Rmu_sc0002270.1_g000013

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002270.1
Physical Location & Seq
Reverse (-)
42840 .. 45247
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002270.1_g000013.1.cds

Sequence Viewer

Length: 1782 bp
atggttgcacaggaaatgatggatatttcttcagagaaagccaaacccactgaagaagttacaggcaagaagctgggtggccttagaaccatgcccttcatcatatcaaatgagacatttgaaaaggttgcaagctatggtcttcatgcaaatatgatcttgtacttgatgaatgaatatcacttggggttagccaccggaacatgtatcctgttcttgtggacagctgcatcgaactttacgccaatcatgggggcttttctctccgattcttacttgggccggtttcgcgtgatcgctctaggatcagtaggaatggtggtgttatggtttacagcaatttttccacatgcaaggccactccattgtgatccgaaatctggagataaatgcgttccagcaagctcagctcaactcatgctactcttttcagcatttgctctcatgtcaattggatccggcggcatcaaaccatgttcattggcctttggtgcagatcaattgcacaaacccgaaaacccgaagaatgcaaggatcctgcagagcttcttcaactggtattatgcttcagttggaatctcagttatgattgcagtgacagtcatagtttacattcaagtctcagctggttgggttgtgggttttggagtcccagcaggactcatgttggtgtctactattctctttttgtttggatccttcctttatgttaaagtgcctgcaaacaagaacctatctgctggatttgtgcgagtgattgctgctgcttggaaaaacagacaatttgatttgccaaccaagaattttgatggatggtatagtcttaaaggttcaaagcttgttaccccaaccaataaacaaaggtatctaaacaaagcttgcatgattagaagtcgtgaaaaggacttgggccctgatggattagccatagataaatggagtttgtgcacagttagacaagtagaagagctgaaggtactgatcagtgtcctgcccatctggtcatccagcatcatgattgcggtgatcatcacccaacactcaattcctgtagcacaagcaaccaccatggacaggtacatcttcccccattttcaaatgccagcagcctccttctccctctttggaattcttactctcacaatttgggtggcattatatgaccgggttctagtcccgttgatatcaaagtacacgaagaggcctcgtggattgagcttcaagcaacgaattggtacagggctagctatctcctgcttggcaatggctgtggcatcagaggtggagaggcgtagaagaaacacagcaatccaagaagggtttgcaaataacaagcacggtgtaaccaccatgtctgctaagtggttagtgccacaacattgcctgattggcctttctgaggctttcaatgccattgggcagatagagttctactactctcagttcccaaagagcatgtctagtattgctgtggctcttttgtcacttggttttggaatgggaagtttggttgggagtctcattgtgactgttatgaacaatgtgaccaagaaaaggggagtgagttgggtttcaagtaacctcaaccagggtcactacgattactactatttggtaattactatcttgagtttggtcaatttcttgtattatttactgtgtagtagggcgtatgggtgttgtgaggataaaaagatctgggatgaagttaatgatgatgaagacatgaaagaggaagagatggccaagtctgcagagcactctgtggtcttctctgcttga

Protein Analysis

593

Amino Acids

65.68

Weight (kDa)

9.14

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 674
AccII CGCG 1 cut(s) 291
AciI CCGC 2 cut(s) 462, 1022
AclWI GGATC 8 cut(s) 313, 365, 450, 463, 529, 542, 690, 703
AcoI YGGCCR 1 cut(s) 1743
AcsI RAATTY 2 cut(s) 802, 1128
AcuI CTGAAG 4 cut(s) 15, 72, 552, 992
AdeI CACNNNGTG 1 cut(s) 1765
AfaI GTAC 5 cut(s) 164, 978, 1079, 1193, 1237
AfiI CCNNNNNNNGG 6 cut(s) 251, 380, 1074, 1399, 1554, 1588
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 8 cut(s) 122, 553, 617, 834, 1097, 1222, 1408, 1575
AjnI CCWGG 1 cut(s) 1587
AjuI GAANNNNNNNTTGG 2 cut(s) 1029, 1061
Alw21I GWGCWC 2 cut(s) 950, 1761
Alw26I GTCTC 3 cut(s) 107, 625, 1523
Alw44I GTGCAC 1 cut(s) 946
AlwI GGATC 8 cut(s) 313, 365, 450, 463, 529, 542, 690, 703
AoxI GGCC 8 cut(s) 79, 280, 356, 483, 910, 1202, 1390, 1743
ApaI GGGCCC 1 cut(s) 914
ApaLI GTGCAC 1 cut(s) 946
ApeKI GCWGC 4 cut(s) 227, 761, 764, 1106
ApoI RAATTY 2 cut(s) 802, 1128
ArsI GACNNNNNNTTYG 2 cut(s) 1442, 1474
AspS9I GGNCC 3 cut(s) 280, 910, 911
AsuC2I CCSGG 1 cut(s) 1166
AsuHPI GGTGA 2 cut(s) 1024, 1036
AsuNHI GCTAGC 1 cut(s) 1243
BaeGI GKGCMC 2 cut(s) 914, 950
BaeI ACNNNNGTAYC 2 cut(s) 848, 881
BalI TGGCCA 1 cut(s) 1745
BamHI GGATCC 3 cut(s) 455, 534, 695
BanII GRGCYC 1 cut(s) 914
BauI CACGAG 1 cut(s) 1206
BbsI GAAGAC 3 cut(s) 134, 1728, 1762
Bbv12I GWGCWC 2 cut(s) 950, 1761
BbvI GCAGC 4 cut(s) 214, 748, 751, 1118
BccI CCATC 6 cut(s) 13, 803, 807, 911, 1004, 1735
BciT130I CCWGG 1 cut(s) 1589
BciVI GTATCC 1 cut(s) 218
BclI TGATCA 2 cut(s) 981, 1026
BcnI CCSGG 1 cut(s) 1166
BcoDI GTCTC 3 cut(s) 107, 625, 1523
BfaI CTAG 4 cut(s) 302, 1172, 1244, 1461
BfmI CTRYAG 3 cut(s) 539, 1050, 1752
BfuI GTATCC 1 cut(s) 218
BglI GCCNNNNNGGC 1 cut(s) 1389
BglII AGATCT 1 cut(s) 1695
BisI GCNGC 5 cut(s) 228, 463, 762, 765, 1107
BlpI GCTNAGC 1 cut(s) 406
BlsI GCNGC 5 cut(s) 229, 464, 763, 766, 1108
Bme1390I CCNGG 2 cut(s) 1166, 1589
BmgT120I GGNCC 3 cut(s) 280, 910, 911
BmiI GGNNCC 4 cut(s) 457, 536, 697, 912
BmrFI CCNGG 2 cut(s) 1166, 1589
BmsI GCATC 4 cut(s) 239, 474, 1020, 1283
BmtI GCTAGC 1 cut(s) 1247
BpiI GAAGAC 3 cut(s) 134, 1728, 1762
BpmI CTGGAG 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 1648
BpuMI CCSGG 1 cut(s) 1166
BsaJI CCNNGG 2 cut(s) 1068, 1588
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 6 cut(s) 251, 380, 1074, 1399, 1554, 1588
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 2 cut(s) 1269, 1378
BseBI CCWGG 1 cut(s) 1589
BseDI CCNNGG 2 cut(s) 1068, 1588
BseGI GGATG 3 cut(s) 818, 1004, 1708
BseLI CCNNNNNNNGG 6 cut(s) 251, 380, 1074, 1399, 1554, 1588
BseMI GCAATG 2 cut(s) 1269, 1378
BseMII CTCAG 5 cut(s) 420, 594, 636, 1389, 1454
BseNI ACTGG 1 cut(s) 560
BseSI GKGCMC 2 cut(s) 914, 950
BseXI GCAGC 4 cut(s) 214, 748, 751, 1118
BseYI CCCAGC 2 cut(s) 73, 652
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 8 cut(s) 81, 282, 358, 485, 912, 1204, 1392, 1745
BsiHKAI GWGCWC 2 cut(s) 950, 1761
BsiSI CCGG 4 cut(s) 198, 283, 459, 1165
BslFI GGGAC 2 cut(s) 635, 1160
BslI CCNNNNNNNGG 6 cut(s) 251, 380, 1074, 1399, 1554, 1588
BsmAI GTCTC 3 cut(s) 107, 625, 1523
BsmFI GGGAC 2 cut(s) 635, 1160
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 8 cut(s) 81, 282, 358, 485, 912, 1204, 1392, 1745
Bsp120I GGGCCC 1 cut(s) 910
Bsp1286I GDGCHC 3 cut(s) 914, 950, 1761
Bsp1720I GCTNAGC 1 cut(s) 406
Bsp19I CCATGG 1 cut(s) 1068
BspACI CCGC 2 cut(s) 462, 1022
BspANI GGCC 8 cut(s) 81, 282, 358, 485, 912, 1204, 1392, 1745
BspCNI CTCAG 5 cut(s) 419, 593, 635, 1390, 1453
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 1 cut(s) 1014
BspLI GGNNCC 4 cut(s) 457, 536, 697, 912
BspMAI CTGCAG 2 cut(s) 543, 1756
BspOI GCTAGC 1 cut(s) 1247
BspPI GGATC 8 cut(s) 313, 365, 450, 463, 529, 542, 690, 703
BspQI GCTCTTC 1 cut(s) 960
BsrDI GCAATG 2 cut(s) 1269, 1378
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 1068, 1588
BssSI CACGAG 1 cut(s) 1206
BssT1I CCWWGG 1 cut(s) 1068
Bst2BI CACGAG 1 cut(s) 1206
Bst2UI CCWGG 1 cut(s) 1589
Bst4CI ACNGT 5 cut(s) 601, 952, 1340, 1531, 1659
Bst6I CTCTTC 3 cut(s) 960, 1193, 1731
BstC8I GCNNGC 6 cut(s) 133, 403, 720, 880, 1104, 1245
BstDEI CTNAG 7 cut(s) 83, 406, 580, 622, 1359, 1398, 1440
BstDSI CCRYGG 1 cut(s) 1068
BstENI CCTNNNNNAGG 2 cut(s) 1397, 1586
BstF5I GGATG 3 cut(s) 818, 1004, 1708
BstFNI CGCG 1 cut(s) 291
BstMAI GTCTC 3 cut(s) 107, 625, 1523
BstMWI GCNNNNNNNGC 6 cut(s) 288, 407, 491, 1389, 1409, 1751
BstNI CCWGG 1 cut(s) 1589
BstNSI RCATGY 3 cut(s) 207, 353, 1459
BstSCI CCNGG 2 cut(s) 1164, 1587
BstSFI CTRYAG 3 cut(s) 539, 1050, 1752
BstSLI GKGCMC 2 cut(s) 914, 950
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 4 cut(s) 214, 748, 751, 1118
BstV2I GAAGAC 3 cut(s) 134, 1728, 1762
BstX2I RGATCY 4 cut(s) 455, 534, 695, 1695
BstYI RGATCY 4 cut(s) 455, 534, 695, 1695
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 8 cut(s) 81, 282, 358, 485, 912, 1204, 1392, 1745
BtgI CCRYGG 1 cut(s) 1068
BtsCI GGATG 3 cut(s) 818, 1004, 1708
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 48, 600, 991
Cac8I GCNNGC 6 cut(s) 133, 403, 720, 880, 1104, 1245
CciI TCATGA 1 cut(s) 1014
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 3 cut(s) 280, 910, 911
Csp6I GTAC 5 cut(s) 163, 977, 1078, 1192, 1236
CspCI CAANNNNNGTGG 4 cut(s) 1131, 1166, 1251, 1286
CviQI GTAC 5 cut(s) 163, 977, 1078, 1192, 1236
DdeI CTNAG 7 cut(s) 83, 406, 580, 622, 1359, 1398, 1440
DraIII CACNNNGTG 1 cut(s) 1765
EaeI YGGCCR 1 cut(s) 1743
Eam1104I CTCTTC 3 cut(s) 960, 1193, 1731
EarI CTCTTC 3 cut(s) 960, 1193, 1731
Eco130I CCWWGG 1 cut(s) 1068
Eco147I AGGCCT 1 cut(s) 1204
Eco24I GRGCYC 1 cut(s) 914
Eco32I GATATC 1 cut(s) 1185
Eco57I CTGAAG 4 cut(s) 15, 72, 552, 992
EcoNI CCTNNNNNAGG 2 cut(s) 1397, 1586
EcoO109I RGGNCCY 1 cut(s) 911
EcoRI GAATTC 1 cut(s) 1128
EcoRII CCWGG 1 cut(s) 1587
EcoRV GATATC 1 cut(s) 1185
EcoT14I CCWWGG 1 cut(s) 1068
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 1068
FaqI GGGAC 2 cut(s) 635, 1160
FbaI TGATCA 2 cut(s) 981, 1026
FblI GTMKAC 1 cut(s) 674
Fnu4HI GCNGC 5 cut(s) 228, 463, 762, 765, 1107
FokI GGATG 3 cut(s) 825, 991, 1715
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 5 cut(s) 228, 463, 762, 765, 1107
FspBI CTAG 4 cut(s) 302, 1172, 1244, 1461
GluI GCNGC 5 cut(s) 228, 463, 762, 765, 1107
GsaI CCCAGC 2 cut(s) 77, 656
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 8 cut(s) 81, 282, 358, 485, 912, 1204, 1392, 1745
HapII CCGG 4 cut(s) 198, 283, 459, 1165
HindIII AAGCTT 2 cut(s) 836, 876
HinfI GANTC 5 cut(s) 269, 576, 648, 660, 1516
HpaII CCGG 4 cut(s) 198, 283, 459, 1165
HphI GGTGA 2 cut(s) 1024, 1036
Hpy166II GTNNAC 6 cut(s) 222, 333, 610, 675, 948, 1194
Hpy188I TCNGA 5 cut(s) 34, 268, 375, 1279, 1399
Hpy188III TCNNGA 4 cut(s) 381, 896, 1015, 1627
Hpy8I GTNNAC 6 cut(s) 222, 333, 610, 675, 948, 1194
HpyAV CCTTC 5 cut(s) 106, 709, 967, 1123, 1310
HpyCH4III ACNGT 5 cut(s) 601, 952, 1340, 1531, 1659
HpyF10VI GCNNNNNNNGC 6 cut(s) 288, 407, 491, 1389, 1409, 1751
HpyF3I CTNAG 7 cut(s) 83, 406, 580, 622, 1359, 1398, 1440
Ksp22I TGATCA 2 cut(s) 981, 1026
LguI GCTCTTC 1 cut(s) 960
Lsp1109I GCAGC 4 cut(s) 214, 748, 751, 1118
LweI GCATC 4 cut(s) 239, 474, 1020, 1283
MaeI CTAG 4 cut(s) 302, 1172, 1244, 1461
MaeIII GTNAC 9 cut(s) 58, 595, 841, 1342, 1482, 1525, 1543, 1577, 1592
MfeI CAATTG 2 cut(s) 450, 500
MflI RGATCY 4 cut(s) 455, 534, 695, 1695
MhlI GDGCHC 3 cut(s) 914, 950, 1761
MlsI TGGCCA 1 cut(s) 1745
MluNI TGGCCA 1 cut(s) 1745
MlyI GAGTC 3 cut(s) 654, 657, 1525
MmeI TCCRAC 1 cut(s) 553
Mox20I TGGCCA 1 cut(s) 1745
MscI TGGCCA 1 cut(s) 1745
MseI TTAA 3 cut(s) 711, 825, 1710
MslI CAYNNNNRTG 1 cut(s) 668
Msp20I TGGCCA 1 cut(s) 1745
MspA1I CMGCKG 2 cut(s) 227, 626
MspI CCGG 4 cut(s) 198, 283, 459, 1165
MspR9I CCNGG 2 cut(s) 1166, 1589
MunI CAATTG 2 cut(s) 450, 500
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 1 cut(s) 1589
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 6 cut(s) 288, 407, 491, 1389, 1409, 1751
NciI CCSGG 1 cut(s) 1166
NcoI CCATGG 1 cut(s) 1068
NheI GCTAGC 1 cut(s) 1243
NlaIV GGNNCC 4 cut(s) 457, 536, 697, 912
NmuCI GTSAC 5 cut(s) 595, 1482, 1525, 1543, 1592
NspI RCATGY 3 cut(s) 207, 353, 1459
PagI TCATGA 1 cut(s) 1014
PceI AGGCCT 1 cut(s) 1204
PciI ACATGT 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 960
PctI GAATGC 1 cut(s) 532
PfeI GAWTC 2 cut(s) 269, 576
PkrI GCNGC 5 cut(s) 229, 464, 763, 766, 1108
PleI GAGTC 3 cut(s) 654, 656, 1524
PpsI GAGTC 3 cut(s) 654, 656, 1524
PscI ACATGT 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 1587
PspFI CCCAGC 2 cut(s) 73, 652
PspGI CCWGG 1 cut(s) 1587
PspN4I GGNNCC 4 cut(s) 457, 536, 697, 912
PspOMI GGGCCC 1 cut(s) 910
PspPI GGNCC 3 cut(s) 280, 910, 911
PstI CTGCAG 2 cut(s) 543, 1756
PsuI RGATCY 4 cut(s) 455, 534, 695, 1695
PvuII CAGCTG 2 cut(s) 227, 626
RsaI GTAC 5 cut(s) 164, 978, 1079, 1193, 1237
RsaNI GTAC 5 cut(s) 163, 977, 1078, 1192, 1236
RseI CAYNNNNRTG 1 cut(s) 668
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 3 cut(s) 711, 825, 1710
SatI GCNGC 5 cut(s) 228, 463, 762, 765, 1107
Sau96I GGNCC 3 cut(s) 280, 910, 911
SchI GAGTC 3 cut(s) 654, 657, 1525
ScrFI CCNGG 2 cut(s) 1166, 1589
SduI GDGCHC 3 cut(s) 914, 950, 1761
SfaNI GCATC 4 cut(s) 239, 474, 1020, 1283
SfcI CTRYAG 3 cut(s) 539, 1050, 1752
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 1627
SmoI CTYRAG 1 cut(s) 1627
SseBI AGGCCT 1 cut(s) 1204
SsiI CCGC 2 cut(s) 462, 1022
SspMI CTAG 4 cut(s) 302, 1172, 1244, 1461
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 2 cut(s) 1164, 1587
StyI CCWWGG 1 cut(s) 1068
TaaI ACNGT 5 cut(s) 601, 952, 1340, 1531, 1659
TaqI TCGA 1 cut(s) 233
TatI WGTACW 2 cut(s) 162, 1191
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 2 cut(s) 269, 576
Tru1I TTAA 3 cut(s) 711, 825, 1710
Tru9I TTAA 3 cut(s) 711, 825, 1710
TscAI CASTG 3 cut(s) 55, 600, 991
TseFI GTSAC 5 cut(s) 595, 1482, 1525, 1543, 1592
TseI GCWGC 4 cut(s) 227, 761, 764, 1106
Tsp45I GTSAC 5 cut(s) 595, 1482, 1525, 1543, 1592
TspDTI ATGAA 9 cut(s) 88, 134, 185, 189, 468, 1550, 1719, 1734, 1742
TspRI CASTG 3 cut(s) 55, 600, 991
VneI GTGCAC 1 cut(s) 946
XagI CCTNNNNNAGG 2 cut(s) 1397, 1586
XapI RAATTY 2 cut(s) 802, 1128
XceI RCATGY 3 cut(s) 207, 353, 1459
XmiI GTMKAC 1 cut(s) 674
XspI CTAG 4 cut(s) 302, 1172, 1244, 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.