Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003636

Physical Location & Seq

Genomic Coordinates Reverse (-)

4363760 .. 4364823

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG058800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGTTGCACAGGAAATGATGGATATTTCTTCAGAGAAAGCCAAACCCACTGAAGAAGTTACAGGCAAGAAGCTGGGTGGCCTTAGAACCATGCCCTTCATCATATCAAATGAGACATTTGAAAAGGTTGCAAGCTATGGTCTTCATGCAAATATGATCTTGTACTTGATGAATGAATATCACTTGGGGTTAGCCACCGGAACATGTATCCTGTTCTTGTGGACAGCTGCATCGAACTTTACGCCAATTATGGGGGCTTTTCTCTCCGATTCTCACTTGGGCCGGTTTCGCGTGATCGCTTTAGGATCAGTCGTTAGCCTACTTGGAATGGTGGTGTTATGGTTTACAGCAATTTTTCCACATGCAAGGCCATTCCACTGTGATCCAAAATCTGGAGATAAATGCGTTCCAGCAAGCTCAGCTCAACTCATGCTACTCTTTTCAGCATTTGGTCTCATGTCAATTGGATCCGGCGGCATCAAACCATGTTCATTGGCCTTTGGTGCAGATCAATTGCACAAACCCGAAAACCCGAAGAATGCAAGGATCCTGCAGAGCTTCTTCAACTGGTATTATGCTTCAGTTGGAATCTCAGTTATGATTGCAGTGACAGTCATAGTTTACATTCAAGTCTCAGCTGGTTGGGTTGTGGGTTTTGGAGTCCCAGTAGGACTCATGTTGGTGTCTACTATTCTCTTTTTGTTTGGATCTGTCCTTTATGTTAAAGTGCCTGCAAACAAGAACCTATCTGCTGGATTTGTGCAAGTGATTGCTGCTGCTTGGAAAAACAGACAATTTGATTTGCCAACCAAGAATTTTGATGGATGGTATAGTCTTAAAGGTTCAAAGCTTGTTACCCCAACCAATAAACTAAGGTATAAATACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0080054 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

PTR2

Protein Analysis

296

Amino Acids

32.39

Weight (kDa)

9.44

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	50 - 251	4.4e-06	Major Facilitator Superfamily
PTR2	PF00854	96 - 265	6.5e-33	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52190 AT3G16180
fragaria_vesca	FvH4_1g05500
malus_domestica	MD15G1190800.v1.1
prunus_persica	Prupe.7G226200_v2.0.a1 Prupe.7G226300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091171 RchiOBHm_Chr2g0091191 RchiOBHm_Chr2g0122311
rosa_laevigata	RLG00000016188 RLG00000016190 RLG00000018674
rosa_multiflora	Rmu_sc0002270.1_g000004 Rmu_sc0002270.1_g000013
rosa_roxburghii	Rroxscaffold_2G00121690 Rroxscaffold_2G00150400 Rroxscaffold_2G00150430
rosa_rugosa	Rorug02G0014000 Rorug02G0014200
rosa_samantha	Rh2AG059900 Rh2AG060000 Rh2AG296900 Rh2BG058600 Rh2BG058800 Rh2BG305200 Rh2CG060400 Rh2CG060500 Rh2CG060600 Rh2CG283700 Rh2DG059200 Rh2DG059300 Rh2DG320700
rosa_wichuraiana	Rw2G004980 Rw2G005000 Rw2G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	686
AccII	CGCG	1 cut(s)	291
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	7 cut(s)	313, 377, 462, 475, 541, 554, 715
AcsI	RAATTY	1 cut(s)	814
AcuI	CTGAAG	3 cut(s)	15, 72, 564
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	251, 392
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	122, 565, 629, 846
AluBI	AGCT	8 cut(s)	73, 135, 227, 417, 422, 558, 638, 850
AluI	AGCT	8 cut(s)	73, 135, 227, 417, 422, 558, 638, 850
Alw26I	GTCTC	3 cut(s)	107, 458, 637
AlwI	GGATC	7 cut(s)	313, 377, 462, 475, 541, 554, 715
AoxI	GGCC	4 cut(s)	79, 280, 368, 495
ApeKI	GCWGC	3 cut(s)	227, 773, 776
ApoI	RAATTY	1 cut(s)	814
AspS9I	GGNCC	1 cut(s)	280
BamHI	GGATCC	2 cut(s)	467, 546
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	214, 760, 763
BccI	CCATC	3 cut(s)	13, 815, 819
BciVI	GTATCC	1 cut(s)	218
BcoDI	GTCTC	3 cut(s)	107, 458, 637
BfmI	CTRYAG	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	228, 475, 774, 777
BlpI	GCTNAGC	1 cut(s)	418
BlsI	GCNGC	4 cut(s)	229, 476, 775, 778
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	469, 548
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	2 cut(s)	239, 486
BmuI	ACTGGG	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 392
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	572, 665
BseGI	GGATG	1 cut(s)	830
BseLI	CCNNNNNNNGG	2 cut(s)	251, 392
BseMII	CTCAG	3 cut(s)	432, 606, 648
BseNI	ACTGG	2 cut(s)	572, 665
BseXI	GCAGC	3 cut(s)	214, 760, 763
BseYI	CCCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	81, 282, 370, 497
BsiSI	CCGG	3 cut(s)	198, 283, 471
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	2 cut(s)	251, 392
BsmAI	GTCTC	3 cut(s)	107, 458, 637
BsmFI	GGGAC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	4 cut(s)	81, 282, 370, 497
Bso31I	GGTCTC	1 cut(s)	458
Bsp143I	GATC	8 cut(s)	156, 294, 305, 382, 467, 508, 546, 707
Bsp1720I	GCTNAGC	1 cut(s)	418
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	4 cut(s)	81, 282, 370, 497
BspCNI	CTCAG	3 cut(s)	431, 605, 647
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	469, 548
BspMAI	CTGCAG	1 cut(s)	555
BspPI	GGATC	7 cut(s)	313, 377, 462, 475, 541, 554, 715
BspTNI	GGTCTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	572, 665
BssAI	RCCGGY	1 cut(s)	282
BssMI	GATC	8 cut(s)	156, 294, 305, 382, 467, 508, 546, 707
Bst4CI	ACNGT	2 cut(s)	380, 613
BstC8I	GCNNGC	3 cut(s)	133, 415, 732
BstDEI	CTNAG	5 cut(s)	83, 418, 592, 634, 872
BstF5I	GGATG	1 cut(s)	830
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	8 cut(s)	159, 297, 308, 385, 470, 511, 549, 710
BstMAI	GTCTC	3 cut(s)	107, 458, 637
BstMBI	GATC	8 cut(s)	156, 294, 305, 382, 467, 508, 546, 707
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 419, 503
BstNSI	RCATGY	2 cut(s)	207, 365
BstSFI	CTRYAG	1 cut(s)	551
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	214, 760, 763
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	3 cut(s)	467, 546, 707
BstYI	RGATCY	3 cut(s)	467, 546, 707
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	81, 282, 370, 497
BtsCI	GGATG	1 cut(s)	830
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	48, 376, 612
Cac8I	GCNNGC	3 cut(s)	133, 415, 732
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	8 cut(s)	91, 146, 204, 362, 430, 457, 486, 676
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	5 cut(s)	83, 418, 592, 634, 872
DpnI	GATC	8 cut(s)	158, 296, 307, 384, 469, 510, 548, 709
DpnII	GATC	8 cut(s)	156, 294, 305, 382, 467, 508, 546, 707
Eco31I	GGTCTC	1 cut(s)	458
Eco57I	CTGAAG	3 cut(s)	15, 72, 564
FaeI	CATG	8 cut(s)	94, 149, 207, 365, 433, 460, 489, 679
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	8 cut(s)	90, 145, 203, 361, 429, 456, 485, 675
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	4 cut(s)	228, 475, 774, 777
FokI	GGATG	1 cut(s)	837
Fsp4HI	GCNGC	4 cut(s)	228, 475, 774, 777
GluI	GCNGC	4 cut(s)	228, 475, 774, 777
GsaI	CCCAGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	81, 282, 370, 497
HapII	CCGG	3 cut(s)	198, 283, 471
Hin1II	CATG	8 cut(s)	94, 149, 207, 365, 433, 460, 489, 679
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	4 cut(s)	269, 588, 660, 672
HpaII	CCGG	3 cut(s)	198, 283, 471
Hpy166II	GTNNAC	4 cut(s)	222, 345, 622, 687
Hpy188I	TCNGA	2 cut(s)	34, 268
Hpy188III	TCNNGA	1 cut(s)	393
Hpy8I	GTNNAC	4 cut(s)	222, 345, 622, 687
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	380, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 419, 503
HpyF3I	CTNAG	5 cut(s)	83, 418, 592, 634, 872
Hsp92II	CATG	8 cut(s)	94, 149, 207, 365, 433, 460, 489, 679
Kzo9I	GATC	8 cut(s)	156, 294, 305, 382, 467, 508, 546, 707
Lsp1109I	GCAGC	3 cut(s)	214, 760, 763
LweI	GCATC	2 cut(s)	239, 486
MaeIII	GTNAC	3 cut(s)	58, 607, 853
MalI	GATC	8 cut(s)	158, 296, 307, 384, 469, 510, 548, 709
MboI	GATC	8 cut(s)	156, 294, 305, 382, 467, 508, 546, 707
MboII	GAAGA	5 cut(s)	21, 65, 134, 547, 553
MfeI	CAATTG	2 cut(s)	462, 512
MflI	RGATCY	3 cut(s)	467, 546, 707
MluCI	AATT	6 cut(s)	246, 351, 462, 512, 794, 814
MlyI	GAGTC	2 cut(s)	666, 669
MmeI	TCCRAC	1 cut(s)	565
MseI	TTAA	2 cut(s)	723, 837
MslI	CAYNNNNRTG	1 cut(s)	680
MspA1I	CMGCKG	2 cut(s)	227, 638
MspI	CCGG	3 cut(s)	198, 283, 471
MunI	CAATTG	2 cut(s)	462, 512
Mva1269I	GAATGC	1 cut(s)	544
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	288, 419, 503
NdeII	GATC	8 cut(s)	156, 294, 305, 382, 467, 508, 546, 707
NlaIII	CATG	8 cut(s)	94, 149, 207, 365, 433, 460, 489, 679
NlaIV	GGNNCC	2 cut(s)	469, 548
NmuCI	GTSAC	1 cut(s)	607
NspI	RCATGY	2 cut(s)	207, 365
PciI	ACATGT	1 cut(s)	203
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	269, 588
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	4 cut(s)	229, 476, 775, 778
PleI	GAGTC	2 cut(s)	666, 668
PpsI	GAGTC	2 cut(s)	666, 668
PscI	ACATGT	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	469, 548
PspPI	GGNCC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	555
PsuI	RGATCY	3 cut(s)	467, 546, 707
PvuII	CAGCTG	2 cut(s)	227, 638
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	680
SaqAI	TTAA	2 cut(s)	723, 837
SatI	GCNGC	4 cut(s)	228, 475, 774, 777
Sau3AI	GATC	8 cut(s)	156, 294, 305, 382, 467, 508, 546, 707
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	666, 669
SfaNI	GCATC	2 cut(s)	239, 486
SfcI	CTRYAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	680
Sse9I	AATT	6 cut(s)	246, 351, 462, 512, 794, 814
SsiI	CCGC	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	380, 613
TaqI	TCGA	1 cut(s)	233
TasI	AATT	6 cut(s)	246, 351, 462, 512, 794, 814
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	269, 588
Tru1I	TTAA	2 cut(s)	723, 837
Tru9I	TTAA	2 cut(s)	723, 837
TscAI	CASTG	3 cut(s)	55, 383, 612
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	3 cut(s)	227, 773, 776
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	5 cut(s)	88, 134, 185, 189, 480
TspRI	CASTG	3 cut(s)	55, 383, 612
Van91I	CCANNNNNTGG	1 cut(s)	392
XapI	RAATTY	1 cut(s)	814
XceI	RCATGY	2 cut(s)	207, 365
XmiI	GTMKAC	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.