 806
PmaCI CACGTG 1 cut(s) 722
PmlI CACGTG 1 cut(s) 722
PpsI GAGTC 2 cut(s) 744, 806
Ppu21I YACGTR 2 cut(s) 722, 1678
PshAI GACNNNNGTC 1 cut(s) 1089
Psp6I CCWGG 1 cut(s) 1713
PspCI CACGTG 1 cut(s) 722
PspGI CCWGG 1 cut(s) 1713
PspPI GGNCC 4 cut(s) 664, 1014, 1543, 1700
PstNI CAGNNNCTG 1 cut(s) 1066
PsuI RGATCY 2 cut(s) 1212, 1795
PvuI CGATCG 1 cut(s) 459
PvuII CAGCTG 3 cut(s) 421, 581, 1127
RruI TCGCGA 1 cut(s) 1646
RsaI GTAC 5 cut(s) 155, 566, 657, 961, 1641
RsaNI GTAC 5 cut(s) 154, 565, 656, 960, 1640
RseI CAYNNNNRTG 3 cut(s) 80, 149, 1664
SalI GTCGAC 1 cut(s) 1709
SaqAI TTAA 8 cut(s) 158, 896, 984, 1242, 1608, 1734, 1812, 1822
SatI GCNGC 6 cut(s) 219, 384, 681, 771, 1099, 1491
Sau96I GGNCC 4 cut(s) 664, 1014, 1543, 1700
SchI GAGTC 2 cut(s) 745, 806
ScrFI CCNGG 1 cut(s) 1715
SexAI ACCWGGT 1 cut(s) 1713
SfaNI GCATC 4 cut(s) 230, 422, 637, 1494
Sfr274I CTCGAG 1 cut(s) 545
SinI GGWCC 4 cut(s) 664, 1014, 1543, 1700
SlaI CTCGAG 1 cut(s) 545
SmiMI CAYNNNNRTG 3 cut(s) 80, 149, 1664
SmlI CTYRAG 3 cut(s) 545, 756, 983
SmoI CTYRAG 3 cut(s) 545, 756, 983
Sse9I AATT 4 cut(s) 226, 1290, 1351, 1819
SspMI CTAG 6 cut(s) 509, 1044, 1160, 1482, 1524, 1572
StyD4I CCNGG 1 cut(s) 1713
StyI CCWWGG 4 cut(s) 947, 1080, 1102, 1336
TaaI ACNGT 3 cut(s) 398, 908, 1187
TaiI ACGT 2 cut(s) 724, 1680
TaqI TCGA 5 cut(s) 407, 455, 546, 1710, 1785
TasI AATT 4 cut(s) 226, 1290, 1351, 1819
TatI WGTACW 2 cut(s) 153, 959
TauI GCSGC 2 cut(s) 1101, 1493
TfiI GAWTC 5 cut(s) 72, 260, 842, 943, 1782
Tru1I TTAA 8 cut(s) 158, 896, 984, 1242, 1608, 1734, 1812, 1822
Tru9I TTAA 8 cut(s) 158, 896, 984, 1242, 1608, 1734, 1812, 1822
TscAI CASTG 1 cut(s) 401
TseFI GTSAC 2 cut(s) 727, 1616
TseI GCWGC 4 cut(s) 218, 383, 680, 770
Tsp45I GTSAC 2 cut(s) 727, 1616
TspDTI ATGAA 9 cut(s) 33, 63, 196, 549, 682, 851, 1258, 1575, 1648
TspRI CASTG 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 4 cut(s) 664, 1014, 1543, 1700
XapI RAATTY 1 cut(s) 226
XbaI TCTAGA 1 cut(s) 1571
XcmI CCANNNNNNNNNTGG 1 cut(s) 1721
XhoI CTCGAG 1 cut(s) 545
XmiI GTMKAC 4 cut(s) 615, 796, 1368, 1710
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 6 cut(s) 509, 1044, 1160, 1482, 1524, 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.