Prupe.3G070600_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014261
Physical Location & Seq
Forward (+)
5072119 .. 5074305
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G070600.1

Sequence Viewer

Length: 642 bp
ATGGCAACCCCCAACTCACAACCACCACCACCACCTCAATACATCCCATTACTCTCCGACCAAAACTACGTCGTTTCACCAGCATCACTTCCTCACTCCCACCTCCCACGACGACGTCGTACAATCTGCCTCGGCATCACTCTCCTATTAGTCCTAGCAGCCGCCAGCTGCTCCGCTTTCCTCTTCTGGCCGTCCGATCCCTCCCTCAAGATCGTACGGCTGCGGCTTAACAGAGTCCAAGTCCACACGCGGCCGCACGTGGCCATCGACGTGTCCATGTTAGTGACGATTAAGGTCCGAAACGGCGACGTTTACAGAATGGACTACGACGCGCTGGAGGTGGCGGTTGGGTACAGAGGGAGGAGTCTGGGGCACGTGACGTTCCAGCGGGGTCACGTGCGGGCGTTTGGTTCGTCCTACATGGAAGCGGAGGTGGAATTCAATGGGGTCGGGGTGTTCTCTGACGTGGTGCTCCTGCTCGAGGACTTGGCTAAAGGAAAGGTACCGTTTGATACTGTTACGGAGGTCCACGGGCGGCTGGGCTTCCTGTTCTTTGAGTTCCCTTTGCAGGCAAGGGTGTCTTGTGAAGTCATGGTGAACACAGTGAATCAGACAATTTTGCGACATAATTGTTACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

214

Amino Acids

23.87

Weight (kDa)

8.75

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
Acc65I GGTACC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 502
AccII CGCG 2 cut(s) 250, 332
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 3 cut(s) 188, 251, 261
AcsI RAATTY 1 cut(s) 437
AcvI CACGTG 3 cut(s) 259, 376, 397
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 4 cut(s) 121, 216, 353, 504
AfiI CCNNNNNNNGG 2 cut(s) 481, 568
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 1 cut(s) 442
AjiI CACGTC 2 cut(s) 271, 466
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw21I GWGCWC 1 cut(s) 474
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 3 cut(s) 188, 251, 261
ApeKI GCWGC 3 cut(s) 158, 168, 220
ApoI RAATTY 1 cut(s) 437
Asp718I GGTACC 1 cut(s) 502
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 295, 526
AsuHPI GGTGA 2 cut(s) 69, 607
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 2 cut(s) 295, 526
BaeGI GKGCMC 1 cut(s) 375
BalI TGGCCA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 502
BbrPI CACGTG 3 cut(s) 259, 376, 397
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 155, 170, 207
BccI CCATC 1 cut(s) 272
BceAI ACGGC 3 cut(s) 175, 233, 319
BfaI CTAG 1 cut(s) 155
BisI GCNGC 8 cut(s) 159, 162, 169, 221, 224, 251, 254, 536
BlsI GCNGC 8 cut(s) 160, 163, 170, 222, 225, 252, 255, 537
Bme18I GGWCC 2 cut(s) 295, 526
BmeT110I CYCGRG 1 cut(s) 479
BmgBI CACGTC 2 cut(s) 271, 466
BmgT120I GGNCC 2 cut(s) 295, 526
BmiI GGNNCC 1 cut(s) 504
BmsI GCATC 2 cut(s) 92, 144
BpmI CTGGAG 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 191
BsaAI YACGTR 3 cut(s) 259, 376, 397
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 130, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 481, 568
BseDI CCNNGG 2 cut(s) 130, 529
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 481, 568
BseRI GAGGAG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 375
BseX3I CGGCCG 1 cut(s) 251
BseXI GCAGC 3 cut(s) 155, 170, 207
BseYI CCCAGC 1 cut(s) 538
Bsh1236I CGCG 2 cut(s) 250, 332
Bsh1285I CGRYCG 1 cut(s) 254
BshFI GGCC 3 cut(s) 190, 253, 263
BshNI GGYRCC 1 cut(s) 502
BsiEI CGRYCG 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 479
BsiWI CGTACG 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 481, 568
BsnI GGCC 3 cut(s) 190, 253, 263
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 375, 474
Bsp143I GATC 2 cut(s) 196, 210
BspANI GGCC 3 cut(s) 190, 253, 263
BspFNI CGCG 2 cut(s) 250, 332
BspLI GGNNCC 1 cut(s) 504
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 502
BssECI CCNNGG 2 cut(s) 130, 529
BssMI GATC 2 cut(s) 196, 210
BssNI GRCGYC 1 cut(s) 115
Bst4CI ACNGT 3 cut(s) 507, 517, 604
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 115
BstBAI YACGTR 3 cut(s) 259, 376, 397
BstC8I GCNNGC 3 cut(s) 166, 402, 570
BstDSI CCRYGG 1 cut(s) 529
BstENI CCTNNNNNAGG 1 cut(s) 479
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 2 cut(s) 250, 332
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 199, 213
BstMBI GATC 2 cut(s) 196, 210
BstMCI CGRYCG 1 cut(s) 254
BstSLI GKGCMC 1 cut(s) 375
BstUI CGCG 2 cut(s) 250, 332
BstV1I GCAGC 3 cut(s) 155, 170, 207
BstZI CGGCCG 1 cut(s) 251
BsuRI GGCC 3 cut(s) 190, 253, 263
BtgI CCRYGG 1 cut(s) 529
BtrI CACGTC 2 cut(s) 271, 466
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 609
Cac8I GCNNGC 3 cut(s) 166, 402, 570
CciNI GCGGCCGC 1 cut(s) 251
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 295, 526
CseI GACGC 1 cut(s) 338
Csp6I GTAC 4 cut(s) 120, 215, 352, 503
CviAII CATG 3 cut(s) 277, 421, 592
CviQI GTAC 4 cut(s) 120, 215, 352, 503
DpnI GATC 2 cut(s) 198, 212
DpnII GATC 2 cut(s) 196, 210
EaeI YGGCCR 3 cut(s) 188, 251, 261
EagI CGGCCG 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EclXI CGGCCG 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 295, 526
Eco52I CGGCCG 1 cut(s) 251
Eco72I CACGTG 3 cut(s) 259, 376, 397
Eco88I CYCGRG 1 cut(s) 479
EcoNI CCTNNNNNAGG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 437
FaeI CATG 3 cut(s) 280, 424, 595
FaiI YATR 4 cut(s) 278, 422, 593, 627
FalI AAGNNNNNCTT 2 cut(s) 565, 597
FatI CATG 3 cut(s) 276, 420, 591
FauI CCCGC 2 cut(s) 381, 393
Fnu4HI GCNGC 8 cut(s) 159, 162, 169, 221, 224, 251, 254, 536
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 8 cut(s) 159, 162, 169, 221, 224, 251, 254, 536
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 333
GluI GCNGC 8 cut(s) 159, 162, 169, 221, 224, 251, 254, 536
GsaI CCCAGC 1 cut(s) 542
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 3 cut(s) 190, 253, 263
HgaI GACGC 1 cut(s) 338
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 3 cut(s) 280, 424, 595
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 3 cut(s) 234, 364, 607
HphI GGTGA 2 cut(s) 69, 607
Hpy166II GTNNAC 4 cut(s) 244, 313, 529, 598
Hpy188I TCNGA 5 cut(s) 58, 196, 299, 463, 612
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 4 cut(s) 244, 313, 529, 598
Hpy99I CGWCG 7 cut(s) 74, 114, 117, 120, 272, 311, 332
HpyCH4III ACNGT 3 cut(s) 507, 517, 604
HpyCH4IV ACGT 9 cut(s) 69, 115, 258, 270, 309, 375, 380, 396, 465
HpyCH4V TGCA 1 cut(s) 568
HpySE526I ACGT 9 cut(s) 69, 115, 258, 270, 309, 375, 380, 396, 465
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 3 cut(s) 280, 424, 595
HspAI GCGC 1 cut(s) 332
KpnI GGTACC 1 cut(s) 506
Kzo9I GATC 2 cut(s) 196, 210
LmnI GCTCC 2 cut(s) 176, 477
Lsp1109I GCAGC 3 cut(s) 155, 170, 207
LweI GCATC 2 cut(s) 92, 144
MaeI CTAG 1 cut(s) 155
MaeII ACGT 9 cut(s) 69, 115, 258, 270, 309, 375, 380, 396, 465
MaeIII GTNAC 5 cut(s) 283, 376, 392, 517, 632
MalI GATC 2 cut(s) 198, 212
MboI GATC 2 cut(s) 196, 210
MboII GAAGA 1 cut(s) 175
MhlI GDGCHC 2 cut(s) 375, 474
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 3 cut(s) 437, 615, 628
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 243, 373
MmeI TCCRAC 1 cut(s) 81
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 228, 291
MslI CAYNNNNRTG 2 cut(s) 269, 281
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 168, 388
MvnI CGCG 2 cut(s) 250, 332
NdeII GATC 2 cut(s) 196, 210
NlaIII CATG 3 cut(s) 280, 424, 595
NlaIV GGNNCC 1 cut(s) 504
NmeAIII GCCGAG 1 cut(s) 111
NmuCI GTSAC 3 cut(s) 283, 376, 392
NotI GCGGCCGC 1 cut(s) 251
PaeR7I CTCGAG 1 cut(s) 479
PcsI WCGNNNNNNNCGW 2 cut(s) 115, 264
PfeI GAWTC 1 cut(s) 607
Pfl23II CGTACG 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 114
PkrI GCNGC 8 cut(s) 160, 163, 170, 222, 225, 252, 255, 537
PleI GAGTC 2 cut(s) 242, 372
PmaCI CACGTG 3 cut(s) 259, 376, 397
PmlI CACGTG 3 cut(s) 259, 376, 397
PpsI GAGTC 2 cut(s) 242, 372
Ppu21I YACGTR 3 cut(s) 259, 376, 397
PspCI CACGTG 3 cut(s) 259, 376, 397
PspFI CCCAGC 1 cut(s) 538
PspLI CGTACG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 295, 526
PspXI VCTCGAGB 1 cut(s) 479
PsyI GACNNNGTC 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 168
RsaI GTAC 4 cut(s) 121, 216, 353, 504
RsaNI GTAC 4 cut(s) 120, 215, 352, 503
RseI CAYNNNNRTG 2 cut(s) 269, 281
SaqAI TTAA 2 cut(s) 228, 291
SatI GCNGC 8 cut(s) 159, 162, 169, 221, 224, 251, 254, 536
Sau3AI GATC 2 cut(s) 196, 210
Sau96I GGNCC 2 cut(s) 295, 526
SchI GAGTC 2 cut(s) 243, 373
SduI GDGCHC 2 cut(s) 375, 474
SfaNI GCATC 2 cut(s) 92, 144
Sfr274I CTCGAG 1 cut(s) 479
SinI GGWCC 2 cut(s) 295, 526
SlaI CTCGAG 1 cut(s) 479
SmiMI CAYNNNNRTG 2 cut(s) 269, 281
SmlI CTYRAG 2 cut(s) 206, 479
SmoI CTYRAG 2 cut(s) 206, 479
Sse9I AATT 3 cut(s) 437, 615, 628
SspMI CTAG 1 cut(s) 155
TaaI ACNGT 3 cut(s) 507, 517, 604
TaiI ACGT 9 cut(s) 72, 118, 261, 273, 312, 378, 383, 399, 468
TaqI TCGA 2 cut(s) 267, 480
TasI AATT 3 cut(s) 437, 615, 628
TauI GCSGC 5 cut(s) 164, 226, 253, 256, 538
TfiI GAWTC 1 cut(s) 607
Tru1I TTAA 2 cut(s) 228, 291
Tru9I TTAA 2 cut(s) 228, 291
TscAI CASTG 1 cut(s) 609
TseFI GTSAC 3 cut(s) 283, 376, 392
TseI GCWGC 3 cut(s) 158, 168, 220
Tsp45I GTSAC 3 cut(s) 283, 376, 392
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 1 cut(s) 609
Tth111I GACNNNGTC 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 295, 526
XagI CCTNNNNNAGG 1 cut(s) 479
XapI RAATTY 1 cut(s) 437
XhoI CTCGAG 1 cut(s) 479
XspI CTAG 1 cut(s) 155
ZraI GACGTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.