Rorug02G0348200

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014261
Physical Location & Seq
Reverse (-)
43658709 .. 43661438
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0348200.1

Sequence Viewer

Length: 744 bp
ATGGGTAACTGGGATTTGAATTTTGTGGTCTCAGTATTGGATTCGAACGTACATTGGAGCTGTGGATTTGAGATTGAAGGCAAAAATGTCAAAATTTGGGCCAAGAAGACTGTTGTACCCAATGCTCTGCAGATATCGGTTATGGTGGTGAAGATAGTGGTCATCAGCCGTATTTTATATGGGATTTCAGCTGTGAGGAGGTTCATACCAAAAGCTCGCCCAAAGGCTGAAGTTAAACCCGACCTGGAGGAGGAAGAGCAAGCTAGTCATGCTGAAAAGGAGAGGGAGTTGCTCAGACATTTCCGTGAACAATCTTTGAGGGCAAAGCTGAAAAACGAAAAGAAAGGAACAAACTGGATGTTAGAGAACTTGCAATTCATTTTGGGTGTGTTCGAATCATTCCTGTTGTGCAAAAGGTTTCCTCCAACTGCTGCTACTGTGAGCTCCGCCCTACTCTTGGGTATATGCAGTCTCCCTGATACCATATTTAGAAATGCTGTGGATATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTGCTGATTTGGCAAAACTAGTTCCTGGCCGAGTCTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTATAAGGAAGATACAATTAGCATTATCAGACCCATTTAGATTGTTATGGGATTATAACAACTATCTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

247

Amino Acids

27.97

Weight (kDa)

8.69

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 161 - 227 2.6e-06 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 674, 726
AciI CCGC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 3 cut(s) 19, 93, 541
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 2 cut(s) 51, 117
AfiI CCNNNNNNNGG 2 cut(s) 250, 457
AgsI TTSAA 2 cut(s) 19, 77
AhlI ACTAGT 1 cut(s) 610
AjiI CACGTC 1 cut(s) 647
AjnI CCWGG 2 cut(s) 243, 616
AluBI AGCT 6 cut(s) 60, 191, 215, 263, 328, 444
AluI AGCT 6 cut(s) 60, 191, 215, 263, 328, 444
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 3 cut(s) 34, 476, 631
AoxI GGCC 2 cut(s) 99, 619
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 3 cut(s) 19, 93, 541
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 160
AsuII TTCGAA 2 cut(s) 44, 393
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BanII GRGCYC 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 418
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 245, 618
BcoDI GTCTC 3 cut(s) 34, 476, 631
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 2 cut(s) 264, 611
BfmI CTRYAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 512
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 245, 618
BmgBI CACGTC 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 245, 618
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 266
Bpu14I TTCGAA 2 cut(s) 44, 393
BsaI GGTCTC 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 457
Bse1I ACTGG 2 cut(s) 14, 359
BseBI CCWGG 2 cut(s) 245, 618
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 250, 457
BseMII CTCAG 3 cut(s) 45, 307, 624
BseNI ACTGG 2 cut(s) 14, 359
BseRI GAGGAG 2 cut(s) 211, 263
BseXI GCAGC 1 cut(s) 418
BshFI GGCC 2 cut(s) 101, 621
BsiHKAI GWGCWC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 250, 457
BsmAI GTCTC 3 cut(s) 34, 476, 631
BsnI GGCC 2 cut(s) 101, 621
Bso31I GGTCTC 1 cut(s) 34
Bsp119I TTCGAA 2 cut(s) 44, 393
Bsp1286I GDGCHC 1 cut(s) 446
BspACI CCGC 1 cut(s) 447
BspANI GGCC 2 cut(s) 101, 621
BspCNI CTCAG 3 cut(s) 44, 306, 625
BspMAI CTGCAG 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 2 cut(s) 44, 393
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 2 cut(s) 14, 359
Bst2UI CCWGG 2 cut(s) 245, 618
Bst4CI ACNGT 2 cut(s) 112, 439
Bst6I CTCTTC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 650
BstBI TTCGAA 2 cut(s) 44, 393
BstC8I GCNNGC 3 cut(s) 217, 261, 513
BstDEI CTNAG 3 cut(s) 31, 293, 633
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 1 cut(s) 363
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 1 cut(s) 511
BstMAI GTCTC 3 cut(s) 34, 476, 631
BstMWI GCNNNNNNNGC 3 cut(s) 269, 602, 650
BstNI CCWGG 2 cut(s) 245, 618
BstSCI CCNGG 2 cut(s) 243, 616
BstSFI CTRYAG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 113
BsuRI GGCC 2 cut(s) 101, 621
BtrI CACGTC 1 cut(s) 647
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 3 cut(s) 217, 261, 513
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 2 cut(s) 50, 116
CviAII CATG 4 cut(s) 269, 536, 561, 665
CviQI GTAC 2 cut(s) 50, 116
DdeI CTNAG 3 cut(s) 31, 293, 633
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 436
Ecl136II GAGCTC 1 cut(s) 444
Eco24I GRGCYC 1 cut(s) 446
Eco31I GGTCTC 1 cut(s) 34
Eco32I GATATC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 444
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 2 cut(s) 243, 616
EcoRV GATATC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 446
FaeI CATG 4 cut(s) 272, 539, 564, 668
FatI CATG 4 cut(s) 268, 535, 560, 664
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 446
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 2 cut(s) 264, 611
GlaI GCGC 1 cut(s) 510
GluI GCNGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 2 cut(s) 101, 621
HhaI GCGC 1 cut(s) 511
Hin1II CATG 4 cut(s) 272, 539, 564, 668
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 4 cut(s) 41, 395, 518, 624
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 4 cut(s) 296, 523, 547, 700
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 112, 439
HpyCH4IV ACGT 2 cut(s) 48, 646
HpyCH4V TGCA 5 cut(s) 130, 373, 411, 468, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 602, 650
HpyF3I CTNAG 3 cut(s) 31, 293, 633
HpySE526I ACGT 2 cut(s) 48, 646
Hsp92II CATG 4 cut(s) 272, 539, 564, 668
HspAI GCGC 1 cut(s) 509
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 57, 449
LpnPI CCDG 8 cut(s) 230, 257, 340, 416, 489, 497, 603, 630
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 631
MaeI CTAG 2 cut(s) 264, 611
MaeII ACGT 2 cut(s) 48, 646
MaeIII GTNAC 3 cut(s) 5, 527, 569
MboII GAAGA 4 cut(s) 118, 163, 266, 691
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 7 cut(s) 19, 93, 374, 541, 548, 669, 686
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 8 cut(s) 189, 192, 241, 244, 276, 312, 432, 628
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 245, 618
MvaI CCWGG 2 cut(s) 245, 618
MwoI GCNNNNNNNGC 3 cut(s) 269, 602, 650
NlaIII CATG 4 cut(s) 272, 539, 564, 668
NmeAIII GCCGAG 1 cut(s) 647
NspV TTCGAA 2 cut(s) 44, 393
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 3 cut(s) 41, 395, 518
PkrI GCNGC 1 cut(s) 433
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
PsiI TTATAA 2 cut(s) 674, 726
Psp124BI GAGCTC 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 243, 616
PspGI CCWGG 2 cut(s) 243, 616
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 51, 117
RsaNI GTAC 2 cut(s) 50, 116
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 1 cut(s) 446
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 432
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 2 cut(s) 245, 618
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 128
SfuI TTCGAA 2 cut(s) 44, 393
SmiMI CAYNNNNRTG 1 cut(s) 303
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 7 cut(s) 19, 93, 374, 541, 548, 669, 686
SsiI CCGC 1 cut(s) 447
SspMI CTAG 2 cut(s) 264, 611
SstI GAGCTC 1 cut(s) 446
StyD4I CCNGG 2 cut(s) 243, 616
TaaI ACNGT 2 cut(s) 112, 439
TaiI ACGT 2 cut(s) 51, 649
TaqI TCGA 2 cut(s) 44, 393
TasI AATT 7 cut(s) 19, 93, 374, 541, 548, 669, 686
TfiI GAWTC 3 cut(s) 41, 395, 518
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 637
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 193, 367
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 637
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 3 cut(s) 19, 93, 541
XspI CTAG 2 cut(s) 264, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.