Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003636

Physical Location & Seq

Genomic Coordinates Reverse (-)

4917391 .. 4918074

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG060500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCTACAACAGAACATGAGTGCCACAGGGTCCAAAACGCAAGTAGTCAGCTAAGGAACAACAGAACACCAAACTTATTTACCAACAACTCAAGAACCCTCGGAAAAGAGACCACCATCTCCTGCTTCTATTCTGCATGTGGTGGGGTGATGCTCCAGCTACATGACCATGCCGTCAAAAATGATCAGCAAAGTAGCCCTGTCCTGCCAGACCTCTTCTTTCCATTAGGCGAGTTCCTAACCACAGCACGAGAACTATGCCACAAGACTGACAATTGGAGCAGCAGCAAGAAGAAACCAACTCCCCTTACTATTTTCTCCACCGGAGGTATTAGAGTCAGATTCCCTACCTACTTGGAACCTATGCTTCACTCTCGTGTCACTAAAAGCATGATCTTCACCTTCTTCAGCTCTATTAGAAACACCAGCAGACCTGTCCTCTCTAGCATTATGCCGCCGGGCGTGGATCGATCTCCACTCTACCACCAGCATTCCGCTTCCCCGCTTCCCCTCTTCTTAGTCTCTGTCATCAGTATCTCATATTCTCATAACGACAAAGAAGGCAAGAACTCCGTGCACTCAACCATGGCAGAATACAGGGAGCTAGTGATACAAGTGAAAGCAAGGAAGCTGATTCACTTCAGTGCCAATAGTCAATACATCCTTGCAAATTGCACAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.52

Weight (kDa)

9.51

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52190 AT3G16180
fragaria_vesca	FvH4_1g05500
malus_domestica	MD15G1190800.v1.1
prunus_persica	Prupe.7G226200_v2.0.a1 Prupe.7G226300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091171 RchiOBHm_Chr2g0091191 RchiOBHm_Chr2g0122311
rosa_laevigata	RLG00000016188 RLG00000016190 RLG00000018674
rosa_multiflora	Rmu_sc0002270.1_g000004 Rmu_sc0002270.1_g000013
rosa_roxburghii	Rroxscaffold_2G00121690 Rroxscaffold_2G00150400 Rroxscaffold_2G00150430
rosa_rugosa	Rorug02G0014000 Rorug02G0014200
rosa_samantha	Rh2AG059900 Rh2AG060000 Rh2AG296900 Rh2BG058600 Rh2BG058800 Rh2BG305200 Rh2CG060400 Rh2CG060500 Rh2CG060600 Rh2CG283700 Rh2DG059200 Rh2DG059300 Rh2DG320700
rosa_wichuraiana	Rw2G004980 Rw2G005000 Rw2G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	455, 495, 503
AclWI	GGATC	1 cut(s)	474
AcuI	CTGAAG	2 cut(s)	391, 625
AleI	CACNNNNGTG	2 cut(s)	375, 642
AluBI	AGCT	5 cut(s)	52, 160, 411, 604, 631
AluI	AGCT	5 cut(s)	52, 160, 411, 604, 631
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	2 cut(s)	104, 526
Alw44I	GTGCAC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	474
ApaLI	GTGCAC	1 cut(s)	575
ApeKI	GCWGC	2 cut(s)	282, 285
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	160, 391
AvaII	GGWCC	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	579
BauI	CACGAG	2 cut(s)	249, 375
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	294, 297
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	104, 526
BfaI	CTAG	2 cut(s)	444, 605
BisI	GCNGC	3 cut(s)	283, 286, 455
BlsI	GCNGC	3 cut(s)	284, 287, 456
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	32, 360
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	100, 585
BsaWI	WCCGGW	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	469
BseDI	CCNNGG	2 cut(s)	100, 585
BseGI	GGATG	1 cut(s)	660
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	294, 297
BshVI	ATCGAT	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	2 cut(s)	324, 458
BsmAI	GTCTC	2 cut(s)	104, 526
BsmI	GAATGC	1 cut(s)	490
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	184, 393, 466, 470
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	3 cut(s)	455, 495, 503
BspDI	ATCGAT	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	32, 360
BspPI	GGATC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	100, 585
BssMI	GATC	4 cut(s)	184, 393, 466, 470
BssSI	CACGAG	2 cut(s)	249, 375
BssT1I	CCWWGG	1 cut(s)	585
Bst2BI	CACGAG	2 cut(s)	249, 375
Bst6I	CTCTTC	2 cut(s)	221, 518
BstDEI	CTNAG	2 cut(s)	53, 517
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	660
BstKTI	GATC	4 cut(s)	187, 396, 469, 473
BstMAI	GTCTC	2 cut(s)	104, 526
BstMBI	GATC	4 cut(s)	184, 393, 466, 470
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	457
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	2 cut(s)	294, 297
Bsu15I	ATCGAT	1 cut(s)	469
BsuTUI	ATCGAT	1 cut(s)	469
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	469
CviAII	CATG	6 cut(s)	17, 138, 164, 170, 391, 586
CviJI	RGCY	7 cut(s)	52, 160, 198, 411, 604, 631, 681
CviKI_1	RGCY	7 cut(s)	52, 160, 198, 411, 604, 631, 681
DdeI	CTNAG	2 cut(s)	53, 517
DpnI	GATC	4 cut(s)	186, 395, 468, 472
DpnII	GATC	4 cut(s)	184, 393, 466, 470
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	221, 518
EarI	CTCTTC	2 cut(s)	221, 518
Eco130I	CCWWGG	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	391, 625
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	6 cut(s)	20, 141, 167, 173, 394, 589
FatI	CATG	6 cut(s)	16, 137, 163, 169, 390, 585
FauI	CCCGC	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	283, 286, 455
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	283, 286, 455
FspBI	CTAG	2 cut(s)	444, 605
GluI	GCNGC	3 cut(s)	283, 286, 455
GsuI	CTGGAG	1 cut(s)	140
HapII	CCGG	2 cut(s)	324, 458
Hin1II	CATG	6 cut(s)	20, 141, 167, 173, 394, 589
HinfI	GANTC	3 cut(s)	336, 342, 634
HpaII	CCGG	2 cut(s)	324, 458
HphI	GGTGA	2 cut(s)	160, 391
Hpy166II	GTNNAC	2 cut(s)	6, 577
Hpy188I	TCNGA	2 cut(s)	104, 341
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	2 cut(s)	6, 577
HpyAV	CCTTC	2 cut(s)	412, 554
HpyCH4V	TGCA	4 cut(s)	137, 577, 668, 675
HpyF3I	CTNAG	2 cut(s)	53, 517
Hsp92II	CATG	6 cut(s)	20, 141, 167, 173, 394, 589
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 393, 466, 470
LmnI	GCTCC	3 cut(s)	159, 279, 601
Lsp1109I	GCAGC	2 cut(s)	294, 297
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	444, 605
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	4 cut(s)	186, 395, 468, 472
MboI	GATC	4 cut(s)	184, 393, 466, 470
MboII	GAAGA	5 cut(s)	208, 304, 388, 397, 505
MfeI	CAATTG	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	2 cut(s)	274, 670
MlyI	GAGTC	1 cut(s)	345
MnlI	CCTC	5 cut(s)	110, 224, 320, 449, 521
MslI	CAYNNNNRTG	3 cut(s)	168, 375, 642
MspI	CCGG	2 cut(s)	324, 458
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	490
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	184, 393, 466, 470
NlaIII	CATG	6 cut(s)	20, 141, 167, 173, 394, 589
NlaIV	GGNNCC	2 cut(s)	32, 360
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	141
OliI	CACNNNNGTG	2 cut(s)	375, 642
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	342, 634
PkrI	GCNGC	3 cut(s)	284, 287, 456
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	32, 360
PspPI	GGNCC	1 cut(s)	31
RseI	CAYNNNNRTG	3 cut(s)	168, 375, 642
SatI	GCNGC	3 cut(s)	283, 286, 455
Sau3AI	GATC	4 cut(s)	184, 393, 466, 470
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	141
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	3 cut(s)	168, 375, 642
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	2 cut(s)	274, 670
SsiI	CCGC	3 cut(s)	455, 495, 503
SspMI	CTAG	2 cut(s)	444, 605
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	585
TaqI	TCGA	1 cut(s)	469
TasI	AATT	2 cut(s)	274, 670
TauI	GCSGC	1 cut(s)	457
TfiI	GAWTC	2 cut(s)	342, 634
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	282, 285
Tsp45I	GTSAC	1 cut(s)	379
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	31
XceI	RCATGY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	444, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.