Rroxscaffold_2G00150430

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
87819327 .. 87821700
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150430.1

Sequence Viewer

Length: 1647 bp
ATGGTTGCAAAGGACATTATGAAGCAAACCAAAGCCACCAAAGCAGTTACAAGCAAGAAGCTGGGTGGCCTTAGAACCATGCCTTTTATAATAACAAATGAGGCACTTGAAAAGGTTGCAACCTATGGTCTTCAAGCAAATATGATCTTGTACTTGATCTATGAATATCACTTGGAGGGAATTGTTATTTTATGGTTTACAGCAATATTCCCAAAAGCAAGGCCAGTCCATTGTGATCTGCTATCTGGAGAAAAATGTGTTTCACCAAAGCCAGCTCAACTCTTGCTTCTGTTATCCTCATTTGTTCTCATGTCCATCGGATCTGGTGGTATCAAACCTTGTTCAATGGCCTTTGGTGCAGACCAAATGGAAAATCCTGAAAACCCAAAGAATGCAAGCATCATGCAGAGCTTCTTCAATTGGTACTATGCATCAGTTGGAGTCTCAGTCATGATTGCAGTGACAGTCATGGTTTACATTCAAGACTCGGCTGGTTGGGTTGTGGGTTTTGGAGTTGGTGCAGGAGTCATGTTGCTGTCTACTCTCTTCTTTTTGCTTGGCTCTTCTGTTTATGTCAAAGTGCCTGCAAACAAGAAATTGTCTGCTGGATTTCTGCATGTGATTGCTGCAGCTTGGAAAAATAGACACTTGGATTTGCCGCCAGAAAATTTTGATGGATGGTATAGTATCAAAGGTTCAAAGCTTGTCACCCCAACCCACAAACTAAGGTATCTAAACAAAGCTTGCATGATTACAAGTGCTGAGAAGGACTTAAGCCCTGATGGGTTGGCCATAGATCCATGGAGTTTATGCACCGTTAGACAAGTAGAGGAGCTGAAGGTCCTTATCAACGTCCTGCCCATTTGGTCCACCGGCATCATGATTGGGGTGGTCATGAACCAAAACTCATTTCCTGTCGTCCAAGCAAGCACCATGGAGAGGCATATCTTCCCCCACATCAAACTCCCAGCAGCCTCCTTCTCCATCTTTGGAATTCTCACTCTCACAATTTGGGTGGTAGTTTACGACCGGCTTCTAGTTCCATTGATATCAAAGTACACAAAGAGGCCACGTGGATTGACCCGCAAGCAACGAATAGGTGCAGGGCTAGTACTCTCTTGCTTGGCAACTGCAGTGGCAGCAGAGGTTGAGAGGCATAGAAGAAGCACTGCAATCAAAGAAGGATTTGCAAACAATGCGCACGGAGTAGTGACCATGTCTGCAAAGTGGTTAGTGCCACAGCACTGCTTGAGTGGACTAGCCGAGGCGTTCAATGTCATAGGGCAAATAGAGTTCTACTACTCTCAGCTCCCAAAGAGCATGGCTAGTATTGCTGTGTCTCTTTTCACACTTGGGTTTGGAATAGGAAGTTTGCTTGCGAGTCTCATAGTGACTGTTATGAACGATGTGACCAAGAAATGGGGAGTGAGTTGGGTTTCAAGTAACCTCAACCAGGGTCACTATGACTACTACTATTTGGTTTTGACTGTCATGAGCGTGGTTAATTTCTTGTATTATTTACTGTGTAGTTGGGCATATGGGTCCTGCGAGGATAAAACGATTTGGGATGAGGATAATGATGATCATGACAAGAAAGAGGAAGAGATGAAGTCAGAAGAGTATGTAGTTGTTGTAACTGCTGCTTGA

Protein Analysis

548

Amino Acids

60.65

Weight (kDa)

8.73

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 60 - 473 1.7e-69 POT family
MFS_1 PF07690 93 - 379 1.7e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
Acc16I TGCGCA 1 cut(s) 1200
AccB7I CCANNNNNTGG 1 cut(s) 1419
AccI GTMKAC 1 cut(s) 539
AciI CCGC 2 cut(s) 659, 1084
AclWI GGATC 2 cut(s) 328, 791
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 2 cut(s) 667, 993
AcuI CTGAAG 1 cut(s) 857
AcvI CACGTG 1 cut(s) 1073
AfaI GTAC 4 cut(s) 152, 425, 1058, 1113
AfiI CCNNNNNNNGG 3 cut(s) 939, 1419, 1453
AflII CTTAAG 1 cut(s) 772
AgsI TTSAA 8 cut(s) 110, 134, 345, 418, 482, 699, 1273, 1440
AjnI CCWGG 1 cut(s) 1452
AjuI GAANNNNNNNTTGG 2 cut(s) 894, 926
AluBI AGCT 8 cut(s) 61, 275, 411, 632, 703, 743, 835, 1309
AluI AGCT 8 cut(s) 61, 275, 411, 632, 703, 743, 835, 1309
Alw26I GTCTC 3 cut(s) 448, 1344, 1388
AlwI GGATC 2 cut(s) 328, 791
AoxI GGCC 5 cut(s) 67, 221, 348, 789, 1067
ApeKI GCWGC 5 cut(s) 626, 629, 971, 1139, 1640
ApoI RAATTY 2 cut(s) 667, 993
AspLEI GCGC 1 cut(s) 1201
AspS9I GGNCC 3 cut(s) 841, 867, 1542
AsuHPI GGTGA 2 cut(s) 255, 700
AvaII GGWCC 3 cut(s) 841, 867, 1542
BaeI ACNNNNGTAYC 2 cut(s) 713, 746
BalI TGGCCA 1 cut(s) 791
BbrPI CACGTG 1 cut(s) 1073
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 5 cut(s) 613, 641, 983, 1151, 1627
BccI CCATC 5 cut(s) 323, 668, 672, 776, 992
BciT130I CCWGG 1 cut(s) 1454
BclI TGATCA 1 cut(s) 1582
BcoDI GTCTC 3 cut(s) 448, 1344, 1388
BfaI CTAG 4 cut(s) 1037, 1109, 1259, 1326
BfmI CTRYAG 2 cut(s) 627, 1131
BfrI CTTAAG 1 cut(s) 772
BisI GCNGC 6 cut(s) 627, 630, 659, 972, 1140, 1641
BlsI GCNGC 6 cut(s) 628, 631, 660, 973, 1141, 1642
BmcAI AGTACT 1 cut(s) 1113
Bme1390I CCNGG 1 cut(s) 1454
Bme18I GGWCC 3 cut(s) 841, 867, 1542
BmgT120I GGNCC 3 cut(s) 841, 867, 1542
BmiI GGNNCC 1 cut(s) 1543
BmrFI CCNGG 1 cut(s) 1454
BmsI GCATC 3 cut(s) 408, 440, 885
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 1270
BsaAI YACGTR 1 cut(s) 1073
BsaJI CCNNGG 4 cut(s) 800, 933, 1263, 1453
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 939, 1419, 1453
Bse118I RCCGGY 2 cut(s) 872, 1029
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 1454
BseDI CCNNGG 4 cut(s) 800, 933, 1263, 1453
BseGI GGATG 2 cut(s) 683, 1573
BseLI CCNNNNNNNGG 3 cut(s) 939, 1419, 1453
BseMII CTCAG 3 cut(s) 459, 753, 1319
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 5 cut(s) 613, 641, 983, 1151, 1627
BseYI CCCAGC 2 cut(s) 61, 967
BsgI GTGCAG 3 cut(s) 378, 540, 1122
Bsh1285I CGRYCG 1 cut(s) 1030
BshFI GGCC 5 cut(s) 69, 223, 350, 791, 1069
BsiEI CGRYCG 1 cut(s) 1030
BsiSI CCGG 2 cut(s) 873, 1030
BslI CCNNNNNNNGG 3 cut(s) 939, 1419, 1453
BsmAI GTCTC 3 cut(s) 448, 1344, 1388
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 5 cut(s) 69, 223, 350, 791, 1069
Bsp143I GATC 6 cut(s) 144, 156, 235, 320, 796, 1582
Bsp19I CCATGG 2 cut(s) 800, 933
BspACI CCGC 2 cut(s) 659, 1084
BspANI GGCC 5 cut(s) 69, 223, 350, 791, 1069
BspCNI CTCAG 3 cut(s) 458, 754, 1318
BspHI TCATGA 5 cut(s) 450, 879, 894, 1491, 1585
BspLI GGNNCC 1 cut(s) 1543
BspMAI CTGCAG 2 cut(s) 631, 1135
BspPI GGATC 2 cut(s) 328, 791
BspQI GCTCTTC 1 cut(s) 568
BspTI CTTAAG 1 cut(s) 772
BsrFI RCCGGY 2 cut(s) 872, 1029
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 2 cut(s) 872, 1029
BssECI CCNNGG 4 cut(s) 800, 933, 1263, 1453
BssMI GATC 6 cut(s) 144, 156, 235, 320, 796, 1582
BssT1I CCWWGG 2 cut(s) 800, 933
Bst2UI CCWGG 1 cut(s) 1454
Bst4CI ACNGT 5 cut(s) 466, 817, 1396, 1489, 1524
Bst6I CTCTTC 4 cut(s) 551, 568, 1596, 1611
BstAFI CTTAAG 1 cut(s) 772
BstAPI GCANNNNNTGC 1 cut(s) 1196
BstBAI YACGTR 1 cut(s) 1073
BstC8I GCNNGC 7 cut(s) 273, 397, 585, 745, 928, 1088, 1377
BstDEI CTNAG 5 cut(s) 71, 445, 725, 762, 1305
BstDSI CCRYGG 2 cut(s) 800, 933
BstENI CCTNNNNNAGG 1 cut(s) 1451
BstF5I GGATG 2 cut(s) 683, 1573
BstHHI GCGC 1 cut(s) 1201
BstKTI GATC 6 cut(s) 147, 159, 238, 323, 799, 1585
BstMAI GTCTC 3 cut(s) 448, 1344, 1388
BstMBI GATC 6 cut(s) 144, 156, 235, 320, 796, 1582
BstMCI CGRYCG 1 cut(s) 1030
BstMWI GCNNNNNNNGC 5 cut(s) 41, 356, 1139, 1196, 1331
BstNI CCWGG 1 cut(s) 1454
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 1452
BstSFI CTRYAG 2 cut(s) 627, 1131
BstV1I GCAGC 5 cut(s) 613, 641, 983, 1151, 1627
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 320, 796
BstYI RGATCY 2 cut(s) 320, 796
BsuRI GGCC 5 cut(s) 69, 223, 350, 791, 1069
BtgI CCRYGG 2 cut(s) 800, 933
BtsCI GGATG 2 cut(s) 683, 1573
BtsI GCAGTG 4 cut(s) 465, 1140, 1167, 1243
BtsIMutI CAGTG 4 cut(s) 465, 1140, 1167, 1243
Cac8I GCNNGC 7 cut(s) 273, 397, 585, 745, 928, 1088, 1377
CciI TCATGA 5 cut(s) 450, 879, 894, 1491, 1585
CfoI GCGC 1 cut(s) 1201
Cfr10I RCCGGY 2 cut(s) 872, 1029
Cfr13I GGNCC 3 cut(s) 841, 867, 1542
Csp6I GTAC 4 cut(s) 151, 424, 1057, 1112
CspCI CAANNNNNGTGG 6 cut(s) 996, 1031, 1059, 1094, 1116, 1151
CviQI GTAC 4 cut(s) 151, 424, 1057, 1112
DdeI CTNAG 5 cut(s) 71, 445, 725, 762, 1305
DpnI GATC 6 cut(s) 146, 158, 237, 322, 798, 1584
DpnII GATC 6 cut(s) 144, 156, 235, 320, 796, 1582
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 4 cut(s) 551, 568, 1596, 1611
EarI CTCTTC 4 cut(s) 551, 568, 1596, 1611
Eco130I CCWWGG 2 cut(s) 800, 933
Eco32I GATATC 1 cut(s) 1050
Eco47I GGWCC 3 cut(s) 841, 867, 1542
Eco57I CTGAAG 1 cut(s) 857
Eco72I CACGTG 1 cut(s) 1073
EcoNI CCTNNNNNAGG 1 cut(s) 1451
EcoO109I RGGNCCY 2 cut(s) 841, 1542
EcoRI GAATTC 1 cut(s) 993
EcoRII CCWGG 1 cut(s) 1452
EcoRV GATATC 1 cut(s) 1050
EcoT14I CCWWGG 2 cut(s) 800, 933
EcoT22I ATGCAT 1 cut(s) 433
ErhI CCWWGG 2 cut(s) 800, 933
FauI CCCGC 1 cut(s) 1091
FauNDI CATATG 1 cut(s) 1537
FbaI TGATCA 1 cut(s) 1582
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 6 cut(s) 627, 630, 659, 972, 1140, 1641
FokI GGATG 2 cut(s) 690, 1580
Fsp4HI GCNGC 6 cut(s) 627, 630, 659, 972, 1140, 1641
FspAI RTGCGCAY 1 cut(s) 1200
FspBI CTAG 4 cut(s) 1037, 1109, 1259, 1326
FspI TGCGCA 1 cut(s) 1200
GlaI GCGC 1 cut(s) 1200
GluI GCNGC 6 cut(s) 627, 630, 659, 972, 1140, 1641
GsaI CCCAGC 2 cut(s) 65, 971
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 5 cut(s) 69, 223, 350, 791, 1069
HapII CCGG 2 cut(s) 873, 1030
HhaI GCGC 1 cut(s) 1201
Hin6I GCGC 1 cut(s) 1199
HinP1I GCGC 1 cut(s) 1199
HindIII AAGCTT 2 cut(s) 701, 741
HinfI GANTC 4 cut(s) 441, 485, 525, 1381
HpaII CCGG 2 cut(s) 873, 1030
HphI GGTGA 2 cut(s) 255, 700
Hpy166II GTNNAC 7 cut(s) 198, 475, 540, 870, 1024, 1059, 1256
Hpy188I TCNGA 2 cut(s) 320, 1615
Hpy188III TCNNGA 8 cut(s) 246, 377, 451, 482, 880, 895, 1492, 1586
Hpy8I GTNNAC 7 cut(s) 198, 475, 540, 870, 1024, 1059, 1256
HpyAV CCTTC 4 cut(s) 760, 832, 988, 1175
HpyCH4III ACNGT 5 cut(s) 466, 817, 1396, 1489, 1524
HpyCH4IV ACGT 2 cut(s) 852, 1072
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 356, 1139, 1196, 1331
HpyF3I CTNAG 5 cut(s) 71, 445, 725, 762, 1305
HpySE526I ACGT 2 cut(s) 852, 1072
HspAI GCGC 1 cut(s) 1199
Ksp22I TGATCA 1 cut(s) 1582
Kzo9I GATC 6 cut(s) 144, 156, 235, 320, 796, 1582
LguI GCTCTTC 1 cut(s) 568
LmnI GCTCC 2 cut(s) 832, 1314
Lsp1109I GCAGC 5 cut(s) 613, 641, 983, 1151, 1627
LweI GCATC 3 cut(s) 408, 440, 885
MaeI CTAG 4 cut(s) 1037, 1109, 1259, 1326
MaeII ACGT 2 cut(s) 852, 1072
MaeIII GTNAC 9 cut(s) 46, 460, 706, 1210, 1390, 1408, 1442, 1457, 1633
MalI GATC 6 cut(s) 146, 158, 237, 322, 798, 1584
MboI GATC 6 cut(s) 144, 156, 235, 320, 796, 1582
MboII GAAGA 8 cut(s) 122, 406, 538, 555, 940, 1173, 1613, 1628
MfeI CAATTG 1 cut(s) 418
MflI RGATCY 2 cut(s) 320, 796
MlsI TGGCCA 1 cut(s) 791
MluCI AATT 7 cut(s) 180, 418, 596, 667, 993, 1008, 1504
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 4 cut(s) 450, 479, 534, 1390
MmeI TCCRAC 1 cut(s) 418
Mox20I TGGCCA 1 cut(s) 791
Mph1103I ATGCAT 1 cut(s) 433
MscI TGGCCA 1 cut(s) 791
MseI TTAA 2 cut(s) 773, 1503
MslI CAYNNNNRTG 1 cut(s) 1496
Msp20I TGGCCA 1 cut(s) 791
MspCI CTTAAG 1 cut(s) 772
MspI CCGG 2 cut(s) 873, 1030
MspR9I CCNGG 1 cut(s) 1454
MunI CAATTG 1 cut(s) 418
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 1 cut(s) 1454
MwoI GCNNNNNNNGC 5 cut(s) 41, 356, 1139, 1196, 1331
NcoI CCATGG 2 cut(s) 800, 933
NdeI CATATG 1 cut(s) 1537
NdeII GATC 6 cut(s) 144, 156, 235, 320, 796, 1582
NlaIV GGNNCC 1 cut(s) 1543
NmeAIII GCCGAG 2 cut(s) 467, 1288
NmuCI GTSAC 6 cut(s) 460, 706, 1210, 1390, 1408, 1457
NsbI TGCGCA 1 cut(s) 1200
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 1 cut(s) 620
PagI TCATGA 5 cut(s) 450, 879, 894, 1491, 1585
PciSI GCTCTTC 1 cut(s) 568
PctI GAATGC 1 cut(s) 397
PflFI GACNNNGTC 1 cut(s) 1216
PflMI CCANNNNNTGG 1 cut(s) 1419
PkrI GCNGC 6 cut(s) 628, 631, 660, 973, 1141, 1642
PleI GAGTC 4 cut(s) 449, 479, 533, 1389
PmaCI CACGTG 1 cut(s) 1073
PmlI CACGTG 1 cut(s) 1073
PpsI GAGTC 4 cut(s) 449, 479, 533, 1389
Ppu21I YACGTR 1 cut(s) 1073
PpuMI RGGWCCY 2 cut(s) 841, 1542
PsiI TTATAA 1 cut(s) 89
Psp5II RGGWCCY 2 cut(s) 841, 1542
Psp6I CCWGG 1 cut(s) 1452
PspCI CACGTG 1 cut(s) 1073
PspFI CCCAGC 2 cut(s) 61, 967
PspGI CCWGG 1 cut(s) 1452
PspN4I GGNNCC 1 cut(s) 1543
PspPI GGNCC 3 cut(s) 841, 867, 1542
PspPPI RGGWCCY 2 cut(s) 841, 1542
PsrI GAACNNNNNNTAC 2 cut(s) 679, 711
PstI CTGCAG 2 cut(s) 631, 1135
PsuI RGATCY 2 cut(s) 320, 796
PsyI GACNNNGTC 1 cut(s) 1216
RsaI GTAC 4 cut(s) 152, 425, 1058, 1113
RsaNI GTAC 4 cut(s) 151, 424, 1057, 1112
RseI CAYNNNNRTG 1 cut(s) 1496
SapI GCTCTTC 1 cut(s) 568
SaqAI TTAA 2 cut(s) 773, 1503
SatI GCNGC 6 cut(s) 627, 630, 659, 972, 1140, 1641
Sau3AI GATC 6 cut(s) 144, 156, 235, 320, 796, 1582
Sau96I GGNCC 3 cut(s) 841, 867, 1542
ScaI AGTACT 1 cut(s) 1113
SchI GAGTC 4 cut(s) 450, 479, 534, 1390
ScrFI CCNGG 1 cut(s) 1454
SfaNI GCATC 3 cut(s) 408, 440, 885
SfcI CTRYAG 2 cut(s) 627, 1131
SinI GGWCC 3 cut(s) 841, 867, 1542
SmiMI CAYNNNNRTG 1 cut(s) 1496
SmlI CTYRAG 2 cut(s) 772, 1249
SmoI CTYRAG 2 cut(s) 772, 1249
Sse9I AATT 7 cut(s) 180, 418, 596, 667, 993, 1008, 1504
SsiI CCGC 2 cut(s) 659, 1084
SspI AATATT 1 cut(s) 207
SspMI CTAG 4 cut(s) 1037, 1109, 1259, 1326
StyD4I CCNGG 1 cut(s) 1452
StyI CCWWGG 2 cut(s) 800, 933
TaaI ACNGT 5 cut(s) 466, 817, 1396, 1489, 1524
TaiI ACGT 2 cut(s) 855, 1075
TasI AATT 7 cut(s) 180, 418, 596, 667, 993, 1008, 1504
TatI WGTACW 3 cut(s) 150, 1056, 1111
TauI GCSGC 1 cut(s) 661
Tru1I TTAA 2 cut(s) 773, 1503
Tru9I TTAA 2 cut(s) 773, 1503
TscAI CASTG 4 cut(s) 465, 1140, 1174, 1250
TseFI GTSAC 6 cut(s) 460, 706, 1210, 1390, 1408, 1457
TseI GCWGC 5 cut(s) 626, 629, 971, 1139, 1640
Tsp45I GTSAC 6 cut(s) 460, 706, 1210, 1390, 1408, 1457
TspDTI ATGAA 5 cut(s) 35, 177, 911, 1415, 1622
TspGWI ACGGA 1 cut(s) 1218
TspRI CASTG 4 cut(s) 465, 1140, 1174, 1250
Tth111I GACNNNGTC 1 cut(s) 1216
Van91I CCANNNNNTGG 1 cut(s) 1419
Vha464I CTTAAG 1 cut(s) 772
VpaK11BI GGWCC 3 cut(s) 841, 867, 1542
XagI CCTNNNNNAGG 1 cut(s) 1451
XapI RAATTY 2 cut(s) 667, 993
XceI RCATGY 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 539
XspI CTAG 4 cut(s) 1037, 1109, 1259, 1326
ZrmI AGTACT 1 cut(s) 1113
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.