RLG00000018674

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
33737585 .. 33739951
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018674

Sequence Viewer

Length: 1782 bp
ATGGTTGCAAAGGACATTATGGAGCAAACCAAAGCCACGAAATCAGTTACAAGCAAGAAGCTGGGTGGCCTTAGAACCATGCCTTTTATAATAACAAATGAGGCACTTGAAAAGGTTGCAACCTATGGTCTTCAGGCAAATATGATCTTGTACTTGATCTATGAATATCACTTGGAGGTAGCCACTGGAGCAAGCATTCTGTTCTTGTGGACATCCCTATCGTACTTAACGCCTATCTTGGGGGCTTTTCTCTCTGATTCTTGGTTGGGTCGGTTTTGTGTGATCACTTTGGGAACATTCATTAGCTTACTCGGAATTGTTATTTTATGGTTTACAGCAATATTCCCAAAAGCAAGGCCAGTCCATTGTGATCTGCCATCTGGAGAAAAATGTGTTTCACCAAAGCCAGCTCAACTCTTGCTTCTGTTGTCCTCATTTGTTCTCATGTCCATCGGATCTGGTGGTATCAAACCTTGTTCAATGGCCTTTGGTGCAGACCAAATGGAAAATCCTGAAAACCCAAAGAATGCAAGCATCATGCAGAGGTTCTTCAATTGGTACTATGCATCAGTTGGACTCTCAGTCATGATTGCAGTGACAGTAATGGTTTACATTCAAGACTCGGCTGGTTGGGTTGTGGGTTTTGGAGTTTGTGCAGGAGTCATGTTGCTGTCAACTATCTTCTTTTTGCTTGGCTCTTCTGTTTATGTCAAAGTGCCTGCAAACAAGAAATTGTCTGCTGGATTTCTGCATGTGATTGCTGCAGCTTGGAAAAATAGATGCTTGGATTTGCCACCAGAGAATTTTGATGGATGGTATAGTCTCAAAGGTTCAAAGCTTGTCACCCCAACCCACAAACAAAGGTATCTAAACAAAGCTTGCATGATTACAAGTGCTGAGAAGGATTTAAGCCCTGATGGGTTGGCCATAGATCCATGGAGTTTGTGCACCGTTAGACAAGTAGAGGAGCTGAAGGTCCTTATCAACGTCCTGCCCATTTGGTCCACCGGCATCATGATTGGGGTGGTCATGAACCAATACTCATTTCCTGTCGTCCAAGCAAGCACCATGGAGAGGCATATCTTCCCCCACATCAAACTTCCAGCAGCCTCCTTCTCCATCTTTGTAATTCTCACTCTCACAATTTGGGTGGTAGTTTACGACTGGCTTCTAGTTCCATTGATATCAAAGTACACAAAGAGGCCGCGTGGATTGACCCGCAAGCAACGAATAGGTGCAGGGCTAGTACTCTCTTGCTTGGCTACTGCAGTGGCAGCAGAGGTTGAGAGGCATAGAAGAAGCACTGCAATAAAAGAAGGATTTGCAGACAATGCGCACGGAGTAGTGACTATGTCTGCAAGGTGGTTAGTGCCACAGTACTGCTTGAGTGGACTAGCCGAGGCGTTCAATGCCATAGGGCAAATAGAGTTCTTCTACTCTCAGCTCCCAAAGAGCATGGCTAGTATTGCTGTATCTCTTTTTACACTTGGGTTTGGAATAGGAAGTTTGCTTGCGAGTCTCATAGTGACTGTTGTGAACGATGTGACCAAGAAATGGGGAGTGAGTTGGGTTTCAAGTAACCTCAACCAAGGTCACTATGACTACTACTATTTGGTTCTTACTGTCATGAGCGTGGTTAATTTCTTGTATTATTTACTGTGTAGTTGGGCATATGGCTCCTGCGAGGATAAAACGATTTGGGATGAGGATAATGATGATCATGACAAGAAAGAGGAAGAGATGAAGTCAGAAGAGTGTGTAGTTGTTGTAACTGCTGCTTGA

Protein Analysis

594

Amino Acids

65.65

Weight (kDa)

8.28

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 46 - 505 3.4e-08 Major Facilitator Superfamily
PTR2 PF00854 93 - 518 5.4e-75 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
Acc16I TGCGCA 1 cut(s) 1335
AccB7I CCANNNNNTGG 1 cut(s) 1554
AccII CGCG 1 cut(s) 1207
AciI CCGC 2 cut(s) 1205, 1219
AclWI GGATC 2 cut(s) 463, 926
AcoI YGGCCR 1 cut(s) 924
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 2 cut(s) 116, 992
AfaI GTAC 6 cut(s) 152, 224, 560, 1193, 1248, 1379
AfiI CCNNNNNNNGG 3 cut(s) 239, 1074, 1554
AgsI TTSAA 7 cut(s) 110, 480, 553, 617, 834, 1408, 1575
AhdI GACNNNNNGTC 1 cut(s) 581
AjuI GAANNNNNNNTTGG 2 cut(s) 1029, 1061
AluBI AGCT 8 cut(s) 61, 306, 410, 767, 838, 878, 970, 1444
AluI AGCT 8 cut(s) 61, 306, 410, 767, 838, 878, 970, 1444
Alw21I GWGCWC 1 cut(s) 950
Alw26I GTCTC 2 cut(s) 827, 1523
Alw44I GTGCAC 1 cut(s) 946
AlwI GGATC 2 cut(s) 463, 926
AoxI GGCC 5 cut(s) 67, 356, 483, 924, 1202
ApaLI GTGCAC 1 cut(s) 946
ApeKI GCWGC 5 cut(s) 761, 764, 1106, 1274, 1775
ApoI RAATTY 1 cut(s) 802
AspLEI GCGC 1 cut(s) 1336
AspS9I GGNCC 2 cut(s) 976, 1002
AsuHPI GGTGA 2 cut(s) 390, 835
AvaII GGWCC 2 cut(s) 976, 1002
BaeGI GKGCMC 1 cut(s) 950
BaeI ACNNNNGTAYC 2 cut(s) 848, 881
BalI TGGCCA 1 cut(s) 926
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 950
BbvI GCAGC 5 cut(s) 748, 776, 1118, 1286, 1762
BccI CCATC 6 cut(s) 385, 458, 803, 807, 911, 1127
BclI TGATCA 2 cut(s) 282, 1717
BcoDI GTCTC 2 cut(s) 827, 1523
BfaI CTAG 4 cut(s) 1172, 1244, 1394, 1461
BfmI CTRYAG 2 cut(s) 762, 1266
BisI GCNGC 6 cut(s) 762, 765, 1107, 1205, 1275, 1776
BlsI GCNGC 6 cut(s) 763, 766, 1108, 1206, 1276, 1777
BmcAI AGTACT 2 cut(s) 1248, 1379
Bme18I GGWCC 2 cut(s) 976, 1002
BmeRI GACNNNNNGTC 1 cut(s) 581
BmgT120I GGNCC 2 cut(s) 976, 1002
BmiI GGNNCC 1 cut(s) 1678
BmsI GCATC 4 cut(s) 543, 575, 770, 1020
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 2 cut(s) 207, 402
BpuEI CTTGAG 1 cut(s) 1405
BsaJI CCNNGG 4 cut(s) 935, 1068, 1398, 1588
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 1074, 1554
Bse118I RCCGGY 1 cut(s) 1007
Bse1I ACTGG 3 cut(s) 190, 359, 1169
BseDI CCNNGG 4 cut(s) 935, 1068, 1398, 1588
BseGI GGATG 3 cut(s) 212, 818, 1708
BseLI CCNNNNNNNGG 3 cut(s) 239, 1074, 1554
BseMII CTCAG 3 cut(s) 594, 888, 1454
BseNI ACTGG 3 cut(s) 190, 359, 1169
BseRI GAGGAG 1 cut(s) 980
BseSI GKGCMC 1 cut(s) 950
BseXI GCAGC 5 cut(s) 748, 776, 1118, 1286, 1762
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 3 cut(s) 513, 675, 1257
Bsh1236I CGCG 1 cut(s) 1207
BshFI GGCC 5 cut(s) 69, 358, 485, 926, 1204
BsiHKAI GWGCWC 1 cut(s) 950
BsiSI CCGG 1 cut(s) 1008
BslI CCNNNNNNNGG 3 cut(s) 239, 1074, 1554
BsmAI GTCTC 2 cut(s) 827, 1523
BsmI GAATGC 2 cut(s) 195, 532
BsnI GGCC 5 cut(s) 69, 358, 485, 926, 1204
Bsp1286I GDGCHC 1 cut(s) 950
Bsp143I GATC 7 cut(s) 144, 156, 282, 370, 455, 931, 1717
Bsp19I CCATGG 2 cut(s) 935, 1068
BspACI CCGC 2 cut(s) 1205, 1219
BspANI GGCC 5 cut(s) 69, 358, 485, 926, 1204
BspCNI CTCAG 3 cut(s) 593, 889, 1453
BspFNI CGCG 1 cut(s) 1207
BspHI TCATGA 5 cut(s) 585, 1014, 1029, 1626, 1720
BspLI GGNNCC 1 cut(s) 1678
BspMAI CTGCAG 2 cut(s) 766, 1270
BspPI GGATC 2 cut(s) 463, 926
BspQI GCTCTTC 1 cut(s) 703
BsrFI RCCGGY 1 cut(s) 1007
BsrI ACTGG 3 cut(s) 190, 359, 1169
BssAI RCCGGY 1 cut(s) 1007
BssECI CCNNGG 4 cut(s) 935, 1068, 1398, 1588
BssMI GATC 7 cut(s) 144, 156, 282, 370, 455, 931, 1717
BssT1I CCWWGG 3 cut(s) 935, 1068, 1588
Bst4CI ACNGT 6 cut(s) 601, 952, 1377, 1531, 1624, 1659
Bst6I CTCTTC 3 cut(s) 703, 1731, 1746
BstAPI GCANNNNNTGC 1 cut(s) 1331
BstC8I GCNNGC 8 cut(s) 193, 408, 532, 720, 880, 1063, 1223, 1512
BstDEI CTNAG 4 cut(s) 71, 580, 897, 1440
BstDSI CCRYGG 2 cut(s) 935, 1068
BstF5I GGATG 3 cut(s) 212, 818, 1708
BstFNI CGCG 1 cut(s) 1207
BstHHI GCGC 1 cut(s) 1336
BstKTI GATC 7 cut(s) 147, 159, 285, 373, 458, 934, 1720
BstMAI GTCTC 2 cut(s) 827, 1523
BstMBI GATC 7 cut(s) 144, 156, 282, 370, 455, 931, 1717
BstMWI GCNNNNNNNGC 6 cut(s) 188, 491, 1274, 1331, 1409, 1466
BstNSI RCATGY 1 cut(s) 755
BstSFI CTRYAG 2 cut(s) 762, 1266
BstSLI GKGCMC 1 cut(s) 950
BstUI CGCG 1 cut(s) 1207
BstV1I GCAGC 5 cut(s) 748, 776, 1118, 1286, 1762
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 455, 931
BstYI RGATCY 2 cut(s) 455, 931
BsuRI GGCC 5 cut(s) 69, 358, 485, 926, 1204
BtgI CCRYGG 2 cut(s) 935, 1068
BtsCI GGATG 3 cut(s) 212, 818, 1708
BtsI GCAGTG 3 cut(s) 600, 1275, 1302
BtsIMutI CAGTG 4 cut(s) 183, 600, 1275, 1302
Cac8I GCNNGC 8 cut(s) 193, 408, 532, 720, 880, 1063, 1223, 1512
CciI TCATGA 5 cut(s) 585, 1014, 1029, 1626, 1720
CfoI GCGC 1 cut(s) 1336
Cfr10I RCCGGY 1 cut(s) 1007
Cfr13I GGNCC 2 cut(s) 976, 1002
Csp6I GTAC 6 cut(s) 151, 223, 559, 1192, 1247, 1378
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CviQI GTAC 6 cut(s) 151, 223, 559, 1192, 1247, 1378
DdeI CTNAG 4 cut(s) 71, 580, 897, 1440
DpnI GATC 7 cut(s) 146, 158, 284, 372, 457, 933, 1719
DpnII GATC 7 cut(s) 144, 156, 282, 370, 455, 931, 1717
DriI GACNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 924
Eam1104I CTCTTC 3 cut(s) 703, 1731, 1746
Eam1105I GACNNNNNGTC 1 cut(s) 581
EarI CTCTTC 3 cut(s) 703, 1731, 1746
Eco130I CCWWGG 3 cut(s) 935, 1068, 1588
Eco32I GATATC 1 cut(s) 1185
Eco47I GGWCC 2 cut(s) 976, 1002
Eco57I CTGAAG 2 cut(s) 116, 992
EcoO109I RGGNCCY 1 cut(s) 976
EcoRV GATATC 1 cut(s) 1185
EcoT14I CCWWGG 3 cut(s) 935, 1068, 1588
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 3 cut(s) 935, 1068, 1588
FauI CCCGC 1 cut(s) 1226
FauNDI CATATG 1 cut(s) 1672
FbaI TGATCA 2 cut(s) 282, 1717
Fnu4HI GCNGC 6 cut(s) 762, 765, 1107, 1205, 1275, 1776
FokI GGATG 3 cut(s) 199, 825, 1715
Fsp4HI GCNGC 6 cut(s) 762, 765, 1107, 1205, 1275, 1776
FspAI RTGCGCAY 1 cut(s) 1335
FspBI CTAG 4 cut(s) 1172, 1244, 1394, 1461
FspI TGCGCA 1 cut(s) 1335
GlaI GCGC 1 cut(s) 1335
GluI GCNGC 6 cut(s) 762, 765, 1107, 1205, 1275, 1776
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 2 cut(s) 207, 402
HaeIII GGCC 5 cut(s) 69, 358, 485, 926, 1204
HapII CCGG 1 cut(s) 1008
HhaI GCGC 1 cut(s) 1336
Hin6I GCGC 1 cut(s) 1334
HinP1I GCGC 1 cut(s) 1334
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HindIII AAGCTT 2 cut(s) 836, 876
HinfI GANTC 5 cut(s) 257, 576, 620, 660, 1516
HpaII CCGG 1 cut(s) 1008
HphI GGTGA 2 cut(s) 390, 835
Hpy188I TCNGA 4 cut(s) 256, 314, 455, 1750
Hpy188III TCNNGA 8 cut(s) 381, 512, 586, 617, 1015, 1030, 1627, 1721
HpyAV CCTTC 4 cut(s) 895, 967, 1123, 1310
HpyCH4III ACNGT 6 cut(s) 601, 952, 1377, 1531, 1624, 1659
HpyCH4IV ACGT 1 cut(s) 987
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 491, 1274, 1331, 1409, 1466
HpyF3I CTNAG 4 cut(s) 71, 580, 897, 1440
HpySE526I ACGT 1 cut(s) 987
HspAI GCGC 1 cut(s) 1334
Ksp22I TGATCA 2 cut(s) 282, 1717
Kzo9I GATC 7 cut(s) 144, 156, 282, 370, 455, 931, 1717
LguI GCTCTTC 1 cut(s) 703
LmnI GCTCC 5 cut(s) 22, 188, 967, 1449, 1682
Lsp1109I GCAGC 5 cut(s) 748, 776, 1118, 1286, 1762
LweI GCATC 4 cut(s) 543, 575, 770, 1020
MaeI CTAG 4 cut(s) 1172, 1244, 1394, 1461
MaeII ACGT 1 cut(s) 987
MaeIII GTNAC 9 cut(s) 46, 595, 841, 1345, 1525, 1543, 1577, 1592, 1768
MalI GATC 7 cut(s) 146, 158, 284, 372, 457, 933, 1719
MboI GATC 7 cut(s) 144, 156, 282, 370, 455, 931, 1717
MboII GAAGA 9 cut(s) 122, 541, 673, 690, 1075, 1308, 1423, 1748, 1763
MfeI CAATTG 1 cut(s) 553
MflI RGATCY 2 cut(s) 455, 931
MhlI GDGCHC 1 cut(s) 950
MlsI TGGCCA 1 cut(s) 926
MluCI AATT 7 cut(s) 315, 553, 731, 802, 1128, 1143, 1639
MluNI TGGCCA 1 cut(s) 926
MlyI GAGTC 4 cut(s) 570, 614, 669, 1525
MmeI TCCRAC 1 cut(s) 553
Mox20I TGGCCA 1 cut(s) 926
Mph1103I ATGCAT 1 cut(s) 568
MscI TGGCCA 1 cut(s) 926
MseI TTAA 3 cut(s) 227, 908, 1638
MslI CAYNNNNRTG 1 cut(s) 1631
Msp20I TGGCCA 1 cut(s) 926
MspI CCGG 1 cut(s) 1008
MunI CAATTG 1 cut(s) 553
Mva1269I GAATGC 2 cut(s) 195, 532
MvnI CGCG 1 cut(s) 1207
MwoI GCNNNNNNNGC 6 cut(s) 188, 491, 1274, 1331, 1409, 1466
NcoI CCATGG 2 cut(s) 935, 1068
NdeI CATATG 1 cut(s) 1672
NdeII GATC 7 cut(s) 144, 156, 282, 370, 455, 931, 1717
NlaIV GGNNCC 1 cut(s) 1678
NmeAIII GCCGAG 2 cut(s) 602, 1423
NmuCI GTSAC 6 cut(s) 595, 841, 1345, 1525, 1543, 1592
NsbI TGCGCA 1 cut(s) 1335
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 1 cut(s) 755
PagI TCATGA 5 cut(s) 585, 1014, 1029, 1626, 1720
PciSI GCTCTTC 1 cut(s) 703
PctI GAATGC 2 cut(s) 195, 532
PfeI GAWTC 1 cut(s) 257
PflFI GACNNNGTC 1 cut(s) 1351
PflMI CCANNNNNTGG 1 cut(s) 1554
PkrI GCNGC 6 cut(s) 763, 766, 1108, 1206, 1276, 1777
PleI GAGTC 4 cut(s) 570, 614, 668, 1524
PpsI GAGTC 4 cut(s) 570, 614, 668, 1524
PpuMI RGGWCCY 1 cut(s) 976
PsiI TTATAA 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 976
PspFI CCCAGC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 1678
PspPI GGNCC 2 cut(s) 976, 1002
PspPPI RGGWCCY 1 cut(s) 976
PstI CTGCAG 2 cut(s) 766, 1270
PsuI RGATCY 2 cut(s) 455, 931
PsyI GACNNNGTC 1 cut(s) 1351
RsaI GTAC 6 cut(s) 152, 224, 560, 1193, 1248, 1379
RsaNI GTAC 6 cut(s) 151, 223, 559, 1192, 1247, 1378
RseI CAYNNNNRTG 1 cut(s) 1631
SapI GCTCTTC 1 cut(s) 703
SaqAI TTAA 3 cut(s) 227, 908, 1638
SatI GCNGC 6 cut(s) 762, 765, 1107, 1205, 1275, 1776
Sau3AI GATC 7 cut(s) 144, 156, 282, 370, 455, 931, 1717
Sau96I GGNCC 2 cut(s) 976, 1002
ScaI AGTACT 2 cut(s) 1248, 1379
SchI GAGTC 4 cut(s) 570, 614, 669, 1525
SduI GDGCHC 1 cut(s) 950
SfaNI GCATC 4 cut(s) 543, 575, 770, 1020
SfcI CTRYAG 2 cut(s) 762, 1266
SinI GGWCC 2 cut(s) 976, 1002
SmiMI CAYNNNNRTG 1 cut(s) 1631
SmlI CTYRAG 1 cut(s) 1384
SmoI CTYRAG 1 cut(s) 1384
Sse9I AATT 7 cut(s) 315, 553, 731, 802, 1128, 1143, 1639
SsiI CCGC 2 cut(s) 1205, 1219
SspI AATATT 1 cut(s) 342
SspMI CTAG 4 cut(s) 1172, 1244, 1394, 1461
StyI CCWWGG 3 cut(s) 935, 1068, 1588
TaaI ACNGT 6 cut(s) 601, 952, 1377, 1531, 1624, 1659
TaiI ACGT 1 cut(s) 990
TasI AATT 7 cut(s) 315, 553, 731, 802, 1128, 1143, 1639
TatI WGTACW 4 cut(s) 150, 1191, 1246, 1377
TauI GCSGC 1 cut(s) 1207
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 227, 908, 1638
Tru9I TTAA 3 cut(s) 227, 908, 1638
TscAI CASTG 4 cut(s) 190, 600, 1275, 1309
TseFI GTSAC 6 cut(s) 595, 841, 1345, 1525, 1543, 1592
TseI GCWGC 5 cut(s) 761, 764, 1106, 1274, 1775
Tsp45I GTSAC 6 cut(s) 595, 841, 1345, 1525, 1543, 1592
TspDTI ATGAA 4 cut(s) 177, 289, 1046, 1757
TspGWI ACGGA 1 cut(s) 1353
TspRI CASTG 4 cut(s) 190, 600, 1275, 1309
Tth111I GACNNNGTC 1 cut(s) 1351
Van91I CCANNNNNTGG 1 cut(s) 1554
VneI GTGCAC 1 cut(s) 946
VpaK11BI GGWCC 2 cut(s) 976, 1002
XapI RAATTY 1 cut(s) 802
XceI RCATGY 1 cut(s) 755
XspI CTAG 4 cut(s) 1172, 1244, 1394, 1461
ZrmI AGTACT 2 cut(s) 1248, 1379
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.