Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003636

Physical Location & Seq

Genomic Coordinates Reverse (-)

36756742 .. 36757897

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG296900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTTGCAAGGGACATTATGGAGCAAACCAAAGTCACCAAATCAGTTACAAGCAAGAAGCTGGGTGGCCTTAGAACCATGCCTTTTATAATAACAAATGAGGCACTTGAAAAGGTTGCAACCTATGGTCTTCAAGCAAATATGATCTTGTACTTGATCAATGAATATCACTTGGAGGTAGCCACTGGAGCAAGCATTCTGTTCTTGTGGACATCCCTATCGTACTTAACGCCTATCTTGGGGGCTTTTCTCTCTGATTCTTGGTTGGGTCGGTTTTGTGTGATCACTTTGGGAACAATCATTAGCCTACTCGGAATTGTTATTTTATGGTTTACAGCAATATTCCCAAAAGCAAGGCCAGTCCATTGTGATCTGCTATCTGGAGAAAAATGTGTTTCACCAAAGCCAGCTCAACTCTTGCTTCTGTTGTCCTCATTTGTTCTCATGTCCATCGGATCTGGTGGTATCAAACCTTGTTCAATGGCCTTTGGTGCAGACCAAATGGAAAATCCTGAAAACCCAAAGAATGCAAGCATCATGCAGAGCTTCTTCAATTGGTACTATGCATCAGTTGGACTCTCAGTCATGATTGCAGTGACAGTCATGGTTTACATTCAAGACTCGGCTGGTTGGGTTGTGGGTTTTGGAGTTGGTGCAGGAGTCATGTTGCTGTCTACTATCTTCTTTTTGCTTGGCTCTTCTGTTTATGTCAAAGTGCCTGCAAACAAGAAATTGTCTGCTGGATTTCTGCATGTGATTGCTGCAGCTTGGAAAAATAGACGCTTGGATTTGCCGCCAGAGAATTTTGATGGATGGTATAGTCTCAAAGGTTCAAATCTTGTCACCCCAACCCACAAACTAAGCACATTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0080054 GO:0098656

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

PTR2

Protein Analysis

291

Amino Acids

31.77

Weight (kDa)

9.1

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	46 - 258	4.2e-07	Major Facilitator Superfamily
PTR2	PF00854	93 - 261	2.5e-30	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52190 AT3G16180
fragaria_vesca	FvH4_1g05500
malus_domestica	MD15G1190800.v1.1
prunus_persica	Prupe.7G226200_v2.0.a1 Prupe.7G226300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091171 RchiOBHm_Chr2g0091191 RchiOBHm_Chr2g0122311
rosa_laevigata	RLG00000016188 RLG00000016190 RLG00000018674
rosa_multiflora	Rmu_sc0002270.1_g000004 Rmu_sc0002270.1_g000013
rosa_roxburghii	Rroxscaffold_2G00121690 Rroxscaffold_2G00150400 Rroxscaffold_2G00150430
rosa_rugosa	Rorug02G0014000 Rorug02G0014200
rosa_samantha	Rh2AG059900 Rh2AG060000 Rh2AG296900 Rh2BG058600 Rh2BG058800 Rh2BG305200 Rh2CG060400 Rh2CG060500 Rh2CG060600 Rh2CG283700 Rh2DG059200 Rh2DG059300 Rh2DG320700
rosa_wichuraiana	Rw2G004980 Rw2G005000 Rw2G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	674
AciI	CCGC	1 cut(s)	794
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	802
AfaI	GTAC	3 cut(s)	152, 224, 560
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	6 cut(s)	110, 134, 480, 553, 617, 834
AhdI	GACNNNNNGTC	1 cut(s)	581
AluBI	AGCT	4 cut(s)	61, 410, 546, 767
AluI	AGCT	4 cut(s)	61, 410, 546, 767
Alw26I	GTCTC	1 cut(s)	827
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	3 cut(s)	67, 356, 483
ApeKI	GCWGC	2 cut(s)	761, 764
ApoI	RAATTY	1 cut(s)	802
AsuHPI	GGTGA	3 cut(s)	28, 390, 835
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	748, 776
BccI	CCATC	3 cut(s)	458, 803, 807
BclI	TGATCA	2 cut(s)	156, 282
BcoDI	GTCTC	1 cut(s)	827
BfmI	CTRYAG	1 cut(s)	762
BisI	GCNGC	3 cut(s)	762, 765, 794
BlsI	GCNGC	3 cut(s)	763, 766, 795
BmeRI	GACNNNNNGTC	1 cut(s)	581
BmsI	GCATC	2 cut(s)	543, 575
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	2 cut(s)	207, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	190, 359
BseGI	GGATG	2 cut(s)	212, 818
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	190, 359
BseXI	GCAGC	2 cut(s)	748, 776
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	2 cut(s)	513, 675
BshFI	GGCC	3 cut(s)	69, 358, 485
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	2 cut(s)	195, 532
BsnI	GGCC	3 cut(s)	69, 358, 485
Bsp143I	GATC	5 cut(s)	144, 156, 282, 370, 455
BspACI	CCGC	1 cut(s)	794
BspANI	GGCC	3 cut(s)	69, 358, 485
BspCNI	CTCAG	1 cut(s)	593
BspHI	TCATGA	2 cut(s)	585, 872
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	703
BsrI	ACTGG	2 cut(s)	190, 359
BssMI	GATC	5 cut(s)	144, 156, 282, 370, 455
Bst4CI	ACNGT	1 cut(s)	601
Bst6I	CTCTTC	1 cut(s)	703
BstC8I	GCNNGC	4 cut(s)	193, 408, 532, 720
BstDEI	CTNAG	3 cut(s)	71, 580, 860
BstF5I	GGATG	2 cut(s)	212, 818
BstKTI	GATC	5 cut(s)	147, 159, 285, 373, 458
BstMAI	GTCTC	1 cut(s)	827
BstMBI	GATC	5 cut(s)	144, 156, 282, 370, 455
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 491
BstNSI	RCATGY	1 cut(s)	755
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	2 cut(s)	748, 776
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	3 cut(s)	69, 358, 485
BtsCI	GGATG	2 cut(s)	212, 818
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	183, 600
Cac8I	GCNNGC	4 cut(s)	193, 408, 532, 720
CciI	TCATGA	2 cut(s)	585, 872
CseI	GACGC	1 cut(s)	789
Csp6I	GTAC	3 cut(s)	151, 223, 559
CviAII	CATG	8 cut(s)	79, 445, 538, 586, 604, 664, 752, 873
CviQI	GTAC	3 cut(s)	151, 223, 559
DdeI	CTNAG	3 cut(s)	71, 580, 860
DpnI	GATC	5 cut(s)	146, 158, 284, 372, 457
DpnII	GATC	5 cut(s)	144, 156, 282, 370, 455
DriI	GACNNNNNGTC	1 cut(s)	581
Eam1104I	CTCTTC	1 cut(s)	703
Eam1105I	GACNNNNNGTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	703
EcoT22I	ATGCAT	1 cut(s)	568
FaeI	CATG	8 cut(s)	82, 448, 541, 589, 607, 667, 755, 876
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	8 cut(s)	78, 444, 537, 585, 603, 663, 751, 872
FbaI	TGATCA	2 cut(s)	156, 282
FblI	GTMKAC	1 cut(s)	674
Fnu4HI	GCNGC	3 cut(s)	762, 765, 794
FokI	GGATG	2 cut(s)	199, 825
Fsp4HI	GCNGC	3 cut(s)	762, 765, 794
GluI	GCNGC	3 cut(s)	762, 765, 794
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	2 cut(s)	207, 402
HaeIII	GGCC	3 cut(s)	69, 358, 485
HgaI	GACGC	1 cut(s)	789
Hin1II	CATG	8 cut(s)	82, 448, 541, 589, 607, 667, 755, 876
HinfI	GANTC	4 cut(s)	257, 576, 620, 660
HphI	GGTGA	3 cut(s)	28, 390, 835
Hpy166II	GTNNAC	4 cut(s)	210, 333, 610, 675
Hpy188I	TCNGA	3 cut(s)	256, 314, 455
Hpy188III	TCNNGA	5 cut(s)	381, 512, 586, 617, 873
Hpy8I	GTNNAC	4 cut(s)	210, 333, 610, 675
HpyCH4III	ACNGT	1 cut(s)	601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 491
HpyF3I	CTNAG	3 cut(s)	71, 580, 860
Hsp92II	CATG	8 cut(s)	82, 448, 541, 589, 607, 667, 755, 876
Ksp22I	TGATCA	2 cut(s)	156, 282
Kzo9I	GATC	5 cut(s)	144, 156, 282, 370, 455
LguI	GCTCTTC	1 cut(s)	703
LmnI	GCTCC	2 cut(s)	22, 188
Lsp1109I	GCAGC	2 cut(s)	748, 776
LweI	GCATC	2 cut(s)	543, 575
MaeIII	GTNAC	4 cut(s)	34, 46, 595, 841
MalI	GATC	5 cut(s)	146, 158, 284, 372, 457
MboI	GATC	5 cut(s)	144, 156, 282, 370, 455
MboII	GAAGA	4 cut(s)	122, 541, 673, 690
MfeI	CAATTG	1 cut(s)	553
MflI	RGATCY	1 cut(s)	455
MluCI	AATT	4 cut(s)	315, 553, 731, 802
MlyI	GAGTC	3 cut(s)	570, 614, 669
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	3 cut(s)	94, 169, 442
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	871
MunI	CAATTG	1 cut(s)	553
Mva1269I	GAATGC	2 cut(s)	195, 532
MwoI	GCNNNNNNNGC	2 cut(s)	188, 491
NdeII	GATC	5 cut(s)	144, 156, 282, 370, 455
NlaIII	CATG	8 cut(s)	82, 448, 541, 589, 607, 667, 755, 876
NmeAIII	GCCGAG	1 cut(s)	602
NmuCI	GTSAC	3 cut(s)	34, 595, 841
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	755
PagI	TCATGA	2 cut(s)	585, 872
PciSI	GCTCTTC	1 cut(s)	703
PctI	GAATGC	2 cut(s)	195, 532
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	763, 766, 795
PleI	GAGTC	3 cut(s)	570, 614, 668
PpsI	GAGTC	3 cut(s)	570, 614, 668
PsiI	TTATAA	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	3 cut(s)	152, 224, 560
RsaNI	GTAC	3 cut(s)	151, 223, 559
RseI	CAYNNNNRTG	1 cut(s)	871
SapI	GCTCTTC	1 cut(s)	703
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	3 cut(s)	762, 765, 794
Sau3AI	GATC	5 cut(s)	144, 156, 282, 370, 455
SchI	GAGTC	3 cut(s)	570, 614, 669
SetI	ASST	9 cut(s)	63, 117, 125, 180, 412, 475, 548, 769, 832
SfaNI	GCATC	2 cut(s)	543, 575
SfcI	CTRYAG	1 cut(s)	762
SmiMI	CAYNNNNRTG	1 cut(s)	871
Sse9I	AATT	4 cut(s)	315, 553, 731, 802
SsiI	CCGC	1 cut(s)	794
SspI	AATATT	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	601
TasI	AATT	4 cut(s)	315, 553, 731, 802
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	796
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	190, 600
TseFI	GTSAC	3 cut(s)	34, 595, 841
TseI	GCWGC	2 cut(s)	761, 764
Tsp45I	GTSAC	3 cut(s)	34, 595, 841
TspDTI	ATGAA	2 cut(s)	177, 861
TspRI	CASTG	2 cut(s)	190, 600
XapI	RAATTY	1 cut(s)	802
XceI	RCATGY	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	674
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.