RLG00000019692

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014261
Physical Location & Seq
Reverse (-)
55520882 .. 55522219
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019692

Sequence Viewer

Length: 633 bp
ATGGCTCCCTCCAAAACCCAACGACCACCACCAGAGCACCACCCCTACATCCCATTACCCCAAGACCAAAGCGACAACGTTCTACCATCTTCTTACTGCTCCCAGCTCCCACAACGCAGCACAACCATTCTTCTCACTCTTCTCCTCCTCCTCCTATCTTCCTCCCTCTACGTCTTCTGGCCCTCCGATCCCTCCCTCAAGATCGTACGGCTCAAGCTGAAGAGAGTCCACGTGCACACCCGGCCGCGCGTGACCATCGACCTGTGCTTGGCAGTGAGGATCAAGGTCCGGAACGGCGACGTGTACTCGATGGACTACGATGCGCTGGAGGTCGGGGTTGGCTACAGAGGGAAGAGGCTAGGTCAGGTGAGGTTCCAGCAGGGACACGTGAGGGCCTTTGGGTCATCTTACGTTGACGCCGAGGTGGAGTTCAATGGGGTCGGAGTGTTTTCCGACGTGGTGCTCCTGCTGGAGGACTTGGCCAAGGGAACCGTACCGTTTGACACTGTTACGGAGGTCCGGGGGAAGCTCGGCGTCCTAGTCTTCCACTTCCCTCTGCAGGTAAGAGTATCGTGTGAAGTTTTGGTAAACATGGTGACTCAAACAATTTTTCGTCACAAATGTTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

211

Amino Acids

23.72

Weight (kDa)

9.08

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 94 - 192 1.5e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 550
AccII CGCG 2 cut(s) 247, 249
AccIII TCCGGA 1 cut(s) 288
AciI CCGC 1 cut(s) 245
AclI AACGTT 1 cut(s) 78
AclWI GGATC 2 cut(s) 182, 287
AcoI YGGCCR 2 cut(s) 242, 480
AcuI CTGAAG 1 cut(s) 239
AcvI CACGTG 2 cut(s) 232, 388
AcyI GRCGYC 2 cut(s) 417, 534
AfaI GTAC 3 cut(s) 207, 305, 495
AfiI CCNNNNNNNGG 3 cut(s) 268, 472, 559
AflIII ACRYGT 2 cut(s) 300, 385
AgsI TTSAA 1 cut(s) 433
AjiI CACGTC 2 cut(s) 301, 457
AluBI AGCT 3 cut(s) 106, 217, 529
AluI AGCT 3 cut(s) 106, 217, 529
Alw21I GWGCWC 3 cut(s) 39, 237, 465
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 2 cut(s) 182, 287
Aor13HI TCCGGA 1 cut(s) 288
AoxI GGCC 4 cut(s) 179, 242, 393, 480
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 117
AspLEI GCGC 2 cut(s) 249, 325
AspS9I GGNCC 4 cut(s) 180, 286, 393, 517
AsuC2I CCSGG 2 cut(s) 241, 521
AsuHPI GGTGA 2 cut(s) 379, 607
AvaII GGWCC 2 cut(s) 286, 517
BaeGI GKGCMC 1 cut(s) 237
BalI TGGCCA 1 cut(s) 482
BbrPI CACGTG 2 cut(s) 232, 388
BbsI GAAGAC 2 cut(s) 166, 535
Bbv12I GWGCWC 3 cut(s) 39, 237, 465
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 94, 263, 304
BceAI ACGGC 2 cut(s) 224, 310
BcnI CCSGG 2 cut(s) 241, 521
BfaI CTAG 2 cut(s) 359, 539
BfmI CTRYAG 2 cut(s) 343, 557
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 2 cut(s) 118, 245
BlsI GCNGC 2 cut(s) 119, 246
Bme1390I CCNGG 2 cut(s) 241, 521
Bme18I GGWCC 2 cut(s) 286, 517
BmgBI CACGTC 2 cut(s) 301, 457
BmgT120I GGNCC 4 cut(s) 180, 286, 393, 517
BmiI GGNNCC 3 cut(s) 6, 374, 490
BmrFI CCNGG 2 cut(s) 241, 521
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 2 cut(s) 166, 535
BpmI CTGGAG 2 cut(s) 347, 491
BpuEI CTTGAG 2 cut(s) 182, 197
BpuMI CCSGG 2 cut(s) 241, 521
BsaAI YACGTR 2 cut(s) 232, 388
BsaHI GRCGYC 2 cut(s) 417, 534
BsaJI CCNNGG 3 cut(s) 420, 483, 520
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 472, 559
BseAI TCCGGA 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 420, 483, 520
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 3 cut(s) 268, 472, 559
BseRI GAGGAG 3 cut(s) 134, 137, 140
BseSI GKGCMC 1 cut(s) 237
BseX3I CGGCCG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 129
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 2 cut(s) 247, 249
Bsh1285I CGRYCG 1 cut(s) 245
BshFI GGCC 4 cut(s) 181, 244, 395, 482
BsiEI CGRYCG 1 cut(s) 245
BsiHKAI GWGCWC 3 cut(s) 39, 237, 465
BsiSI CCGG 3 cut(s) 241, 289, 520
BsiWI CGTACG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 268, 472, 559
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 4 cut(s) 181, 244, 395, 482
Bsp1286I GDGCHC 3 cut(s) 39, 237, 465
Bsp13I TCCGGA 1 cut(s) 288
Bsp143I GATC 3 cut(s) 187, 201, 279
BspACI CCGC 1 cut(s) 245
BspANI GGCC 4 cut(s) 181, 244, 395, 482
BspEI TCCGGA 1 cut(s) 288
BspFNI CGCG 2 cut(s) 247, 249
BspLI GGNNCC 3 cut(s) 6, 374, 490
BspMAI CTGCAG 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 2 cut(s) 182, 287
BssECI CCNNGG 3 cut(s) 420, 483, 520
BssMI GATC 3 cut(s) 187, 201, 279
BssNI GRCGYC 2 cut(s) 417, 534
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 493, 498, 508
Bst6I CTCTTC 3 cut(s) 144, 215, 347
BstACI GRCGYC 2 cut(s) 417, 534
BstBAI YACGTR 2 cut(s) 232, 388
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 2 cut(s) 247, 249
BstHHI GCGC 2 cut(s) 249, 325
BstKTI GATC 3 cut(s) 190, 204, 282
BstMBI GATC 3 cut(s) 187, 201, 279
BstMCI CGRYCG 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 239, 519
BstSFI CTRYAG 2 cut(s) 343, 557
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 2 cut(s) 247, 249
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 2 cut(s) 166, 535
BstZI CGGCCG 1 cut(s) 242
BsuRI GGCC 4 cut(s) 181, 244, 395, 482
BtrI CACGTC 2 cut(s) 301, 457
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 279, 504
BveI ACCTGC 1 cut(s) 550
CfoI GCGC 2 cut(s) 249, 325
Cfr13I GGNCC 4 cut(s) 180, 286, 393, 517
CseI GACGC 2 cut(s) 425, 523
Csp6I GTAC 3 cut(s) 206, 304, 494
CviAII CATG 1 cut(s) 592
CviQI GTAC 3 cut(s) 206, 304, 494
DpnI GATC 3 cut(s) 189, 203, 281
DpnII GATC 3 cut(s) 187, 201, 279
EaeI YGGCCR 2 cut(s) 242, 480
EagI CGGCCG 1 cut(s) 242
Eam1104I CTCTTC 3 cut(s) 144, 215, 347
EarI CTCTTC 3 cut(s) 144, 215, 347
EclXI CGGCCG 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 286, 517
Eco52I CGGCCG 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 239
Eco72I CACGTG 2 cut(s) 232, 388
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 1 cut(s) 595
FaiI YATR 2 cut(s) 593, 627
FaqI GGGAC 1 cut(s) 396
FatI CATG 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 118, 245
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 118, 245
FspBI CTAG 2 cut(s) 359, 539
GlaI GCGC 2 cut(s) 248, 324
GluI GCNGC 2 cut(s) 118, 245
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 2 cut(s) 347, 491
HaeIII GGCC 4 cut(s) 181, 244, 395, 482
HapII CCGG 3 cut(s) 241, 289, 520
HgaI GACGC 2 cut(s) 425, 523
HhaI GCGC 2 cut(s) 249, 325
Hin1I GRCGYC 2 cut(s) 417, 534
Hin1II CATG 1 cut(s) 595
Hin6I GCGC 2 cut(s) 247, 323
HinP1I GCGC 2 cut(s) 247, 323
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 225, 598
HpaII CCGG 3 cut(s) 241, 289, 520
HphI GGTGA 2 cut(s) 379, 607
Hpy166II GTNNAC 5 cut(s) 229, 235, 304, 415, 589
Hpy188I TCNGA 3 cut(s) 187, 443, 454
Hpy188III TCNNGA 2 cut(s) 199, 289
Hpy8I GTNNAC 5 cut(s) 229, 235, 304, 415, 589
Hpy99I CGWCG 2 cut(s) 302, 458
HpyCH4III ACNGT 3 cut(s) 493, 498, 508
HpyCH4IV ACGT 7 cut(s) 78, 171, 231, 300, 387, 411, 456
HpyCH4V TGCA 2 cut(s) 235, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpySE526I ACGT 7 cut(s) 78, 171, 231, 300, 387, 411, 456
Hsp92I GRCGYC 2 cut(s) 417, 534
Hsp92II CATG 1 cut(s) 595
HspAI GCGC 2 cut(s) 247, 323
Kpn2I TCCGGA 1 cut(s) 288
Kzo9I GATC 3 cut(s) 187, 201, 279
LmnI GCTCC 4 cut(s) 10, 104, 111, 468
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 310
MaeI CTAG 2 cut(s) 359, 539
MaeII ACGT 7 cut(s) 78, 171, 231, 300, 387, 411, 456
MaeIII GTNAC 4 cut(s) 250, 508, 595, 614
MalI GATC 3 cut(s) 189, 203, 281
MboI GATC 3 cut(s) 187, 201, 279
MboII GAAGA 8 cut(s) 81, 122, 131, 150, 166, 232, 364, 535
MhlI GDGCHC 3 cut(s) 39, 237, 465
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 2 cut(s) 234, 592
MmeI TCCRAC 2 cut(s) 421, 477
Mox20I TGGCCA 1 cut(s) 482
MroI TCCGGA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 482
Msp20I TGGCCA 1 cut(s) 482
MspI CCGG 3 cut(s) 241, 289, 520
MspR9I CCNGG 2 cut(s) 241, 521
MvnI CGCG 2 cut(s) 247, 249
MwoI GCNNNNNNNGC 1 cut(s) 241
NciI CCSGG 2 cut(s) 241, 521
NdeII GATC 3 cut(s) 187, 201, 279
NlaIII CATG 1 cut(s) 595
NlaIV GGNNCC 3 cut(s) 6, 374, 490
NmeAIII GCCGAG 2 cut(s) 445, 510
NmuCI GTSAC 3 cut(s) 250, 595, 614
PcsI WCGNNNNNNNCGW 1 cut(s) 417
Pfl23II CGTACG 1 cut(s) 205
PkrI GCNGC 2 cut(s) 119, 246
PleI GAGTC 2 cut(s) 233, 592
PmaCI CACGTG 2 cut(s) 232, 388
PmlI CACGTG 2 cut(s) 232, 388
PpsI GAGTC 2 cut(s) 233, 592
Ppu21I YACGTR 2 cut(s) 232, 388
Psp1406I AACGTT 1 cut(s) 78
PspCI CACGTG 2 cut(s) 232, 388
PspFI CCCAGC 1 cut(s) 102
PspLI CGTACG 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 6, 374, 490
PspPI GGNCC 4 cut(s) 180, 286, 393, 517
PstI CTGCAG 1 cut(s) 561
RsaI GTAC 3 cut(s) 207, 305, 495
RsaNI GTAC 3 cut(s) 206, 304, 494
SatI GCNGC 2 cut(s) 118, 245
Sau3AI GATC 3 cut(s) 187, 201, 279
Sau96I GGNCC 4 cut(s) 180, 286, 393, 517
SchI GAGTC 2 cut(s) 234, 592
ScrFI CCNGG 2 cut(s) 241, 521
SduI GDGCHC 3 cut(s) 39, 237, 465
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 2 cut(s) 343, 557
SinI GGWCC 2 cut(s) 286, 517
SmlI CTYRAG 2 cut(s) 197, 212
SmoI CTYRAG 2 cut(s) 197, 212
Sse9I AATT 1 cut(s) 606
SsiI CCGC 1 cut(s) 245
SspMI CTAG 2 cut(s) 359, 539
StyD4I CCNGG 2 cut(s) 239, 519
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 3 cut(s) 493, 498, 508
TaiI ACGT 7 cut(s) 81, 174, 234, 303, 390, 414, 459
TaqI TCGA 2 cut(s) 258, 308
TasI AATT 1 cut(s) 606
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 247
TscAI CASTG 2 cut(s) 279, 511
TseFI GTSAC 3 cut(s) 250, 595, 614
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 3 cut(s) 250, 595, 614
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 279, 511
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 286, 517
XagI CCTNNNNNAGG 1 cut(s) 470
XspI CTAG 2 cut(s) 359, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.