FvH4_6g31230

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014261
Physical Location & Seq
Reverse (-)
24375248 .. 24377253
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31230.t1

Sequence Viewer

Length: 630 bp
ATGGCTTCCTCCAAAACCGAACCACCACCACCACAACACCACCACTACAATCCATTACCCCACGACCAAAACGACAACGTTCTACCATCTTCATACTCCTCCCACCTCCCACAACGCCGCACAACCATTCTTCTCACTGTCCTCCTCCTCCTCTTTTCCTCCCTCTACCTATTCTGGCCCTCCGATCCCTCCGTCAAGATCGTACGCCTCAAGCTCAAGAAAGTCCACGTGCACACCCGGCCGCGCGTAACCATCGACGTGAGCATGGCGGTGAGGATCAAGGTCCGGAACGGCGACGTTTACTCGATGGACTACGATGCGCTGGAGGTCGGGGTTGGGTACAGAGGGAAGAGGCTGGGACAGGTGAGGTTCCAGCAGGGACACGTTAGGGCTTTCGGGTCGTCGTACGTTGACGCCGAGGTGGAGTTCAATGGGGTCGGAGTGTTCTCCGACGTGGTGCTCCTGCTGGAGGACTTGGCCAAGGGAACGGTGCCGTTTGACACTGTTACGGAGGTCCGGGGGAAGCTCGGCGTCCTAGTCTTCCACTTCCCTTTGCGGGCAAGAGTATCGTGTGAAATTTTGGTAAACATGATGAATCAAACAATATTTCGTCACAATTGTTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

210

Amino Acids

23.73

Weight (kDa)

9.27

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 93 - 190 3.8e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 490
AccII CGCG 2 cut(s) 244, 246
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 4 cut(s) 118, 242, 269, 556
AclI AACGTT 1 cut(s) 78
AclWI GGATC 2 cut(s) 179, 284
AcoI YGGCCR 2 cut(s) 239, 477
AcsI RAATTY 1 cut(s) 576
AcvI CACGTG 1 cut(s) 229
AcyI GRCGYC 2 cut(s) 414, 531
AfaI GTAC 3 cut(s) 204, 341, 407
AfiI CCNNNNNNNGG 2 cut(s) 469, 556
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 1 cut(s) 430
AjiI CACGTC 2 cut(s) 259, 454
AluBI AGCT 2 cut(s) 214, 526
AluI AGCT 2 cut(s) 214, 526
Alw21I GWGCWC 2 cut(s) 234, 462
Alw44I GTGCAC 1 cut(s) 230
AlwI GGATC 2 cut(s) 179, 284
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 3 cut(s) 176, 239, 477
ApaLI GTGCAC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 576
AspLEI GCGC 2 cut(s) 246, 322
AspS9I GGNCC 3 cut(s) 177, 283, 514
AsuC2I CCSGG 2 cut(s) 238, 518
AsuHPI GGTGA 2 cut(s) 283, 376
AvaII GGWCC 2 cut(s) 283, 514
BaeGI GKGCMC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 490
BbrPI CACGTG 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 2 cut(s) 234, 462
BccI CCATC 3 cut(s) 94, 260, 301
BceAI ACGGC 2 cut(s) 307, 478
BcgI CGANNNNNNTGC 2 cut(s) 549, 583
BcnI CCSGG 2 cut(s) 238, 518
BfaI CTAG 1 cut(s) 536
BisI GCNGC 2 cut(s) 118, 242
BlsI GCNGC 2 cut(s) 119, 243
Bme1390I CCNGG 2 cut(s) 238, 518
Bme18I GGWCC 2 cut(s) 283, 514
BmgBI CACGTC 2 cut(s) 259, 454
BmgT120I GGNCC 3 cut(s) 177, 283, 514
BmiI GGNNCC 2 cut(s) 371, 492
BmrFI CCNGG 2 cut(s) 238, 518
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 532
BpmI CTGGAG 2 cut(s) 344, 488
BpuEI CTTGAG 2 cut(s) 194, 200
BpuMI CCSGG 2 cut(s) 238, 518
BsaAI YACGTR 1 cut(s) 229
BsaHI GRCGYC 2 cut(s) 414, 531
BsaJI CCNNGG 3 cut(s) 417, 480, 517
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 556
BseAI TCCGGA 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 417, 480, 517
BseLI CCNNNNNNNGG 2 cut(s) 469, 556
BseRI GAGGAG 4 cut(s) 88, 134, 137, 140
BseSI GKGCMC 1 cut(s) 234
BseX3I CGGCCG 1 cut(s) 239
BseYI CCCAGC 1 cut(s) 355
Bsh1236I CGCG 2 cut(s) 244, 246
Bsh1285I CGRYCG 1 cut(s) 242
BshFI GGCC 3 cut(s) 178, 241, 479
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 234, 462
BsiSI CCGG 3 cut(s) 238, 286, 517
BsiWI CGTACG 2 cut(s) 202, 405
BslFI GGGAC 2 cut(s) 372, 393
BslI CCNNNNNNNGG 2 cut(s) 469, 556
BsmFI GGGAC 2 cut(s) 372, 393
BsnI GGCC 3 cut(s) 178, 241, 479
Bsp1286I GDGCHC 2 cut(s) 234, 462
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 184, 198, 276
BspACI CCGC 4 cut(s) 118, 242, 269, 556
BspANI GGCC 3 cut(s) 178, 241, 479
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 2 cut(s) 244, 246
BspLI GGNNCC 2 cut(s) 371, 492
BspPI GGATC 2 cut(s) 179, 284
BspT107I GGYRCC 1 cut(s) 490
BssECI CCNNGG 3 cut(s) 417, 480, 517
BssMI GATC 3 cut(s) 184, 198, 276
BssNI GRCGYC 2 cut(s) 414, 531
BssT1I CCWWGG 1 cut(s) 480
Bst4CI ACNGT 3 cut(s) 139, 490, 505
Bst6I CTCTTC 1 cut(s) 344
BstACI GRCGYC 2 cut(s) 414, 531
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 558
BstENI CCTNNNNNAGG 1 cut(s) 467
BstFNI CGCG 2 cut(s) 244, 246
BstHHI GCGC 2 cut(s) 246, 322
BstKTI GATC 3 cut(s) 187, 201, 279
BstMBI GATC 3 cut(s) 184, 198, 276
BstMCI CGRYCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 236, 516
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 2 cut(s) 244, 246
BstV2I GAAGAC 1 cut(s) 532
BstZI CGGCCG 1 cut(s) 239
BsuRI GGCC 3 cut(s) 178, 241, 479
BtrI CACGTC 2 cut(s) 259, 454
BtsIMutI CAGTG 2 cut(s) 135, 501
Cac8I GCNNGC 1 cut(s) 558
CfoI GCGC 2 cut(s) 246, 322
Cfr13I GGNCC 3 cut(s) 177, 283, 514
CseI GACGC 2 cut(s) 422, 520
Csp6I GTAC 3 cut(s) 203, 340, 406
CviAII CATG 2 cut(s) 265, 589
CviJI RGCY 8 cut(s) 5, 178, 214, 241, 355, 392, 479, 526
CviKI_1 RGCY 8 cut(s) 5, 178, 214, 241, 355, 392, 479, 526
CviQI GTAC 3 cut(s) 203, 340, 406
DpnI GATC 3 cut(s) 186, 200, 278
DpnII GATC 3 cut(s) 184, 198, 276
EaeI YGGCCR 2 cut(s) 239, 477
EagI CGGCCG 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
EclXI CGGCCG 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 283, 514
Eco52I CGGCCG 1 cut(s) 239
Eco72I CACGTG 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 2 cut(s) 268, 592
FaiI YATR 4 cut(s) 94, 266, 590, 624
FaqI GGGAC 2 cut(s) 372, 393
FatI CATG 2 cut(s) 264, 588
FauI CCCGC 1 cut(s) 549
Fnu4HI GCNGC 2 cut(s) 118, 242
Fsp4HI GCNGC 2 cut(s) 118, 242
FspBI CTAG 1 cut(s) 536
GlaI GCGC 2 cut(s) 245, 321
GluI GCNGC 2 cut(s) 118, 242
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 2 cut(s) 344, 488
HaeIII GGCC 3 cut(s) 178, 241, 479
HapII CCGG 3 cut(s) 238, 286, 517
HgaI GACGC 2 cut(s) 422, 520
HhaI GCGC 2 cut(s) 246, 322
Hin1I GRCGYC 2 cut(s) 414, 531
Hin1II CATG 2 cut(s) 268, 592
Hin6I GCGC 2 cut(s) 244, 320
HinP1I GCGC 2 cut(s) 244, 320
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 1 cut(s) 595
HpaII CCGG 3 cut(s) 238, 286, 517
HphI GGTGA 2 cut(s) 283, 376
Hpy166II GTNNAC 5 cut(s) 226, 232, 301, 412, 586
Hpy188I TCNGA 3 cut(s) 184, 440, 451
Hpy188III TCNNGA 3 cut(s) 196, 217, 286
Hpy8I GTNNAC 5 cut(s) 226, 232, 301, 412, 586
Hpy99I CGWCG 4 cut(s) 260, 299, 406, 455
HpyCH4III ACNGT 3 cut(s) 139, 490, 505
HpyCH4IV ACGT 7 cut(s) 78, 228, 258, 297, 384, 408, 453
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpySE526I ACGT 7 cut(s) 78, 228, 258, 297, 384, 408, 453
Hsp92I GRCGYC 2 cut(s) 414, 531
Hsp92II CATG 2 cut(s) 268, 592
HspAI GCGC 2 cut(s) 244, 320
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 3 cut(s) 184, 198, 276
LmnI GCTCC 1 cut(s) 465
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 536
MaeII ACGT 7 cut(s) 78, 228, 258, 297, 384, 408, 453
MaeIII GTNAC 3 cut(s) 247, 505, 611
MalI GATC 3 cut(s) 186, 200, 278
MboI GATC 3 cut(s) 184, 198, 276
MboII GAAGA 4 cut(s) 81, 122, 361, 532
MfeI CAATTG 1 cut(s) 616
MhlI GDGCHC 2 cut(s) 234, 462
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 2 cut(s) 576, 616
MluNI TGGCCA 1 cut(s) 479
MmeI TCCRAC 2 cut(s) 418, 474
Mox20I TGGCCA 1 cut(s) 479
MroI TCCGGA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 479
MslI CAYNNNNRTG 2 cut(s) 257, 269
Msp20I TGGCCA 1 cut(s) 479
MspI CCGG 3 cut(s) 238, 286, 517
MspR9I CCNGG 2 cut(s) 238, 518
MunI CAATTG 1 cut(s) 616
MvnI CGCG 2 cut(s) 244, 246
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 2 cut(s) 238, 518
NdeII GATC 3 cut(s) 184, 198, 276
NlaIII CATG 2 cut(s) 268, 592
NlaIV GGNNCC 2 cut(s) 371, 492
NmeAIII GCCGAG 2 cut(s) 442, 507
NmuCI GTSAC 1 cut(s) 611
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 414
PfeI GAWTC 1 cut(s) 595
Pfl23II CGTACG 2 cut(s) 202, 405
PkrI GCNGC 2 cut(s) 119, 243
PmaCI CACGTG 1 cut(s) 229
PmlI CACGTG 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 229
Psp1406I AACGTT 1 cut(s) 78
PspCI CACGTG 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 355
PspLI CGTACG 2 cut(s) 202, 405
PspN4I GGNNCC 2 cut(s) 371, 492
PspPI GGNCC 3 cut(s) 177, 283, 514
RsaI GTAC 3 cut(s) 204, 341, 407
RsaNI GTAC 3 cut(s) 203, 340, 406
RseI CAYNNNNRTG 2 cut(s) 257, 269
SatI GCNGC 2 cut(s) 118, 242
Sau3AI GATC 3 cut(s) 184, 198, 276
Sau96I GGNCC 3 cut(s) 177, 283, 514
ScrFI CCNGG 2 cut(s) 238, 518
SduI GDGCHC 2 cut(s) 234, 462
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 2 cut(s) 283, 514
SmiMI CAYNNNNRTG 2 cut(s) 257, 269
SmlI CTYRAG 2 cut(s) 209, 215
SmoI CTYRAG 2 cut(s) 209, 215
Sse9I AATT 2 cut(s) 576, 616
SsiI CCGC 4 cut(s) 118, 242, 269, 556
SspI AATATT 1 cut(s) 606
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 236, 516
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 3 cut(s) 139, 490, 505
TaiI ACGT 7 cut(s) 81, 231, 261, 300, 387, 411, 456
TaqI TCGA 2 cut(s) 255, 305
TasI AATT 2 cut(s) 576, 616
TauI GCSGC 2 cut(s) 120, 244
TfiI GAWTC 1 cut(s) 595
TscAI CASTG 2 cut(s) 142, 508
TseFI GTSAC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 2 cut(s) 81, 608
TspGWI ACGGA 2 cut(s) 181, 524
TspRI CASTG 2 cut(s) 142, 508
VneI GTGCAC 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 283, 514
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 576
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.