Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003636

Physical Location & Seq

Genomic Coordinates Forward (+)

1194021 .. 1204837

Gene Structure 10817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2319 bp

ATGCAATACCATTTATCAATAGCTACCAAAGTTCTCCTCCTCTTTCTCTTTTCTACGAACTTCAATTGTTCAAACACTCAGTCATGGATCAAAGCCGGTTACCATTACACAGGGGTTGATAATCGATTCTTTGTTTCTGACATAGATTCCACATTGTTCACTCACCTTATATGTGGTTTTGCCCATATAAACTCTTCCACTTACCAGCTCTCAATCGACTCCTCCACCCAAAAAGATATCTCCTCTTTCACAGATTTTGTCAAGCGCAAAAACCCAGAAGTCACAGCCTTGCTATCCATCTGGGGTGGAGGCGAAGACTATTCAGTGTTATTTTCATTGCTGAACCAGTCTTCTCACCGGAGATCTTTCATTGAATCTTCAATAAAGACAGCTAGACTTTATGAGTTTGATGGGCTAGACCTTACAGGGGCCGTGCCAAGAACAAGCATGCATACCACATCTTTGGGAACATTTCTAAATGAGTGGCGTGCTGCGGTGGATTCTGAAGCAAAAAAGCCAGGAAAGTCAGGTTTGCTCTTGACAATGGCACTTCATCATCATATGCAGGTTATGGACACCGTCACTTATCCGATTGACTCAATTAAGAAGAACTTGAATTGGGTTCATCTTCTGGCATATGATTACTATCTTCCTAAACAGGAAAACTTCACACACCCTCATGCTGCTTTATATGACCCAATATCAAATGGGACTAACACGAATAGTCGTGTTAAGGACTTGATAAGCAGAGGACTACCTGCTAGCAAGCTGGTTTTAGGCTTGCCTTACCATGGTTATGGTTGGACTCTTGTGAATCCCAACGACAATAATGTTGGTGCAGCGGCATCAGGTCCTGCGGTTACCATAGACGGGTCCATGGCCTACAAGTTAATCAAATGGTTCATTAAGACATATGGATATGGTGCAGTTCCTACGTACAATGACACTTATGTGGTGAATTACTGCACAATTGGGTCAAGTTGGATTGATTTTGATGATGTAGAGGCTATCAGAGCGAAAGTGTCTTATGCTAAGAAGATGGGGCTTCTTGGCTACAATGTGTTTCAAGTTGGCAATGATGACAATTGGGTGCTCTCTAGGGCAGCAGCTCAAGATGAAGGAGGTCAACAGAACAAGAAACGGTTATTGGTCATTGTTCTGGTCACAATTGCTATGATTATTATCCTACTGGGAACAATGATGTGTTACCTAGAAAGGAGAGTACTCAAGTCAATTGGGATTACAGACAATATCAAAAGATCAGTTTACAGGCTATTGAATATAGTTCCAGGTACAGACAGTTTTGACAGCAATGCTCCTAATCTGCAAGTATTCAGTTACACAACTATCAAAGCAGCTACAAATAACTTTTCGAGTCAGAATAAGCTTGGAGAGGGTGGCTTTGGCCCTGTATACAAGGGTACATTAAGGAAGGGTCAGCAAATAGCTGTGAAAAGACTTTCGAAAACTTCAAACCAAGGCCTTGAAGAGTTTCAAAATGAGGTTACACTTACTGCAACACTGCATCATGTGAATCTAGTTAGAGTTCTGGGATATTGCACCAAAAGGGAAGAAAAGATGCTGATATATGAGTACATGCCAAAGAAAAGCTTGGATCACTACCTCTTTGATCCAAGTAGTTGTAATCTTTTGGATTGGGAGCAACGTGTCCACATCATTGAAGGGGTAATTCAAGGGCTTCTATATCTCCAAGAATACTCAAACTCTACAATAATTCACCGTGATCTGAAAGCAAGCAACATTCTGTTAGATGATGAGATGAAACCGAAAATATCAGATTTTGGTCTAGCCAGAGCTTTCAGAAAGAATGAACATGAGGCAAACACTGGTCGCATTGTAGGAACATATGGCTATGTTCCCCCTGAATATGTAAGAAGAGGCATTTATTCCATGAAATACGATGTTTACAGCTTCGGTGTTCTGCTTCTGCATATCATAAGTGGCAAGAGAAGTTCATGTTTTTATGGCTTAGATGGAAATTTAAACATTCTAGAACACGCATATGAATTGTGGAAAGAAGGCCAAGGCAAGGATTTCATAGATCCAACCCTTGATGATTCGACTTCGTCTTGCAAGCTCTTAAGATGCATGGTGGTAGCCTTATTATGTGTCCAAGAAAATCCAGTAGATAGACCATCCATGCTGGAGGTTTCTTCGATACTCAAGAGCGAAAGTGCGGCCATCATTAGTCCTAAAAAGCCTGCTTTCTCAGTTACGAAGGATGAAGATGAGGATCATATGTACAAAGAAATCTATTCAGTCAATGATGCAACAATGTCCGAAATTGTGCCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2

Protein Analysis

772

Amino Acids

86.8

Weight (kDa)

7.31

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	44 - 360	5.5e-54	Glycosyl hydrolases family 18
Pkinase	PF00069	458 - 723	9.3e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	459 - 726	4.6e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52190 AT3G16180
fragaria_vesca	FvH4_1g05500
malus_domestica	MD15G1190800.v1.1
prunus_persica	Prupe.7G226200_v2.0.a1 Prupe.7G226300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091171 RchiOBHm_Chr2g0091191 RchiOBHm_Chr2g0122311
rosa_laevigata	RLG00000016188 RLG00000016190 RLG00000018674
rosa_multiflora	Rmu_sc0002270.1_g000004 Rmu_sc0002270.1_g000013
rosa_roxburghii	Rroxscaffold_2G00121690 Rroxscaffold_2G00150400 Rroxscaffold_2G00150430
rosa_rugosa	Rorug02G0014000 Rorug02G0014200
rosa_samantha	Rh2AG059900 Rh2AG060000 Rh2AG296900 Rh2BG058600 Rh2BG058800 Rh2BG305200 Rh2CG060400 Rh2CG060500 Rh2CG060600 Rh2CG283700 Rh2DG059200 Rh2DG059300 Rh2DG320700
rosa_wichuraiana	Rw2G004980 Rw2G005000 Rw2G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	556, 766
AccI	GTMKAC	1 cut(s)	1413
AciI	CCGC	4 cut(s)	494, 842, 857, 2198
AclWI	GGATC	5 cut(s)	95, 1623, 1625, 2057, 2262
AcoI	YGGCCR	1 cut(s)	2199
AcsI	RAATTY	1 cut(s)	1999
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	6 cut(s)	938, 1224, 1294, 1423, 1595, 2264
AfiI	CCNNNNNNNGG	4 cut(s)	427, 791, 870, 2050
AflII	CTTAAG	1 cut(s)	2101
AflIII	ACRYGT	1 cut(s)	1666
AjnI	CCWGG	2 cut(s)	517, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	1130, 1162
AleI	CACNNNNGTG	1 cut(s)	950
Alw21I	GWGCWC	1 cut(s)	1095
AlwI	GGATC	5 cut(s)	95, 1623, 1625, 2057, 2262
AlwNI	CAGNNNCTG	1 cut(s)	854
AoxI	GGCC	6 cut(s)	429, 879, 1405, 1480, 2041, 2199
ApeKI	GCWGC	6 cut(s)	491, 683, 839, 1103, 1106, 1355
ApoI	RAATTY	1 cut(s)	1999
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
Asp700I	GAANNNNTTC	1 cut(s)	1491
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	4 cut(s)	429, 851, 873, 1406
AsuHPI	GGTGA	4 cut(s)	155, 347, 967, 1730
AsuII	TTCGAA	1 cut(s)	1463
AsuNHI	GCTAGC	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	851, 873
BaeGI	GKGCMC	1 cut(s)	2313
BbsI	GAAGAC	2 cut(s)	321, 342
Bbv12I	GWGCWC	1 cut(s)	1095
BbvI	GCAGC	6 cut(s)	478, 670, 851, 1115, 1118, 1367
BccI	CCATC	6 cut(s)	305, 404, 1033, 1988, 2164, 2210
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	2 cut(s)	519, 1290
BfaI	CTAG	8 cut(s)	393, 416, 762, 1098, 1211, 1538, 1808, 2012
BfrI	CTTAAG	1 cut(s)	2101
BfuAI	ACCTGC	2 cut(s)	556, 766
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	8 cut(s)	492, 684, 840, 843, 1104, 1107, 1356, 2199
BlsI	GCNGC	8 cut(s)	493, 685, 841, 844, 1105, 1108, 1357, 2200
BmcAI	AGTACT	1 cut(s)	1224
Bme1390I	CCNGG	2 cut(s)	519, 1290
Bme18I	GGWCC	2 cut(s)	851, 873
BmgT120I	GGNCC	4 cut(s)	429, 851, 873, 1406
BmiI	GGNNCC	2 cut(s)	430, 874
BmrFI	CCNGG	2 cut(s)	519, 1290
BmrI	ACTGGG	1 cut(s)	1199
BmsI	GCATC	5 cut(s)	854, 1534, 1569, 2096, 2278
BmtI	GCTAGC	1 cut(s)	765
BmuI	ACTGGG	1 cut(s)	1199
BpiI	GAAGAC	2 cut(s)	321, 342
BpmI	CTGGAG	1 cut(s)	2186
Bpu14I	TTCGAA	1 cut(s)	1463
BpuEI	CTTGAG	3 cut(s)	1095, 1211, 2168
Bsa29I	ATCGAT	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	936
BsaBI	GATNNNNATC	3 cut(s)	645, 1181, 2253
BsaJI	CCNNGG	4 cut(s)	790, 876, 1477, 2044
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	4 cut(s)	427, 791, 870, 2050
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	4 cut(s)	346, 1194, 1852, 2144
Bse3DI	GCAATG	3 cut(s)	335, 1081, 1318
Bse8I	GATNNNNATC	3 cut(s)	645, 1181, 2253
BseBI	CCWGG	2 cut(s)	519, 1290
BseCI	ATCGAT	1 cut(s)	124
BseDI	CCNNGG	4 cut(s)	790, 876, 1477, 2044
BseGI	GGATG	2 cut(s)	2156, 2248
BseJI	GATNNNNATC	3 cut(s)	645, 1181, 2253
BseLI	CCNNNNNNNGG	4 cut(s)	427, 791, 870, 2050
BseMI	GCAATG	3 cut(s)	335, 1081, 1318
BseMII	CTCAG	2 cut(s)	92, 2244
BseNI	ACTGG	4 cut(s)	346, 1194, 1852, 2144
BseRI	GAGGAG	4 cut(s)	26, 29, 211, 232
BseSI	GKGCMC	1 cut(s)	2313
BseXI	GCAGC	6 cut(s)	478, 670, 851, 1115, 1118, 1367
BsgI	GTGCAG	3 cut(s)	858, 945, 949
BshFI	GGCC	6 cut(s)	431, 881, 1407, 1482, 2043, 2201
BshVI	ATCGAT	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	1095
BsiSI	CCGG	2 cut(s)	96, 358
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	4 cut(s)	427, 791, 870, 2050
BsmFI	GGGAC	1 cut(s)	724
BsnI	GGCC	6 cut(s)	431, 881, 1407, 1482, 2043, 2201
Bsp119I	TTCGAA	1 cut(s)	1463
Bsp1286I	GDGCHC	2 cut(s)	1095, 2313
Bsp1407I	TGTACA	1 cut(s)	2262
Bsp143I	GATC	8 cut(s)	87, 362, 1259, 1615, 1630, 1744, 2062, 2254
Bsp19I	CCATGG	2 cut(s)	790, 876
BspACI	CCGC	4 cut(s)	494, 842, 857, 2198
BspANI	GGCC	6 cut(s)	431, 881, 1407, 1482, 2043, 2201
BspCNI	CTCAG	2 cut(s)	91, 2243
BspDI	ATCGAT	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	430, 874
BspMI	ACCTGC	2 cut(s)	556, 766
BspOI	GCTAGC	1 cut(s)	765
BspPI	GGATC	5 cut(s)	95, 1623, 1625, 2057, 2262
BspT104I	TTCGAA	1 cut(s)	1463
BspTI	CTTAAG	1 cut(s)	2101
BsrDI	GCAATG	3 cut(s)	335, 1081, 1318
BsrFI	RCCGGY	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	2262
BsrI	ACTGG	4 cut(s)	346, 1194, 1852, 2144
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	4 cut(s)	790, 876, 1477, 2044
BssMI	GATC	8 cut(s)	87, 362, 1259, 1615, 1630, 1744, 2062, 2254
BssNAI	GTATAC	1 cut(s)	1414
BssT1I	CCWWGG	4 cut(s)	790, 876, 1477, 2044
Bst1107I	GTATAC	1 cut(s)	1414
Bst2UI	CCWGG	2 cut(s)	519, 1290
Bst4CI	ACNGT	4 cut(s)	580, 1143, 1301, 1742
Bst6I	CTCTTC	3 cut(s)	199, 1482, 1891
BstAFI	CTTAAG	1 cut(s)	2101
BstAUI	TGTACA	1 cut(s)	2262
BstBAI	YACGTR	1 cut(s)	936
BstBI	TTCGAA	1 cut(s)	1463
BstC8I	GCNNGC	8 cut(s)	449, 489, 763, 767, 782, 1756, 2096, 2223
BstDEI	CTNAG	4 cut(s)	78, 1032, 1990, 2230
BstDSI	CCRYGG	2 cut(s)	790, 876
BstEII	GGTNACC	2 cut(s)	98, 859
BstF5I	GGATG	2 cut(s)	2156, 2248
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	8 cut(s)	90, 365, 1262, 1618, 1633, 1747, 2065, 2257
BstMBI	GATC	8 cut(s)	87, 362, 1259, 1615, 1630, 1744, 2062, 2254
BstMWI	GCNNNNNNNGC	1 cut(s)	1013
BstNI	CCWGG	2 cut(s)	519, 1290
BstNSI	RCATGY	2 cut(s)	451, 1600
BstPI	GGTNACC	2 cut(s)	98, 859
BstSCI	CCNGG	2 cut(s)	517, 1288
BstSLI	GKGCMC	1 cut(s)	2313
BstSNI	TACGTA	1 cut(s)	936
BstV1I	GCAGC	6 cut(s)	478, 670, 851, 1115, 1118, 1367
BstV2I	GAAGAC	2 cut(s)	321, 342
BstX2I	RGATCY	2 cut(s)	362, 2062
BstXI	CCANNNNNNTGG	2 cut(s)	463, 797
BstYI	RGATCY	2 cut(s)	362, 2062
BstZ17I	GTATAC	1 cut(s)	1414
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	6 cut(s)	431, 881, 1407, 1482, 2043, 2201
BsuTUI	ATCGAT	1 cut(s)	124
BtgI	CCRYGG	2 cut(s)	790, 876
BtsCI	GGATG	2 cut(s)	2156, 2248
BtsI	GCAGTG	1 cut(s)	1520
BtsIMutI	CAGTG	3 cut(s)	330, 1520, 1845
BveI	ACCTGC	2 cut(s)	556, 766
Cac8I	GCNNGC	8 cut(s)	449, 489, 763, 767, 782, 1756, 2096, 2223
CaiI	CAGNNNCTG	1 cut(s)	854
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	4 cut(s)	429, 851, 873, 1406
ClaI	ATCGAT	1 cut(s)	124
Csp6I	GTAC	6 cut(s)	937, 1223, 1293, 1422, 1594, 2263
CviQI	GTAC	6 cut(s)	937, 1223, 1293, 1422, 1594, 2263
DdeI	CTNAG	4 cut(s)	78, 1032, 1990, 2230
DpnI	GATC	8 cut(s)	89, 364, 1261, 1617, 1632, 1746, 2064, 2256
DpnII	GATC	8 cut(s)	87, 362, 1259, 1615, 1630, 1744, 2062, 2254
DraI	TTTAAA	1 cut(s)	2004
EaeI	YGGCCR	1 cut(s)	2199
Eam1104I	CTCTTC	3 cut(s)	199, 1482, 1891
EarI	CTCTTC	3 cut(s)	199, 1482, 1891
Eco105I	TACGTA	1 cut(s)	936
Eco130I	CCWWGG	4 cut(s)	790, 876, 1477, 2044
Eco147I	AGGCCT	1 cut(s)	1482
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	851, 873
Eco57I	CTGAAG	1 cut(s)	525
Eco91I	GGTNACC	2 cut(s)	98, 859
EcoO109I	RGGNCCY	1 cut(s)	851
EcoO65I	GGTNACC	2 cut(s)	98, 859
EcoRII	CCWGG	2 cut(s)	517, 1288
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	4 cut(s)	790, 876, 1477, 2044
EcoT22I	ATGCAT	2 cut(s)	453, 2111
ErhI	CCWWGG	4 cut(s)	790, 876, 1477, 2044
FalI	AAGNNNNNCTT	4 cut(s)	596, 628, 1595, 1627
FaqI	GGGAC	1 cut(s)	724
FauNDI	CATATG	6 cut(s)	561, 637, 913, 1867, 2023, 2259
FblI	GTMKAC	1 cut(s)	1413
Fnu4HI	GCNGC	8 cut(s)	492, 684, 840, 843, 1104, 1107, 1356, 2199
FokI	GGATG	2 cut(s)	2143, 2255
Fsp4HI	GCNGC	8 cut(s)	492, 684, 840, 843, 1104, 1107, 1356, 2199
FspBI	CTAG	8 cut(s)	393, 416, 762, 1098, 1211, 1538, 1808, 2012
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	8 cut(s)	492, 684, 840, 843, 1104, 1107, 1356, 2199
GsuI	CTGGAG	1 cut(s)	2186
HaeIII	GGCC	6 cut(s)	431, 881, 1407, 1482, 2043, 2201
HapII	CCGG	2 cut(s)	96, 358
HhaI	GCGC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	1127
HindII	GTYRAC	1 cut(s)	1127
HindIII	AAGCTT	2 cut(s)	1385, 1609
HpaII	CCGG	2 cut(s)	96, 358
HphI	GGTGA	4 cut(s)	155, 347, 967, 1730
Hpy166II	GTNNAC	6 cut(s)	159, 1127, 1267, 1414, 1672, 1927
Hpy188I	TCNGA	9 cut(s)	139, 505, 591, 1013, 1380, 1749, 1798, 1823, 2302
Hpy188III	TCNNGA	4 cut(s)	538, 1112, 2012, 2185
Hpy8I	GTNNAC	6 cut(s)	159, 1127, 1267, 1414, 1672, 1927
HpyAV	CCTTC	5 cut(s)	1112, 1426, 1676, 2033, 2233
HpyCH4III	ACNGT	4 cut(s)	580, 1143, 1301, 1742
HpyCH4IV	ACGT	2 cut(s)	935, 1666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1013
HpyF3I	CTNAG	4 cut(s)	78, 1032, 1990, 2230
HpySE526I	ACGT	2 cut(s)	935, 1666
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	8 cut(s)	87, 362, 1259, 1615, 1630, 1744, 2062, 2254
LmnI	GCTCC	2 cut(s)	1321, 1660
Lsp1109I	GCAGC	6 cut(s)	478, 670, 851, 1115, 1118, 1367
LweI	GCATC	5 cut(s)	854, 1534, 1569, 2096, 2278
MaeI	CTAG	8 cut(s)	393, 416, 762, 1098, 1211, 1538, 1808, 2012
MaeII	ACGT	2 cut(s)	935, 1666
MaeIII	GTNAC	9 cut(s)	98, 280, 580, 859, 1162, 1205, 1337, 1504, 2233
MalI	GATC	8 cut(s)	89, 364, 1261, 1617, 1632, 1746, 2064, 2256
MboI	GATC	8 cut(s)	87, 362, 1259, 1615, 1630, 1744, 2062, 2254
MfeI	CAATTG	5 cut(s)	64, 969, 1084, 1167, 1233
MflI	RGATCY	2 cut(s)	362, 2062
MhlI	GDGCHC	2 cut(s)	1095, 2313
MlyI	GAGTC	4 cut(s)	212, 590, 799, 1384
MmeI	TCCRAC	3 cut(s)	782, 962, 2090
Mph1103I	ATGCAT	2 cut(s)	453, 2111
MroXI	GAANNNNTTC	1 cut(s)	1491
MseI	TTAA	7 cut(s)	603, 732, 890, 906, 1427, 2003, 2102
MslI	CAYNNNNRTG	4 cut(s)	678, 795, 950, 2022
MspA1I	CMGCKG	1 cut(s)	842
MspCI	CTTAAG	1 cut(s)	2101
MspI	CCGG	2 cut(s)	96, 358
MspR9I	CCNGG	2 cut(s)	519, 1290
MunI	CAATTG	5 cut(s)	64, 969, 1084, 1167, 1233
MvaI	CCWGG	2 cut(s)	519, 1290
MwoI	GCNNNNNNNGC	1 cut(s)	1013
NcoI	CCATGG	2 cut(s)	790, 876
NdeI	CATATG	6 cut(s)	561, 637, 913, 1867, 2023, 2259
NdeII	GATC	8 cut(s)	87, 362, 1259, 1615, 1630, 1744, 2062, 2254
NheI	GCTAGC	1 cut(s)	761
NlaIV	GGNNCC	2 cut(s)	430, 874
NmuCI	GTSAC	3 cut(s)	280, 580, 1162
NsiI	ATGCAT	2 cut(s)	453, 2111
NspI	RCATGY	2 cut(s)	451, 1600
NspV	TTCGAA	1 cut(s)	1463
OliI	CACNNNNGTG	1 cut(s)	950
PaeI	GCATGC	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	1482
PdmI	GAANNNNTTC	1 cut(s)	1491
PfeI	GAWTC	7 cut(s)	126, 146, 374, 500, 814, 1534, 2078
PflFI	GACNNNGTC	2 cut(s)	578, 2086
PkrI	GCNGC	8 cut(s)	493, 685, 841, 844, 1105, 1108, 1357, 2200
PleI	GAGTC	4 cut(s)	212, 590, 799, 1383
PpsI	GAGTC	4 cut(s)	212, 590, 799, 1383
Ppu21I	YACGTR	1 cut(s)	936
PpuMI	RGGWCCY	1 cut(s)	851
Psp5II	RGGWCCY	1 cut(s)	851
Psp6I	CCWGG	2 cut(s)	517, 1288
PspEI	GGTNACC	2 cut(s)	98, 859
PspGI	CCWGG	2 cut(s)	517, 1288
PspN4I	GGNNCC	2 cut(s)	430, 874
PspPI	GGNCC	4 cut(s)	429, 851, 873, 1406
PspPPI	RGGWCCY	1 cut(s)	851
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	2 cut(s)	362, 2062
PsyI	GACNNNGTC	2 cut(s)	578, 2086
RsaI	GTAC	6 cut(s)	938, 1224, 1294, 1423, 1595, 2264
RsaNI	GTAC	6 cut(s)	937, 1223, 1293, 1422, 1594, 2263
RseI	CAYNNNNRTG	4 cut(s)	678, 795, 950, 2022
SaqAI	TTAA	7 cut(s)	603, 732, 890, 906, 1427, 2003, 2102
SatI	GCNGC	8 cut(s)	492, 684, 840, 843, 1104, 1107, 1356, 2199
Sau3AI	GATC	8 cut(s)	87, 362, 1259, 1615, 1630, 1744, 2062, 2254
Sau96I	GGNCC	4 cut(s)	429, 851, 873, 1406
ScaI	AGTACT	1 cut(s)	1224
SchI	GAGTC	4 cut(s)	212, 590, 799, 1384
ScrFI	CCNGG	2 cut(s)	519, 1290
SduI	GDGCHC	2 cut(s)	1095, 2313
SfaNI	GCATC	5 cut(s)	854, 1534, 1569, 2096, 2278
SfuI	TTCGAA	1 cut(s)	1463
SinI	GGWCC	2 cut(s)	851, 873
SmiMI	CAYNNNNRTG	4 cut(s)	678, 795, 950, 2022
SmlI	CTYRAG	4 cut(s)	1110, 1226, 2101, 2183
SmoI	CTYRAG	4 cut(s)	1110, 1226, 2101, 2183
SnaBI	TACGTA	1 cut(s)	936
SphI	GCATGC	1 cut(s)	451
SseBI	AGGCCT	1 cut(s)	1482
SsiI	CCGC	4 cut(s)	494, 842, 857, 2198
SspMI	CTAG	8 cut(s)	393, 416, 762, 1098, 1211, 1538, 1808, 2012
StuI	AGGCCT	1 cut(s)	1482
StyD4I	CCNGG	2 cut(s)	517, 1288
StyI	CCWWGG	4 cut(s)	790, 876, 1477, 2044
TaaI	ACNGT	4 cut(s)	580, 1143, 1301, 1742
TaiI	ACGT	2 cut(s)	938, 1669
TaqI	TCGA	6 cut(s)	124, 216, 1373, 1463, 2081, 2177
TatI	WGTACW	3 cut(s)	1222, 1593, 2262
TauI	GCSGC	2 cut(s)	845, 2201
TfiI	GAWTC	7 cut(s)	126, 146, 374, 500, 814, 1534, 2078
Tru1I	TTAA	7 cut(s)	603, 732, 890, 906, 1427, 2003, 2102
Tru9I	TTAA	7 cut(s)	603, 732, 890, 906, 1427, 2003, 2102
TscAI	CASTG	3 cut(s)	330, 1527, 1852
TseFI	GTSAC	3 cut(s)	280, 580, 1162
TseI	GCWGC	6 cut(s)	491, 683, 839, 1103, 1106, 1355
Tsp45I	GTSAC	3 cut(s)	280, 580, 1162
TspRI	CASTG	3 cut(s)	330, 1527, 1852
Tth111I	GACNNNGTC	2 cut(s)	578, 2086
Vha464I	CTTAAG	1 cut(s)	2101
VpaK11BI	GGWCC	2 cut(s)	851, 873
XapI	RAATTY	1 cut(s)	1999
XbaI	TCTAGA	1 cut(s)	2011
XceI	RCATGY	2 cut(s)	451, 1600
XmiI	GTMKAC	1 cut(s)	1413
XmnI	GAANNNNTTC	1 cut(s)	1491
XspI	CTAG	8 cut(s)	393, 416, 762, 1098, 1211, 1538, 1808, 2012
ZrmI	AGTACT	1 cut(s)	1224
Zsp2I	ATGCAT	2 cut(s)	453, 2111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.