Rw2G032280

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014261
Physical Location & Seq
Reverse (-)
53187558 .. 53189198
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032280.1

Sequence Viewer

Length: 633 bp
ATGGCTCCCTCCAAAACCCGACCACCACCACCAGAGCACCACCCCTACATCCCATTAGCCCACGACCAAAGCGACAACGTTCTACCATCTTCTTACTCCTCCCAGCTCCCACAACGCAGCACAACCATTCTTCTCACTCTTCTCCTCCTCCTCCTATCTTCCTCCCTCTACGTCTTCTGGCCCTCCGATCCCTCCCTCAAGATCGTACGGCTCAAGCTGAAGAGAGTCCACGTGCACACCCGGCCGCGCGTGACCATCGACCTGTGCATGGCAGTGAGGATCAAGGTCCGGAACGGCGACGTTTACTCGATGGACTACGATGCGCTGGAGGTCGGGGTTGGCTACAGAGGGAAGAGGCTGGGCCAGGTGAGGTTCCAGCAGGGACACGTGAGGGCTTTTGGGTCATCTTACGTTGACGCTGAGGTGGAGTTCAATGGGGTCGGAGTGTTTTCGGACGTGGTGCTCCTTCTGGAGGACTTGGCCAAGGGAGCCGTACCGTTTGACACTGTTACGGAGGTCCGGGGGAGGCTCGGCGTCCTAGTCTTCCACTTCCCTTTGCAGGCAAGAGTATCGTGTGAAGTTTTGGTAAACATGGTGAATCAAACAATTTTTCGTCACAAATGTTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

210

Amino Acids

23.66

Weight (kDa)

9.19

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 94 - 190 5.5e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 247, 249
AccIII TCCGGA 1 cut(s) 288
AciI CCGC 1 cut(s) 245
AclI AACGTT 1 cut(s) 78
AclWI GGATC 2 cut(s) 182, 287
AcoI YGGCCR 2 cut(s) 242, 480
AcuI CTGAAG 1 cut(s) 239
AcvI CACGTG 2 cut(s) 232, 388
AcyI GRCGYC 1 cut(s) 534
AfaI GTAC 2 cut(s) 207, 495
AfiI CCNNNNNNNGG 3 cut(s) 268, 472, 559
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 1 cut(s) 433
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 2 cut(s) 106, 217
AluI AGCT 2 cut(s) 106, 217
Alw21I GWGCWC 3 cut(s) 39, 237, 465
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 2 cut(s) 182, 287
Aor13HI TCCGGA 1 cut(s) 288
AoxI GGCC 4 cut(s) 179, 242, 361, 480
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 117
AspLEI GCGC 2 cut(s) 249, 325
AspS9I GGNCC 4 cut(s) 180, 286, 361, 517
AsuC2I CCSGG 2 cut(s) 241, 521
AsuHPI GGTGA 2 cut(s) 379, 607
AvaII GGWCC 2 cut(s) 286, 517
BaeGI GKGCMC 1 cut(s) 237
BalI TGGCCA 1 cut(s) 482
BbrPI CACGTG 2 cut(s) 232, 388
BbsI GAAGAC 2 cut(s) 166, 535
Bbv12I GWGCWC 3 cut(s) 39, 237, 465
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 94, 263, 304
BceAI ACGGC 3 cut(s) 224, 310, 476
BcgI CGANNNNNNTGC 2 cut(s) 552, 586
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 2 cut(s) 241, 521
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 343
BisI GCNGC 2 cut(s) 118, 245
BlsI GCNGC 2 cut(s) 119, 246
Bme1390I CCNGG 3 cut(s) 241, 365, 521
Bme18I GGWCC 2 cut(s) 286, 517
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 180, 286, 361, 517
BmiI GGNNCC 3 cut(s) 6, 374, 490
BmrFI CCNGG 3 cut(s) 241, 365, 521
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 2 cut(s) 166, 535
BpmI CTGGAG 2 cut(s) 347, 491
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 2 cut(s) 182, 197
BpuMI CCSGG 2 cut(s) 241, 521
BsaAI YACGTR 2 cut(s) 232, 388
BsaHI GRCGYC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 483, 520
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 472, 559
BseAI TCCGGA 1 cut(s) 288
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 483, 520
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 3 cut(s) 268, 472, 559
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 4 cut(s) 88, 134, 137, 140
BseSI GKGCMC 1 cut(s) 237
BseX3I CGGCCG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 129
BseYI CCCAGC 2 cut(s) 102, 358
Bsh1236I CGCG 2 cut(s) 247, 249
Bsh1285I CGRYCG 1 cut(s) 245
BshFI GGCC 4 cut(s) 181, 244, 363, 482
BsiEI CGRYCG 1 cut(s) 245
BsiHKAI GWGCWC 3 cut(s) 39, 237, 465
BsiSI CCGG 3 cut(s) 241, 289, 520
BsiWI CGTACG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 268, 472, 559
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 4 cut(s) 181, 244, 363, 482
Bsp1286I GDGCHC 3 cut(s) 39, 237, 465
Bsp13I TCCGGA 1 cut(s) 288
Bsp143I GATC 3 cut(s) 187, 201, 279
BspACI CCGC 1 cut(s) 245
BspANI GGCC 4 cut(s) 181, 244, 363, 482
BspCNI CTCAG 1 cut(s) 412
BspEI TCCGGA 1 cut(s) 288
BspFNI CGCG 2 cut(s) 247, 249
BspLI GGNNCC 3 cut(s) 6, 374, 490
BspPI GGATC 2 cut(s) 182, 287
BssECI CCNNGG 2 cut(s) 483, 520
BssMI GATC 3 cut(s) 187, 201, 279
BssNI GRCGYC 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 498, 508
Bst6I CTCTTC 3 cut(s) 144, 215, 347
BstACI GRCGYC 1 cut(s) 534
BstBAI YACGTR 2 cut(s) 232, 388
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 1 cut(s) 420
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 2 cut(s) 247, 249
BstHHI GCGC 2 cut(s) 249, 325
BstKTI GATC 3 cut(s) 190, 204, 282
BstMBI GATC 3 cut(s) 187, 201, 279
BstMCI CGRYCG 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 241, 488
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 239, 363, 519
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 2 cut(s) 247, 249
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 2 cut(s) 166, 535
BstZI CGGCCG 1 cut(s) 242
BsuRI GGCC 4 cut(s) 181, 244, 363, 482
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 279, 504
Cac8I GCNNGC 1 cut(s) 561
CfoI GCGC 2 cut(s) 249, 325
Cfr13I GGNCC 4 cut(s) 180, 286, 361, 517
CseI GACGC 2 cut(s) 425, 523
Csp6I GTAC 2 cut(s) 206, 494
CviAII CATG 2 cut(s) 268, 592
CviQI GTAC 2 cut(s) 206, 494
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 189, 203, 281
DpnII GATC 3 cut(s) 187, 201, 279
EaeI YGGCCR 2 cut(s) 242, 480
EagI CGGCCG 1 cut(s) 242
Eam1104I CTCTTC 3 cut(s) 144, 215, 347
EarI CTCTTC 3 cut(s) 144, 215, 347
EclXI CGGCCG 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 286, 517
Eco52I CGGCCG 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 239
Eco72I CACGTG 2 cut(s) 232, 388
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 2 cut(s) 271, 595
FaiI YATR 3 cut(s) 269, 593, 627
FaqI GGGAC 1 cut(s) 396
FatI CATG 2 cut(s) 267, 591
Fnu4HI GCNGC 2 cut(s) 118, 245
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 118, 245
FspBI CTAG 1 cut(s) 539
GlaI GCGC 2 cut(s) 248, 324
GluI GCNGC 2 cut(s) 118, 245
GsaI CCCAGC 2 cut(s) 106, 362
GsuI CTGGAG 2 cut(s) 347, 491
HaeIII GGCC 4 cut(s) 181, 244, 363, 482
HapII CCGG 3 cut(s) 241, 289, 520
HgaI GACGC 2 cut(s) 425, 523
HhaI GCGC 2 cut(s) 249, 325
Hin1I GRCGYC 1 cut(s) 534
Hin1II CATG 2 cut(s) 271, 595
Hin6I GCGC 2 cut(s) 247, 323
HinP1I GCGC 2 cut(s) 247, 323
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 225, 598
HpaII CCGG 3 cut(s) 241, 289, 520
HphI GGTGA 2 cut(s) 379, 607
Hpy166II GTNNAC 5 cut(s) 229, 235, 304, 415, 589
Hpy188I TCNGA 3 cut(s) 187, 443, 454
Hpy188III TCNNGA 3 cut(s) 199, 289, 470
Hpy8I GTNNAC 5 cut(s) 229, 235, 304, 415, 589
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 2 cut(s) 498, 508
HpyCH4IV ACGT 7 cut(s) 78, 171, 231, 300, 387, 411, 456
HpyCH4V TGCA 3 cut(s) 235, 267, 559
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 488
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 7 cut(s) 78, 171, 231, 300, 387, 411, 456
Hsp92I GRCGYC 1 cut(s) 534
Hsp92II CATG 2 cut(s) 271, 595
HspAI GCGC 2 cut(s) 247, 323
Kpn2I TCCGGA 1 cut(s) 288
Kzo9I GATC 3 cut(s) 187, 201, 279
LmnI GCTCC 4 cut(s) 10, 111, 468, 488
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 539
MaeII ACGT 7 cut(s) 78, 171, 231, 300, 387, 411, 456
MaeIII GTNAC 3 cut(s) 250, 508, 614
MalI GATC 3 cut(s) 189, 203, 281
MboI GATC 3 cut(s) 187, 201, 279
MboII GAAGA 8 cut(s) 81, 122, 131, 150, 166, 232, 364, 535
MhlI GDGCHC 3 cut(s) 39, 237, 465
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 421
Mox20I TGGCCA 1 cut(s) 482
MroI TCCGGA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 482
MspI CCGG 3 cut(s) 241, 289, 520
MspR9I CCNGG 3 cut(s) 241, 365, 521
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 2 cut(s) 247, 249
MwoI GCNNNNNNNGC 2 cut(s) 241, 488
NciI CCSGG 2 cut(s) 241, 521
NdeII GATC 3 cut(s) 187, 201, 279
NlaIII CATG 2 cut(s) 271, 595
NlaIV GGNNCC 3 cut(s) 6, 374, 490
NmeAIII GCCGAG 1 cut(s) 510
NmuCI GTSAC 2 cut(s) 250, 614
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 1 cut(s) 598
Pfl23II CGTACG 1 cut(s) 205
PkrI GCNGC 2 cut(s) 119, 246
PleI GAGTC 1 cut(s) 233
PmaCI CACGTG 2 cut(s) 232, 388
PmlI CACGTG 2 cut(s) 232, 388
PpsI GAGTC 1 cut(s) 233
Ppu21I YACGTR 2 cut(s) 232, 388
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 363
PspCI CACGTG 2 cut(s) 232, 388
PspFI CCCAGC 2 cut(s) 102, 358
PspGI CCWGG 1 cut(s) 363
PspLI CGTACG 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 6, 374, 490
PspPI GGNCC 4 cut(s) 180, 286, 361, 517
RsaI GTAC 2 cut(s) 207, 495
RsaNI GTAC 2 cut(s) 206, 494
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 2 cut(s) 118, 245
Sau3AI GATC 3 cut(s) 187, 201, 279
Sau96I GGNCC 4 cut(s) 180, 286, 361, 517
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 241, 365, 521
SduI GDGCHC 3 cut(s) 39, 237, 465
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 2 cut(s) 286, 517
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 197, 212
SmoI CTYRAG 2 cut(s) 197, 212
Sse9I AATT 1 cut(s) 606
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 3 cut(s) 239, 363, 519
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 498, 508
TaiI ACGT 7 cut(s) 81, 174, 234, 303, 390, 414, 459
TaqI TCGA 2 cut(s) 258, 308
TasI AATT 1 cut(s) 606
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 1 cut(s) 598
TscAI CASTG 2 cut(s) 279, 511
TseFI GTSAC 2 cut(s) 250, 614
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 2 cut(s) 250, 614
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 279, 511
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 286, 517
XagI CCTNNNNNAGG 1 cut(s) 470
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.