RchiOBHm_Chr2g0137941

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014261
Physical Location & Seq
Reverse (-)
55757585 .. 55760398
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50865

Sequence Viewer

Length: 795 bp
ATGATGAATTTATGTAGGAATATCTTAAAAGTAATAATATATGAAATAACCACGAAGCAACCAGCATCCAAACAAAAACCTCAAAAGAGCAACCAAACAAAACCCCAAACCCATACACGAAGCAGCTCCATCCCTACTCCTAGTTCCACTACCACAGAGCACATGGCTCCCTCCAAAACCCGACCACCACCACCAGAGCACCACCCCTACATCCCATTAGCCCACGACCAAAGCGACAACGTTCTACCATCTTCTTACTCCTCCCAGCTCCCACAACGCAGCACAACCATTCTTCTCACTCTTCTCCTCCTCCTCCTATCTTCCTCCCTCTACGTCTTCTGGCCCTCCGATCCCTCCCTCAAGATCGTACGGCTCAAGCTGAAGAGAGTCCACGTGCACACCCGGCCGCGCGTGACCATCGACCTGTGCATGGCAGTGAGGATCAAGGTCCGGAACGGCGACGTTTACTCGATGGACTACGATGCGCTGGAGGTCGGGGTTGGCTACAGAGGGAAGAGGCTGGGCCAGGTGAGGTTCCAGCAGGGACACGTGAGGGCTTTTGGGTCATCTTACGTTGACGCTGAGGTGGAGTTCAATGGGGTCGGAGTGTTTTCGGACGTGGTGCTCCTTCTGGAGGACTTGGCCAAGGGAGCCGTACCGTTTGACACTGTTACGGAGGTCCGGGGGAGGCTCGGCGTCCTAGTCTTCCACTTCCCTTTGCAGGCAAGAGTATCGTGTGAAGTTTTGGTAAACATGGTGAATCAAACAATTTTTCGTCACAAATGTTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

264

Amino Acids

29.75

Weight (kDa)

9.62

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 148 - 244 9.4e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 409, 411
AccIII TCCGGA 1 cut(s) 450
AciI CCGC 1 cut(s) 407
AclI AACGTT 1 cut(s) 240
AclWI GGATC 2 cut(s) 344, 449
AcoI YGGCCR 2 cut(s) 404, 642
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 401
AcvI CACGTG 2 cut(s) 394, 550
AcyI GRCGYC 1 cut(s) 696
AfaI GTAC 2 cut(s) 369, 657
AfiI CCNNNNNNNGG 3 cut(s) 430, 634, 721
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 1 cut(s) 595
AjiI CACGTC 1 cut(s) 619
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 3 cut(s) 126, 268, 379
AluI AGCT 3 cut(s) 126, 268, 379
Alw21I GWGCWC 4 cut(s) 162, 201, 399, 627
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 2 cut(s) 344, 449
Aor13HI TCCGGA 1 cut(s) 450
AoxI GGCC 4 cut(s) 341, 404, 523, 642
ApaLI GTGCAC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 123, 279
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 2 cut(s) 411, 487
AspS9I GGNCC 4 cut(s) 342, 448, 523, 679
AsuC2I CCSGG 2 cut(s) 403, 683
AsuHPI GGTGA 2 cut(s) 541, 769
AvaII GGWCC 2 cut(s) 448, 679
BaeGI GKGCMC 1 cut(s) 399
BalI TGGCCA 1 cut(s) 644
BbrPI CACGTG 2 cut(s) 394, 550
BbsI GAAGAC 2 cut(s) 328, 697
Bbv12I GWGCWC 4 cut(s) 162, 201, 399, 627
BbvCI CCTCAGC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 135, 291
BccI CCATC 4 cut(s) 137, 256, 425, 466
BceAI ACGGC 3 cut(s) 386, 472, 638
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BciT130I CCWGG 1 cut(s) 527
BcnI CCSGG 2 cut(s) 403, 683
BfaI CTAG 2 cut(s) 141, 701
BfmI CTRYAG 1 cut(s) 505
BisI GCNGC 3 cut(s) 124, 280, 407
BlsI GCNGC 3 cut(s) 125, 281, 408
Bme1390I CCNGG 3 cut(s) 403, 527, 683
Bme18I GGWCC 2 cut(s) 448, 679
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 4 cut(s) 342, 448, 523, 679
BmiI GGNNCC 3 cut(s) 168, 536, 652
BmrFI CCNGG 3 cut(s) 403, 527, 683
BmsI GCATC 2 cut(s) 74, 472
BpiI GAAGAC 2 cut(s) 328, 697
BpmI CTGGAG 2 cut(s) 509, 653
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 2 cut(s) 344, 359
BpuMI CCSGG 2 cut(s) 403, 683
BsaAI YACGTR 2 cut(s) 394, 550
BsaHI GRCGYC 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 645, 682
BsaWI WCCGGW 1 cut(s) 450
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 634, 721
BseAI TCCGGA 1 cut(s) 450
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 2 cut(s) 645, 682
BseGI GGATG 3 cut(s) 65, 129, 210
BseLI CCNNNNNNNGG 3 cut(s) 430, 634, 721
BseMII CTCAG 1 cut(s) 573
BseRI GAGGAG 4 cut(s) 250, 296, 299, 302
BseSI GKGCMC 1 cut(s) 399
BseX3I CGGCCG 1 cut(s) 404
BseXI GCAGC 2 cut(s) 135, 291
BseYI CCCAGC 2 cut(s) 264, 520
Bsh1236I CGCG 2 cut(s) 409, 411
Bsh1285I CGRYCG 1 cut(s) 407
BshFI GGCC 4 cut(s) 343, 406, 525, 644
BsiEI CGRYCG 1 cut(s) 407
BsiHKAI GWGCWC 4 cut(s) 162, 201, 399, 627
BsiSI CCGG 3 cut(s) 403, 451, 682
BsiWI CGTACG 1 cut(s) 367
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 3 cut(s) 430, 634, 721
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 4 cut(s) 343, 406, 525, 644
Bsp1286I GDGCHC 4 cut(s) 162, 201, 399, 627
Bsp13I TCCGGA 1 cut(s) 450
Bsp143I GATC 3 cut(s) 349, 363, 441
BspACI CCGC 1 cut(s) 407
BspANI GGCC 4 cut(s) 343, 406, 525, 644
BspCNI CTCAG 1 cut(s) 574
BspEI TCCGGA 1 cut(s) 450
BspFNI CGCG 2 cut(s) 409, 411
BspLI GGNNCC 3 cut(s) 168, 536, 652
BspPI GGATC 2 cut(s) 344, 449
BssECI CCNNGG 2 cut(s) 645, 682
BssMI GATC 3 cut(s) 349, 363, 441
BssNI GRCGYC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 2 cut(s) 660, 670
Bst6I CTCTTC 3 cut(s) 306, 377, 509
BstACI GRCGYC 1 cut(s) 696
BstBAI YACGTR 2 cut(s) 394, 550
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 1 cut(s) 582
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 3 cut(s) 65, 129, 210
BstFNI CGCG 2 cut(s) 409, 411
BstHHI GCGC 2 cut(s) 411, 487
BstKTI GATC 3 cut(s) 352, 366, 444
BstMBI GATC 3 cut(s) 349, 363, 441
BstMCI CGRYCG 1 cut(s) 407
BstMWI GCNNNNNNNGC 2 cut(s) 403, 650
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 3 cut(s) 401, 525, 681
BstSFI CTRYAG 1 cut(s) 505
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 2 cut(s) 409, 411
BstV1I GCAGC 2 cut(s) 135, 291
BstV2I GAAGAC 2 cut(s) 328, 697
BstZI CGGCCG 1 cut(s) 404
BsuRI GGCC 4 cut(s) 343, 406, 525, 644
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 3 cut(s) 65, 129, 210
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 441, 666
Cac8I GCNNGC 1 cut(s) 723
CfoI GCGC 2 cut(s) 411, 487
Cfr13I GGNCC 4 cut(s) 342, 448, 523, 679
CseI GACGC 2 cut(s) 587, 685
Csp6I GTAC 2 cut(s) 368, 656
CviAII CATG 3 cut(s) 163, 430, 754
CviQI GTAC 2 cut(s) 368, 656
DdeI CTNAG 1 cut(s) 582
DpnI GATC 3 cut(s) 351, 365, 443
DpnII GATC 3 cut(s) 349, 363, 441
EaeI YGGCCR 2 cut(s) 404, 642
EagI CGGCCG 1 cut(s) 404
Eam1104I CTCTTC 3 cut(s) 306, 377, 509
EarI CTCTTC 3 cut(s) 306, 377, 509
EclXI CGGCCG 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 448, 679
Eco52I CGGCCG 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 401
Eco72I CACGTG 2 cut(s) 394, 550
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 3 cut(s) 166, 433, 757
FaiI YATR 8 cut(s) 13, 40, 42, 114, 164, 431, 755, 789
FaqI GGGAC 1 cut(s) 558
FatI CATG 3 cut(s) 162, 429, 753
Fnu4HI GCNGC 3 cut(s) 124, 280, 407
FokI GGATG 3 cut(s) 52, 116, 197
Fsp4HI GCNGC 3 cut(s) 124, 280, 407
FspBI CTAG 2 cut(s) 141, 701
GlaI GCGC 2 cut(s) 410, 486
GluI GCNGC 3 cut(s) 124, 280, 407
GsaI CCCAGC 2 cut(s) 268, 524
GsuI CTGGAG 2 cut(s) 509, 653
HaeIII GGCC 4 cut(s) 343, 406, 525, 644
HapII CCGG 3 cut(s) 403, 451, 682
HgaI GACGC 2 cut(s) 587, 685
HhaI GCGC 2 cut(s) 411, 487
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 3 cut(s) 166, 433, 757
Hin6I GCGC 2 cut(s) 409, 485
HinP1I GCGC 2 cut(s) 409, 485
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 2 cut(s) 387, 760
HpaII CCGG 3 cut(s) 403, 451, 682
HphI GGTGA 2 cut(s) 541, 769
Hpy166II GTNNAC 5 cut(s) 391, 397, 466, 577, 751
Hpy188I TCNGA 3 cut(s) 349, 605, 616
Hpy188III TCNNGA 3 cut(s) 361, 451, 632
Hpy8I GTNNAC 5 cut(s) 391, 397, 466, 577, 751
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 638
HpyCH4III ACNGT 2 cut(s) 660, 670
HpyCH4IV ACGT 7 cut(s) 240, 333, 393, 462, 549, 573, 618
HpyCH4V TGCA 3 cut(s) 397, 429, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 403, 650
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 7 cut(s) 240, 333, 393, 462, 549, 573, 618
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 3 cut(s) 166, 433, 757
HspAI GCGC 2 cut(s) 409, 485
Kpn2I TCCGGA 1 cut(s) 450
Kzo9I GATC 3 cut(s) 349, 363, 441
LmnI GCTCC 5 cut(s) 131, 172, 273, 630, 650
Lsp1109I GCAGC 2 cut(s) 135, 291
LweI GCATC 2 cut(s) 74, 472
MaeI CTAG 2 cut(s) 141, 701
MaeII ACGT 7 cut(s) 240, 333, 393, 462, 549, 573, 618
MaeIII GTNAC 3 cut(s) 412, 670, 776
MalI GATC 3 cut(s) 351, 365, 443
MboI GATC 3 cut(s) 349, 363, 441
MboII GAAGA 8 cut(s) 243, 284, 293, 312, 328, 394, 526, 697
MhlI GDGCHC 4 cut(s) 162, 201, 399, 627
MlsI TGGCCA 1 cut(s) 644
MluCI AATT 2 cut(s) 7, 768
MluNI TGGCCA 1 cut(s) 644
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 583
Mox20I TGGCCA 1 cut(s) 644
MroI TCCGGA 1 cut(s) 450
MscI TGGCCA 1 cut(s) 644
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 644
MspI CCGG 3 cut(s) 403, 451, 682
MspR9I CCNGG 3 cut(s) 403, 527, 683
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 2 cut(s) 409, 411
MwoI GCNNNNNNNGC 2 cut(s) 403, 650
NciI CCSGG 2 cut(s) 403, 683
NdeII GATC 3 cut(s) 349, 363, 441
NlaIII CATG 3 cut(s) 166, 433, 757
NlaIV GGNNCC 3 cut(s) 168, 536, 652
NmeAIII GCCGAG 1 cut(s) 672
NmuCI GTSAC 2 cut(s) 412, 776
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfeI GAWTC 1 cut(s) 760
Pfl23II CGTACG 1 cut(s) 367
PkrI GCNGC 3 cut(s) 125, 281, 408
PleI GAGTC 1 cut(s) 395
PmaCI CACGTG 2 cut(s) 394, 550
PmlI CACGTG 2 cut(s) 394, 550
PpsI GAGTC 1 cut(s) 395
Ppu21I YACGTR 2 cut(s) 394, 550
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 525
PspCI CACGTG 2 cut(s) 394, 550
PspFI CCCAGC 2 cut(s) 264, 520
PspGI CCWGG 1 cut(s) 525
PspLI CGTACG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 168, 536, 652
PspPI GGNCC 4 cut(s) 342, 448, 523, 679
RsaI GTAC 2 cut(s) 369, 657
RsaNI GTAC 2 cut(s) 368, 656
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 3 cut(s) 124, 280, 407
Sau3AI GATC 3 cut(s) 349, 363, 441
Sau96I GGNCC 4 cut(s) 342, 448, 523, 679
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 3 cut(s) 403, 527, 683
SduI GDGCHC 4 cut(s) 162, 201, 399, 627
SfaNI GCATC 2 cut(s) 74, 472
SfcI CTRYAG 1 cut(s) 505
SinI GGWCC 2 cut(s) 448, 679
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 359, 374
SmoI CTYRAG 2 cut(s) 359, 374
Sse9I AATT 2 cut(s) 7, 768
SsiI CCGC 1 cut(s) 407
SspMI CTAG 2 cut(s) 141, 701
StyD4I CCNGG 3 cut(s) 401, 525, 681
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 660, 670
TaiI ACGT 7 cut(s) 243, 336, 396, 465, 552, 576, 621
TaqI TCGA 2 cut(s) 420, 470
TasI AATT 2 cut(s) 7, 768
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 1 cut(s) 760
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 2 cut(s) 441, 673
TseFI GTSAC 2 cut(s) 412, 776
TseI GCWGC 2 cut(s) 123, 279
Tsp45I GTSAC 2 cut(s) 412, 776
TspDTI ATGAA 2 cut(s) 20, 57
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 2 cut(s) 441, 673
VneI GTGCAC 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 448, 679
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 2 cut(s) 141, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.