MD15G1190800.v1.1

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
15008548 .. 15011039
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1190800.v1.1.491

Sequence Viewer

Length: 1779 bp
ATGGGTGCAAAGATGAAGGTGGTCGCTTCAGACCAAACCAAGACCATCACCAAACAGATCACAGGCATGAAGGGTGGCCTTAGAACCATGCCTTTTATCATCTCAAATGAGTCATTCGAAAAGGTTGCAAGCTTTGGTCTTCAGGCTAATATGATCTTGTACTTGGTATTTGAATATCACTTCGACGCCGCTACCGGATCTAGCATCTTGTTCTTGTGGTCAGCCTTGTCAAATTTTACGCCTATTATCGGAGCTTTTCTCGCCGATTCTCTCTGGGGTCGGTTTCATGTGATTTCTATGGGAATAATCGTTAGCCTATTTGGAATGATTGTGTTATGGCTAACAGCAATACTTCCACAAACAAGGCCACATGATTGCGACCCGTACAAAGAAAAATGTGTTCCGGCAAACACAGCTCAAGTCATGCTTCTCTTCGCCTCATTCGGCCTCATGTCGATCGGAGCCGGTGGCATCAAACCATGTTCCTTGGCCTTTGGTACCGATCAACTGGACAATCCAGACAACCCAAATAACGAAAGGCGCTTGCAGAGCTTCTTCAATTGGTATTATGCTTCAGTTGGAGTCTCAGTCATGCTTGCAGTGACAGTCATTGTTTATATTCAGGATCAAATTGGATGGGTTGTAGGGTTTGGAGTCCCTGTAGGGCTCATGTTCTTGTCCACTGTTTTCTTCTTCTTGGGATCTTCCCTTTATGTCAAAGTTCCTCCGAACAAGAACTTGTCTGCTGGATTTCTTCAAGTGTTTGCAGCTGCTTGGAAAAACAAAAACTCGGCGTTGCCACCAAAGAATTTTGATGCATGGTATAGTCCCAAAGGTTCCAAGTTTGTGGCTCCGACGGATAAACTAAGGTACCTAAATAAAGCTTGCATCATAAGAAGTCCTGAAAAGGACATAGGCCCTGATGGTTTGGCCAAAGATCCATGGAGTTTATGCACTGTCAGGCAAGTAGAGGAGCTGAAAGCCTTGATCCGAGTCCTGCCCATTTGGTCTAGCAGCATTATAATCTCAGTTATAATCAGCCAACACGCGTTTCCCGTGCTCCAAGCAAAGTCCATGGAGAGGCATTTGTTTGGCAACATCAAAATTCCAGCAGCCTCATTTTCCGTGTTTGCAATCCTCACTCTCACAATATGGGTGGCCATCTACGACCGTATTATAGTCCCCTTGATATCAAAGTACACGAAAAGGCCACGCGGGCTTAGCTTCAAGCAACGAATAGGGGGTGGACTAGCAATCTCCTGTTTGGCAATGGCAGTGGCTGCAGAGGTTGAGAGGCACAGAAGACAAACAGCAATCCGAGAGGGTTTTTCGAACAAACCGGAGGGTGTAGTCGGCATGTCTGCCAAGTGGATAATCCCACAGCACTGCCTCATTGGACTTGCTGAGGCTCTCAATGCAATAGGGCAACTGGAGTTTTACTACTCTCAGTTCCCAAAGAGCATGTCCAGCATTGCAGTGGCTCTTTTGACGCTAGGGTTTGGAGTTGGGAGCTTGGTGGGGAGTTTGCTTGTTACTATTATCGCTGATGCCACTAGAAAAGGAGGTGTGAGCTGGGTTTCAAGTAACCTCAACAAGGCTCACTATGATTATTATTATTGGATCGTTGCTGGGTTGAGTGTGGTAAATGTCTTTTACTTTTTACTGTGTAGTTGGGCATATGGGCACTGTGAGGATAAAAAGATTTGGGATGAGGGAGAAGGGGAGGCAGAGGAGGAACTGTCCAAGTCCGGGGAGTATGCAGTTATGTTCTCCGCATAA

Protein Analysis

593

Amino Acids

65.21

Weight (kDa)

9.04

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 47 - 427 4.8e-10 Major Facilitator Superfamily
PTR2 PF00854 95 - 520 1.5e-78 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1022, 1034
Acc65I GGTACC 2 cut(s) 497, 870
AccB1I GGYRCC 2 cut(s) 497, 870
AccII CGCG 2 cut(s) 1049, 1215
AciI CCGC 3 cut(s) 189, 1215, 1773
AclWI GGATC 6 cut(s) 205, 633, 709, 932, 982, 1628
AcoI YGGCCR 2 cut(s) 930, 1158
AcsI RAATTY 3 cut(s) 232, 808, 1104
AcuI CTGAAG 3 cut(s) 12, 125, 558
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 5 cut(s) 161, 386, 499, 872, 1199
AfiI CCNNNNNNNGG 4 cut(s) 248, 1080, 1594, 1749
AflIII ACRYGT 1 cut(s) 1047
AgsI TTSAA 5 cut(s) 173, 559, 758, 1228, 1581
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 1 cut(s) 589
AlwI GGATC 6 cut(s) 205, 633, 709, 932, 982, 1628
AlwNI CAGNNNCTG 1 cut(s) 1280
AoxI GGCC 8 cut(s) 76, 365, 445, 489, 916, 930, 1158, 1208
ApeKI GCWGC 5 cut(s) 767, 770, 1014, 1112, 1280
ApoI RAATTY 3 cut(s) 232, 808, 1104
ArsI GACNNNNNNTTYG 2 cut(s) 1448, 1480
Asp718I GGTACC 2 cut(s) 497, 870
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 917
AsuC2I CCSGG 1 cut(s) 1750
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 2 cut(s) 117, 1331
BaeGI GKGCMC 1 cut(s) 1686
BaeI ACNNNNGTAYC 2 cut(s) 854, 887
BalI TGGCCA 2 cut(s) 932, 1160
BanI GGYRCC 2 cut(s) 497, 870
BanII GRGCYC 1 cut(s) 669
BbsI GAAGAC 2 cut(s) 131, 1309
Bbv12I GWGCWC 1 cut(s) 1062
BbvCI CCTCAGC 1 cut(s) 1404
BbvI GCAGC 5 cut(s) 757, 779, 1026, 1124, 1267
BccI CCATC 4 cut(s) 53, 630, 917, 1169
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BcnI CCSGG 1 cut(s) 1750
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 5 cut(s) 201, 1011, 1250, 1493, 1554
BfmI CTRYAG 2 cut(s) 660, 1281
BfoI RGCGCY 1 cut(s) 544
BglI GCCNNNNNGGC 1 cut(s) 1216
BisI GCNGC 6 cut(s) 189, 768, 771, 1015, 1113, 1281
BlpI GCTNAGC 1 cut(s) 1220
BlsI GCNGC 6 cut(s) 190, 769, 772, 1016, 1114, 1282
Bme1390I CCNGG 1 cut(s) 1750
BmgT120I GGNCC 1 cut(s) 917
BmiI GGNNCC 5 cut(s) 463, 499, 838, 852, 872
BmrFI CCNGG 1 cut(s) 1750
BmsI GCATC 5 cut(s) 213, 480, 805, 897, 1537
BpiI GAAGAC 2 cut(s) 131, 1309
BplI GAGNNNNNCTC 2 cut(s) 243, 275
BpmI CTGGAG 1 cut(s) 1451
Bpu10I CCTNAGC 1 cut(s) 1404
Bpu1102I GCTNAGC 1 cut(s) 1220
Bpu14I TTCGAA 2 cut(s) 117, 1331
BpuEI CTTGAG 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 1750
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 486, 941, 1074, 1749
BsaWI WCCGGW 2 cut(s) 194, 1339
BsaXI ACNNNNNCTCC 6 cut(s) 573, 603, 645, 675, 1724, 1754
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 1080, 1594, 1749
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 513, 1434
Bse3DI GCAATG 2 cut(s) 1275, 1470
BseDI CCNNGG 4 cut(s) 486, 941, 1074, 1749
BseGI GGATG 2 cut(s) 641, 1714
BseLI CCNNNNNNNGG 4 cut(s) 248, 1080, 1594, 1749
BseMI GCAATG 2 cut(s) 1275, 1470
BseMII CTCAG 4 cut(s) 600, 1041, 1395, 1460
BseNI ACTGG 2 cut(s) 513, 1434
BseRI GAGGAG 2 cut(s) 986, 1745
BseSI GKGCMC 1 cut(s) 1686
BseXI GCAGC 5 cut(s) 757, 779, 1026, 1124, 1267
BseYI CCCAGC 2 cut(s) 1572, 1628
Bsh1236I CGCG 2 cut(s) 1049, 1215
Bsh1285I CGRYCG 2 cut(s) 459, 1171
BshFI GGCC 8 cut(s) 78, 367, 447, 491, 918, 932, 1160, 1210
BshNI GGYRCC 2 cut(s) 497, 870
BsiEI CGRYCG 2 cut(s) 459, 1171
BsiHKAI GWGCWC 1 cut(s) 1062
BsiSI CCGG 5 cut(s) 195, 404, 465, 1340, 1749
BslFI GGGAC 3 cut(s) 641, 813, 1166
BslI CCNNNNNNNGG 4 cut(s) 248, 1080, 1594, 1749
BsmAI GTCTC 1 cut(s) 589
BsmFI GGGAC 3 cut(s) 641, 813, 1166
BsnI GGCC 8 cut(s) 78, 367, 447, 491, 918, 932, 1160, 1210
Bsp119I TTCGAA 2 cut(s) 117, 1331
Bsp1286I GDGCHC 3 cut(s) 669, 1062, 1686
Bsp1720I GCTNAGC 1 cut(s) 1220
Bsp19I CCATGG 2 cut(s) 941, 1074
BspACI CCGC 3 cut(s) 189, 1215, 1773
BspANI GGCC 8 cut(s) 78, 367, 447, 491, 918, 932, 1160, 1210
BspCNI CTCAG 4 cut(s) 599, 1040, 1396, 1459
BspFNI CGCG 2 cut(s) 1049, 1215
BspLI GGNNCC 5 cut(s) 463, 499, 838, 852, 872
BspMAI CTGCAG 1 cut(s) 1285
BspPI GGATC 6 cut(s) 205, 633, 709, 932, 982, 1628
BspT104I TTCGAA 2 cut(s) 117, 1331
BspT107I GGYRCC 2 cut(s) 497, 870
BsrDI GCAATG 2 cut(s) 1275, 1470
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 2 cut(s) 513, 1434
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 4 cut(s) 486, 941, 1074, 1749
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 3 cut(s) 486, 941, 1074
Bst4CI ACNGT 7 cut(s) 607, 685, 958, 1172, 1665, 1688, 1740
Bst6I CTCTTC 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstBI TTCGAA 2 cut(s) 117, 1331
BstC8I GCNNGC 5 cut(s) 130, 545, 597, 886, 1217
BstDEI CTNAG 7 cut(s) 80, 586, 866, 1027, 1220, 1404, 1446
BstDSI CCRYGG 2 cut(s) 941, 1074
BstENI CCTNNNNNAGG 1 cut(s) 1592
BstF5I GGATG 2 cut(s) 641, 1714
BstFNI CGCG 2 cut(s) 1049, 1215
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 1 cut(s) 543
BstMAI GTCTC 1 cut(s) 589
BstMCI CGRYCG 2 cut(s) 459, 1171
BstMWI GCNNNNNNNGC 8 cut(s) 260, 413, 549, 1216, 1221, 1280, 1415, 1467
BstNSI RCATGY 2 cut(s) 1360, 1465
BstSCI CCNGG 1 cut(s) 1748
BstSFI CTRYAG 2 cut(s) 660, 1281
BstSLI GKGCMC 1 cut(s) 1686
BstUI CGCG 2 cut(s) 1049, 1215
BstV1I GCAGC 5 cut(s) 757, 779, 1026, 1124, 1267
BstV2I GAAGAC 2 cut(s) 131, 1309
BstX2I RGATCY 3 cut(s) 197, 701, 937
BstXI CCANNNNNNTGG 1 cut(s) 847
BstYI RGATCY 3 cut(s) 197, 701, 937
BsuRI GGCC 8 cut(s) 78, 367, 447, 491, 918, 932, 1160, 1210
BtgI CCRYGG 2 cut(s) 941, 1074
BtsCI GGATG 2 cut(s) 641, 1714
BtsI GCAGTG 4 cut(s) 606, 1281, 1384, 1482
BtsIMutI CAGTG 7 cut(s) 606, 681, 954, 1281, 1384, 1482, 1684
Cac8I GCNNGC 5 cut(s) 130, 545, 597, 886, 1217
CaiI CAGNNNCTG 1 cut(s) 1280
CfoI GCGC 1 cut(s) 543
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 917
CseI GACGC 2 cut(s) 194, 1498
Csp6I GTAC 5 cut(s) 160, 385, 498, 871, 1198
CspCI CAANNNNNGTGG 4 cut(s) 1137, 1172, 1257, 1292
CviQI GTAC 5 cut(s) 160, 385, 498, 871, 1198
DdeI CTNAG 7 cut(s) 80, 586, 866, 1027, 1220, 1404, 1446
EaeI YGGCCR 2 cut(s) 930, 1158
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco130I CCWWGG 3 cut(s) 486, 941, 1074
Eco24I GRGCYC 1 cut(s) 669
Eco32I GATATC 1 cut(s) 1191
Eco57I CTGAAG 3 cut(s) 12, 125, 558
EcoNI CCTNNNNNAGG 1 cut(s) 1592
EcoO109I RGGNCCY 1 cut(s) 917
EcoRV GATATC 1 cut(s) 1191
EcoT14I CCWWGG 3 cut(s) 486, 941, 1074
EcoT22I ATGCAT 1 cut(s) 820
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 3 cut(s) 486, 941, 1074
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 3 cut(s) 641, 813, 1166
FauI CCCGC 1 cut(s) 1208
FauNDI CATATG 1 cut(s) 1678
Fnu4HI GCNGC 6 cut(s) 189, 768, 771, 1015, 1113, 1281
FokI GGATG 2 cut(s) 648, 1721
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 6 cut(s) 189, 768, 771, 1015, 1113, 1281
FspBI CTAG 5 cut(s) 201, 1011, 1250, 1493, 1554
GlaI GCGC 1 cut(s) 542
GluI GCNGC 6 cut(s) 189, 768, 771, 1015, 1113, 1281
GsaI CCCAGC 2 cut(s) 1576, 1632
GsuI CTGGAG 1 cut(s) 1451
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 8 cut(s) 78, 367, 447, 491, 918, 932, 1160, 1210
HapII CCGG 5 cut(s) 195, 404, 465, 1340, 1749
HgaI GACGC 2 cut(s) 194, 1498
HhaI GCGC 1 cut(s) 543
Hin1I GRCGYC 1 cut(s) 186
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HindIII AAGCTT 2 cut(s) 130, 882
HinfI GANTC 5 cut(s) 110, 266, 582, 654, 993
HpaII CCGG 5 cut(s) 195, 404, 465, 1340, 1749
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 681, 1200, 1247
Hpy188I TCNGA 7 cut(s) 31, 251, 461, 729, 855, 992, 1319
Hpy188III TCNNGA 3 cut(s) 518, 623, 902
Hpy8I GTNNAC 3 cut(s) 681, 1200, 1247
Hpy99I CGWCG 2 cut(s) 188, 859
HpyAV CCTTC 3 cut(s) 10, 64, 1712
HpyCH4III ACNGT 7 cut(s) 607, 685, 958, 1172, 1665, 1688, 1740
HpyF10VI GCNNNNNNNGC 8 cut(s) 260, 413, 549, 1216, 1221, 1280, 1415, 1467
HpyF3I CTNAG 7 cut(s) 80, 586, 866, 1027, 1220, 1404, 1446
Hsp92I GRCGYC 1 cut(s) 186
HspAI GCGC 1 cut(s) 541
KpnI GGTACC 2 cut(s) 501, 874
LmnI GCTCC 6 cut(s) 251, 461, 856, 973, 1065, 1509
Lsp1109I GCAGC 5 cut(s) 757, 779, 1026, 1124, 1267
LweI GCATC 5 cut(s) 213, 480, 805, 897, 1537
MaeI CTAG 5 cut(s) 201, 1011, 1250, 1493, 1554
MaeIII GTNAC 3 cut(s) 601, 1531, 1583
MboII GAAGA 8 cut(s) 131, 424, 547, 682, 685, 696, 746, 1314
MfeI CAATTG 1 cut(s) 559
MflI RGATCY 3 cut(s) 197, 701, 937
MhlI GDGCHC 3 cut(s) 669, 1062, 1686
MlsI TGGCCA 2 cut(s) 932, 1160
MluCI AATT 5 cut(s) 232, 559, 630, 808, 1104
MluI ACGCGT 1 cut(s) 1047
MluNI TGGCCA 2 cut(s) 932, 1160
MlyI GAGTC 4 cut(s) 119, 591, 663, 1002
MmeI TCCRAC 2 cut(s) 559, 878
Mox20I TGGCCA 2 cut(s) 932, 1160
Mph1103I ATGCAT 1 cut(s) 820
MscI TGGCCA 2 cut(s) 932, 1160
MslI CAYNNNNRTG 2 cut(s) 65, 1475
Msp20I TGGCCA 2 cut(s) 932, 1160
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 5 cut(s) 195, 404, 465, 1340, 1749
MspR9I CCNGG 1 cut(s) 1750
MunI CAATTG 1 cut(s) 559
MvnI CGCG 2 cut(s) 1049, 1215
MwoI GCNNNNNNNGC 8 cut(s) 260, 413, 549, 1216, 1221, 1280, 1415, 1467
NciI CCSGG 1 cut(s) 1750
NcoI CCATGG 2 cut(s) 941, 1074
NdeI CATATG 1 cut(s) 1678
NlaIV GGNNCC 5 cut(s) 463, 499, 838, 852, 872
NmeAIII GCCGAG 1 cut(s) 770
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 2 cut(s) 1360, 1465
NspV TTCGAA 2 cut(s) 117, 1331
PcsI WCGNNNNNNNCGW 1 cut(s) 1053
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 6 cut(s) 190, 769, 772, 1016, 1114, 1282
Ple19I CGATCG 1 cut(s) 459
PleI GAGTC 4 cut(s) 118, 590, 662, 1001
PpsI GAGTC 4 cut(s) 118, 590, 662, 1001
PsiI TTATAA 2 cut(s) 1022, 1034
PspFI CCCAGC 2 cut(s) 1572, 1628
PspN4I GGNNCC 5 cut(s) 463, 499, 838, 852, 872
PspPI GGNCC 1 cut(s) 917
PstI CTGCAG 1 cut(s) 1285
PstNI CAGNNNCTG 1 cut(s) 1280
PsuI RGATCY 3 cut(s) 197, 701, 937
PvuI CGATCG 1 cut(s) 459
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 5 cut(s) 161, 386, 499, 872, 1199
RsaNI GTAC 5 cut(s) 160, 385, 498, 871, 1198
RseI CAYNNNNRTG 2 cut(s) 65, 1475
SatI GCNGC 6 cut(s) 189, 768, 771, 1015, 1113, 1281
Sau96I GGNCC 1 cut(s) 917
SchI GAGTC 4 cut(s) 119, 591, 663, 1002
ScrFI CCNGG 1 cut(s) 1750
SduI GDGCHC 3 cut(s) 669, 1062, 1686
SfaNI GCATC 5 cut(s) 213, 480, 805, 897, 1537
SfcI CTRYAG 2 cut(s) 660, 1281
SfuI TTCGAA 2 cut(s) 117, 1331
SmiMI CAYNNNNRTG 2 cut(s) 65, 1475
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
Sse9I AATT 5 cut(s) 232, 559, 630, 808, 1104
SsiI CCGC 3 cut(s) 189, 1215, 1773
SspMI CTAG 5 cut(s) 201, 1011, 1250, 1493, 1554
StyD4I CCNGG 1 cut(s) 1748
StyI CCWWGG 3 cut(s) 486, 941, 1074
TaaI ACNGT 7 cut(s) 607, 685, 958, 1172, 1665, 1688, 1740
TaqI TCGA 4 cut(s) 117, 183, 455, 1331
TasI AATT 5 cut(s) 232, 559, 630, 808, 1104
TatI WGTACW 2 cut(s) 159, 1197
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 7 cut(s) 606, 688, 961, 1281, 1391, 1482, 1691
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 5 cut(s) 767, 770, 1014, 1112, 1280
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 29, 83, 275
TspGWI ACGGA 2 cut(s) 872, 1114
TspRI CASTG 7 cut(s) 606, 688, 961, 1281, 1391, 1482, 1691
XagI CCTNNNNNAGG 1 cut(s) 1592
XapI RAATTY 3 cut(s) 232, 808, 1104
XceI RCATGY 2 cut(s) 1360, 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 1474
XspI CTAG 5 cut(s) 201, 1011, 1250, 1493, 1554
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.