Rmu_sc0002170.1_g000035

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002170.1
OG0014261
Physical Location & Seq
Reverse (-)
147585 .. 148157
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002170.1_g000035.1.cds

Sequence Viewer

Length: 573 bp
atggctccctccaaaacccgaccaccaccaccagagcaccacccctacatcccattagcccacgaccaaagcgacaacgttctaccatcttcttactcctcccagctcccacaacgcagcacaaccattcttctcactcttctcctcctcctcctatcttcctccctctacgtcttctggccctccgatccctccctcaagatcgtacggctcaagctgaagagagtccacgtgcacacccggccgcgcgtgaccatcgacctgtgcatggcagtgaggatcaaggtccggaacggcgacgtttactcgatggactacgatgcgctggaggtcggggttggctacagagggaagaggctgggccaggtgaggttccagcagggacacgtgagggcttttgggtcatcttacgttgacgctgaggtggagttcaatggggtcggagtgttttcggacgtggtgctccttctggaggacttggccaagggagccgtaccgtttgacactgttacggaggtccgggggaggctcggcgtcctagtcttccactttcctttgcaggtacgtacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

190

Amino Acids

21.29

Weight (kDa)

9.47

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 550
AccII CGCG 2 cut(s) 247, 249
AccIII TCCGGA 1 cut(s) 288
AciI CCGC 1 cut(s) 245
AclI AACGTT 1 cut(s) 78
AclWI GGATC 2 cut(s) 182, 287
AcoI YGGCCR 2 cut(s) 242, 480
AcuI CTGAAG 1 cut(s) 239
AcvI CACGTG 2 cut(s) 232, 388
AcyI GRCGYC 1 cut(s) 534
AfaI GTAC 4 cut(s) 207, 495, 564, 568
AfiI CCNNNNNNNGG 2 cut(s) 268, 472
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 1 cut(s) 433
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 2 cut(s) 106, 217
AluI AGCT 2 cut(s) 106, 217
Alw21I GWGCWC 3 cut(s) 39, 237, 465
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 2 cut(s) 182, 287
Aor13HI TCCGGA 1 cut(s) 288
AoxI GGCC 4 cut(s) 179, 242, 361, 480
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 117
AspLEI GCGC 2 cut(s) 249, 325
AspS9I GGNCC 4 cut(s) 180, 286, 361, 517
AsuC2I CCSGG 2 cut(s) 241, 521
AsuHPI GGTGA 1 cut(s) 379
AvaII GGWCC 2 cut(s) 286, 517
BaeGI GKGCMC 1 cut(s) 237
BaeI ACNNNNGTAYC 1 cut(s) 554
BalI TGGCCA 1 cut(s) 482
BbrPI CACGTG 2 cut(s) 232, 388
BbsI GAAGAC 2 cut(s) 166, 535
Bbv12I GWGCWC 3 cut(s) 39, 237, 465
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 94, 263, 304
BceAI ACGGC 3 cut(s) 224, 310, 476
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 2 cut(s) 241, 521
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 343
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 2 cut(s) 118, 245
BlsI GCNGC 2 cut(s) 119, 246
Bme1390I CCNGG 3 cut(s) 241, 365, 521
Bme18I GGWCC 2 cut(s) 286, 517
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 180, 286, 361, 517
BmiI GGNNCC 3 cut(s) 6, 374, 490
BmrFI CCNGG 3 cut(s) 241, 365, 521
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 2 cut(s) 166, 535
BpmI CTGGAG 2 cut(s) 347, 491
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 2 cut(s) 182, 197
BpuMI CCSGG 2 cut(s) 241, 521
BsaAI YACGTR 4 cut(s) 232, 388, 566, 570
BsaHI GRCGYC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 483, 520
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 472
BseAI TCCGGA 1 cut(s) 288
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 483, 520
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 268, 472
BseMII CTCAG 1 cut(s) 411
BseRI GAGGAG 4 cut(s) 88, 134, 137, 140
BseSI GKGCMC 1 cut(s) 237
BseX3I CGGCCG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 129
BseYI CCCAGC 2 cut(s) 102, 358
Bsh1236I CGCG 2 cut(s) 247, 249
Bsh1285I CGRYCG 1 cut(s) 245
BshFI GGCC 4 cut(s) 181, 244, 363, 482
BsiEI CGRYCG 1 cut(s) 245
BsiHKAI GWGCWC 3 cut(s) 39, 237, 465
BsiSI CCGG 3 cut(s) 241, 289, 520
BsiWI CGTACG 2 cut(s) 205, 566
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 268, 472
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 4 cut(s) 181, 244, 363, 482
Bsp1286I GDGCHC 3 cut(s) 39, 237, 465
Bsp13I TCCGGA 1 cut(s) 288
Bsp143I GATC 3 cut(s) 187, 201, 279
BspACI CCGC 1 cut(s) 245
BspANI GGCC 4 cut(s) 181, 244, 363, 482
BspCNI CTCAG 1 cut(s) 412
BspEI TCCGGA 1 cut(s) 288
BspFNI CGCG 2 cut(s) 247, 249
BspLI GGNNCC 3 cut(s) 6, 374, 490
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 2 cut(s) 182, 287
BssECI CCNNGG 2 cut(s) 483, 520
BssMI GATC 3 cut(s) 187, 201, 279
BssNI GRCGYC 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 498, 508
Bst6I CTCTTC 3 cut(s) 144, 215, 347
BstACI GRCGYC 1 cut(s) 534
BstBAI YACGTR 4 cut(s) 232, 388, 566, 570
BstDEI CTNAG 1 cut(s) 420
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 2 cut(s) 247, 249
BstHHI GCGC 2 cut(s) 249, 325
BstKTI GATC 3 cut(s) 190, 204, 282
BstMBI GATC 3 cut(s) 187, 201, 279
BstMCI CGRYCG 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 241, 488
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 239, 363, 519
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 237
BstSNI TACGTA 2 cut(s) 566, 570
BstUI CGCG 2 cut(s) 247, 249
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 2 cut(s) 166, 535
BstZI CGGCCG 1 cut(s) 242
BsuRI GGCC 4 cut(s) 181, 244, 363, 482
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 279, 504
BveI ACCTGC 1 cut(s) 550
CfoI GCGC 2 cut(s) 249, 325
Cfr13I GGNCC 4 cut(s) 180, 286, 361, 517
CseI GACGC 2 cut(s) 425, 523
Csp6I GTAC 4 cut(s) 206, 494, 563, 567
CviAII CATG 1 cut(s) 268
CviQI GTAC 4 cut(s) 206, 494, 563, 567
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 189, 203, 281
DpnII GATC 3 cut(s) 187, 201, 279
EaeI YGGCCR 2 cut(s) 242, 480
EagI CGGCCG 1 cut(s) 242
Eam1104I CTCTTC 3 cut(s) 144, 215, 347
EarI CTCTTC 3 cut(s) 144, 215, 347
EclXI CGGCCG 1 cut(s) 242
Eco105I TACGTA 2 cut(s) 566, 570
Eco130I CCWWGG 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 286, 517
Eco52I CGGCCG 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 239
Eco72I CACGTG 2 cut(s) 232, 388
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 1 cut(s) 271
FaiI YATR 1 cut(s) 269
FaqI GGGAC 1 cut(s) 396
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 118, 245
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 118, 245
FspBI CTAG 1 cut(s) 539
GlaI GCGC 2 cut(s) 248, 324
GluI GCNGC 2 cut(s) 118, 245
GsaI CCCAGC 2 cut(s) 106, 362
GsuI CTGGAG 2 cut(s) 347, 491
HaeIII GGCC 4 cut(s) 181, 244, 363, 482
HapII CCGG 3 cut(s) 241, 289, 520
HgaI GACGC 2 cut(s) 425, 523
HhaI GCGC 2 cut(s) 249, 325
Hin1I GRCGYC 1 cut(s) 534
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 247, 323
HinP1I GCGC 2 cut(s) 247, 323
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 1 cut(s) 225
HpaII CCGG 3 cut(s) 241, 289, 520
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 4 cut(s) 229, 235, 304, 415
Hpy188I TCNGA 3 cut(s) 187, 443, 454
Hpy188III TCNNGA 3 cut(s) 199, 289, 470
Hpy8I GTNNAC 4 cut(s) 229, 235, 304, 415
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 2 cut(s) 498, 508
HpyCH4IV ACGT 9 cut(s) 78, 171, 231, 300, 387, 411, 456, 565, 569
HpyCH4V TGCA 3 cut(s) 235, 267, 559
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 488
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 9 cut(s) 78, 171, 231, 300, 387, 411, 456, 565, 569
Hsp92I GRCGYC 1 cut(s) 534
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 247, 323
Kpn2I TCCGGA 1 cut(s) 288
Kzo9I GATC 3 cut(s) 187, 201, 279
LmnI GCTCC 4 cut(s) 10, 111, 468, 488
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 539
MaeII ACGT 9 cut(s) 78, 171, 231, 300, 387, 411, 456, 565, 569
MaeIII GTNAC 2 cut(s) 250, 508
MalI GATC 3 cut(s) 189, 203, 281
MboI GATC 3 cut(s) 187, 201, 279
MboII GAAGA 8 cut(s) 81, 122, 131, 150, 166, 232, 364, 535
MhlI GDGCHC 3 cut(s) 39, 237, 465
MlsI TGGCCA 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 421
Mox20I TGGCCA 1 cut(s) 482
MroI TCCGGA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 482
MspI CCGG 3 cut(s) 241, 289, 520
MspR9I CCNGG 3 cut(s) 241, 365, 521
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 2 cut(s) 247, 249
MwoI GCNNNNNNNGC 2 cut(s) 241, 488
NciI CCSGG 2 cut(s) 241, 521
NdeII GATC 3 cut(s) 187, 201, 279
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 3 cut(s) 6, 374, 490
NmeAIII GCCGAG 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 69
Pfl23II CGTACG 2 cut(s) 205, 566
PkrI GCNGC 2 cut(s) 119, 246
PleI GAGTC 1 cut(s) 233
PmaCI CACGTG 2 cut(s) 232, 388
PmlI CACGTG 2 cut(s) 232, 388
PpsI GAGTC 1 cut(s) 233
Ppu21I YACGTR 4 cut(s) 232, 388, 566, 570
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 363
PspCI CACGTG 2 cut(s) 232, 388
PspFI CCCAGC 2 cut(s) 102, 358
PspGI CCWGG 1 cut(s) 363
PspLI CGTACG 2 cut(s) 205, 566
PspN4I GGNNCC 3 cut(s) 6, 374, 490
PspPI GGNCC 4 cut(s) 180, 286, 361, 517
RsaI GTAC 4 cut(s) 207, 495, 564, 568
RsaNI GTAC 4 cut(s) 206, 494, 563, 567
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 2 cut(s) 118, 245
Sau3AI GATC 3 cut(s) 187, 201, 279
Sau96I GGNCC 4 cut(s) 180, 286, 361, 517
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 241, 365, 521
SduI GDGCHC 3 cut(s) 39, 237, 465
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 343
SinI GGWCC 2 cut(s) 286, 517
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 197, 212
SmoI CTYRAG 2 cut(s) 197, 212
SnaBI TACGTA 2 cut(s) 566, 570
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 3 cut(s) 239, 363, 519
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 498, 508
TaiI ACGT 9 cut(s) 81, 174, 234, 303, 390, 414, 459, 568, 572
TaqI TCGA 2 cut(s) 258, 308
TauI GCSGC 1 cut(s) 247
TscAI CASTG 2 cut(s) 279, 511
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 279, 511
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 286, 517
XagI CCTNNNNNAGG 1 cut(s) 470
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.