AT1G52330

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014261
Physical Location & Seq
Forward (+)
19488755 .. 19489914
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52330.1

Sequence Viewer

Length: 645 bp
ATGACGGTAGAAGAAGATCCTAAAGCAACTCCGTCATTACCAGACTACAAGCCTTTACCTTCATCATCAAGTCACGAGCTAAACGACGCCGTTCTGATCTCATCACATCCTTCTCCTCCCTCACGACGCCGTTTCATCATCTCTATATTTCTCATATCTTTTGCCTCGATCCTCATCTACATCTTCTGGCCGTCCGATCCACGCATCAAGATCATACGGGTCAAAATTTCCCACGTGCACGTTCACCGCCGTCCGGTGCCGTCTATAGACATGACGTTGCTCGTTACGCTTAAGGTATCAAATGCTGACGTGTACTCTTTTGACTTCACGGATCTTGACGTCACGATTGACTATAGAGGGAAGACGTTAGGTCACGTGAGTTCTGATGGCGGGCACGTGACGGCTTTTGGTTCTTCTTACCTTGACGCGGAGGCTGAGCTTGACGGCGTCATGGTGTTTCCTGACGTCATTCATTTGATTCACGATTTAGCTAAAGGCTCCGTTGAATTTGACACCGTTACGGAGACTAACGGGAAACTTGGCGTTTTGTTCTTCCGTTTCCCTTTAAAGGCAAAAGTGGCATGTGGGATTCTAGTAGATACTGTTAATCAGACAATTTCTCGTCAAAGTTGTAGTCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

214

Amino Acids

23.65

Weight (kDa)

6.11

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 96 - 191 2.3e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 342, 468
AccB1I GGYRCC 1 cut(s) 256
AccII CGCG 1 cut(s) 428
AciI CCGC 3 cut(s) 247, 390, 428
AclWI GGATC 4 cut(s) 11, 163, 191, 339
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 2 cut(s) 225, 506
AcvI CACGTG 3 cut(s) 235, 376, 397
AcyI GRCGYC 5 cut(s) 87, 127, 339, 447, 465
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 253, 427, 568
AflII CTTAAG 1 cut(s) 290
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 506
AhdI GACNNNNNGTC 1 cut(s) 369
AjiI CACGTC 1 cut(s) 310
AluBI AGCT 3 cut(s) 79, 439, 491
AluI AGCT 3 cut(s) 79, 439, 491
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 518
Alw44I GTGCAC 1 cut(s) 236
AlwI GGATC 4 cut(s) 11, 163, 191, 339
AoxI GGCC 1 cut(s) 188
ApaLI GTGCAC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 225, 506
ArsI GACNNNNNNTTYG 1 cut(s) 619
AsuHPI GGTGA 1 cut(s) 236
BaeGI GKGCMC 2 cut(s) 240, 396
BanI GGYRCC 1 cut(s) 256
BauI CACGAG 1 cut(s) 74
BbrPI CACGTG 3 cut(s) 235, 376, 397
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 1 cut(s) 380
BceAI ACGGC 7 cut(s) 74, 114, 175, 234, 244, 417, 460
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 2 cut(s) 264, 352
BfrI CTTAAG 1 cut(s) 290
BlpI GCTNAGC 1 cut(s) 435
BmeRI GACNNNNNGTC 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 258, 499
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 435
BsaAI YACGTR 3 cut(s) 235, 376, 397
BsaBI GATNNNNATC 1 cut(s) 173
BsaHI GRCGYC 5 cut(s) 87, 127, 339, 447, 465
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 427, 568
Bse8I GATNNNNATC 1 cut(s) 173
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 3 cut(s) 253, 427, 568
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 2 cut(s) 240, 396
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 253, 427, 568
BsmAI GTCTC 1 cut(s) 518
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 240, 396
Bsp143I GATC 6 cut(s) 16, 96, 168, 196, 210, 331
Bsp1720I GCTNAGC 1 cut(s) 435
BspACI CCGC 3 cut(s) 247, 390, 428
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 428
BspLI GGNNCC 2 cut(s) 258, 499
BspPI GGATC 4 cut(s) 11, 163, 191, 339
BspT107I GGYRCC 1 cut(s) 256
BspTI CTTAAG 1 cut(s) 290
BssMI GATC 6 cut(s) 16, 96, 168, 196, 210, 331
BssNI GRCGYC 5 cut(s) 87, 127, 339, 447, 465
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 7, 517, 604
BstACI GRCGYC 5 cut(s) 87, 127, 339, 447, 465
BstAFI CTTAAG 1 cut(s) 290
BstBAI YACGTR 3 cut(s) 235, 376, 397
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 428
BstKTI GATC 6 cut(s) 19, 99, 171, 199, 213, 334
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 6 cut(s) 16, 96, 168, 196, 210, 331
BstMWI GCNNNNNNNGC 2 cut(s) 286, 578
BstNSI RCATGY 1 cut(s) 585
BstSFI CTRYAG 2 cut(s) 264, 352
BstSLI GKGCMC 2 cut(s) 240, 396
BstUI CGCG 1 cut(s) 428
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 2 cut(s) 16, 331
BstYI RGATCY 2 cut(s) 16, 331
BsuRI GGCC 1 cut(s) 190
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 392
CseI GACGC 4 cut(s) 95, 135, 434, 436
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 271, 451, 582
CviJI RGCY 8 cut(s) 52, 79, 190, 404, 434, 439, 491, 498
CviKI_1 RGCY 8 cut(s) 52, 79, 190, 404, 434, 439, 491, 498
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 435
DpnI GATC 6 cut(s) 18, 98, 170, 198, 212, 333
DpnII GATC 6 cut(s) 16, 96, 168, 196, 210, 331
DraI TTTAAA 1 cut(s) 567
DriI GACNNNNNGTC 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 188
Eam1105I GACNNNNNGTC 1 cut(s) 369
Eco72I CACGTG 3 cut(s) 235, 376, 397
FaeI CATG 3 cut(s) 274, 454, 585
FaiI YATR 8 cut(s) 146, 155, 215, 266, 272, 354, 452, 583
FatI CATG 3 cut(s) 270, 450, 581
FauI CCCGC 1 cut(s) 383
FokI GGATG 1 cut(s) 93
FspBI CTAG 1 cut(s) 593
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 254
HgaI GACGC 4 cut(s) 95, 135, 434, 436
Hin1I GRCGYC 5 cut(s) 87, 127, 339, 447, 465
Hin1II CATG 3 cut(s) 274, 454, 585
HinfI GANTC 2 cut(s) 478, 589
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 238, 244, 313
Hpy188I TCNGA 4 cut(s) 96, 196, 385, 612
Hpy188III TCNNGA 7 cut(s) 74, 123, 208, 335, 343, 461, 482
Hpy8I GTNNAC 3 cut(s) 238, 244, 313
Hpy99I CGWCG 2 cut(s) 89, 129
HpyAV CCTTC 2 cut(s) 69, 120
HpyCH4III ACNGT 3 cut(s) 7, 517, 604
HpyCH4IV ACGT 9 cut(s) 234, 240, 275, 309, 339, 365, 375, 396, 465
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 578
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 9 cut(s) 234, 240, 275, 309, 339, 365, 375, 396, 465
Hsp92I GRCGYC 5 cut(s) 87, 127, 339, 447, 465
Hsp92II CATG 3 cut(s) 274, 454, 585
Kzo9I GATC 6 cut(s) 16, 96, 168, 196, 210, 331
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 4 cut(s) 54, 172, 267, 474
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 593
MaeII ACGT 9 cut(s) 234, 240, 275, 309, 339, 365, 375, 396, 465
MaeIII GTNAC 6 cut(s) 71, 283, 340, 371, 397, 517
MalI GATC 6 cut(s) 18, 98, 170, 198, 212, 333
MboI GATC 6 cut(s) 16, 96, 168, 196, 210, 331
MboII GAAGA 6 cut(s) 23, 26, 175, 373, 405, 544
MflI RGATCY 2 cut(s) 16, 331
MhlI GDGCHC 2 cut(s) 240, 396
MluCI AATT 3 cut(s) 225, 506, 615
MnlI CCTC 6 cut(s) 126, 130, 175, 182, 350, 424
MseI TTAA 3 cut(s) 291, 566, 606
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 286, 578
NdeII GATC 6 cut(s) 16, 96, 168, 196, 210, 331
NlaIII CATG 3 cut(s) 274, 454, 585
NlaIV GGNNCC 2 cut(s) 258, 499
NmuCI GTSAC 4 cut(s) 71, 340, 371, 397
NspI RCATGY 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfeI GAWTC 2 cut(s) 478, 589
PflFI GACNNNGTC 1 cut(s) 446
PmaCI CACGTG 3 cut(s) 235, 376, 397
PmlI CACGTG 3 cut(s) 235, 376, 397
Ppu21I YACGTR 3 cut(s) 235, 376, 397
PspCI CACGTG 3 cut(s) 235, 376, 397
PspN4I GGNNCC 2 cut(s) 258, 499
PsuI RGATCY 2 cut(s) 16, 331
PsyI GACNNNGTC 1 cut(s) 446
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 3 cut(s) 291, 566, 606
Sau3AI GATC 6 cut(s) 16, 96, 168, 196, 210, 331
SduI GDGCHC 2 cut(s) 240, 396
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 2 cut(s) 264, 352
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 3 cut(s) 225, 506, 615
SsiI CCGC 3 cut(s) 247, 390, 428
SspMI CTAG 1 cut(s) 593
TaaI ACNGT 3 cut(s) 7, 517, 604
TaiI ACGT 9 cut(s) 237, 243, 278, 312, 342, 368, 378, 399, 468
TaqI TCGA 1 cut(s) 167
TasI AATT 3 cut(s) 225, 506, 615
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 2 cut(s) 478, 589
Tru1I TTAA 3 cut(s) 291, 566, 606
Tru9I TTAA 3 cut(s) 291, 566, 606
TseFI GTSAC 4 cut(s) 71, 340, 371, 397
Tsp45I GTSAC 4 cut(s) 71, 340, 371, 397
TspDTI ATGAA 3 cut(s) 51, 124, 461
TspGWI ACGGA 5 cut(s) 21, 344, 490, 536, 545
Tth111I GACNNNGTC 1 cut(s) 446
Vha464I CTTAAG 1 cut(s) 290
VneI GTGCAC 1 cut(s) 236
XapI RAATTY 2 cut(s) 225, 506
XceI RCATGY 1 cut(s) 585
XspI CTAG 1 cut(s) 593
ZraI GACGTC 2 cut(s) 340, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.