Rh2DG416600

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014261
Physical Location & Seq
Reverse (-)
60508687 .. 60510396
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG416600.1

Sequence Viewer

Length: 606 bp
ATGCCTACTCCTAGTTCCATTACCGCAGACCACATGGCTCCCTCCAAAACCCGACCACCACCACCAGAGCACCACCCATACATCCCATTAGCCCACGACCAAAGCGACAACGTTCTACCATCTTCTTACTCCTCCCAGCTCCCACAACGCAGCACAACCATTCTTCTCACTCTTCTCCTCCTCCTCCTATCTTCCTCCCTCTACGTCTTCTGGCCCTCCGATCCCTCCCTCAAGATCGTACGGCTCAAGCTGAAGAGAGTCCACGTGCACACCCGGCCGCGCGTGACCATCGACCTGTGCATGGCCGTGAGGATCAAGGTCCGGAACGGCGACGTTTACTCGATGGACTACGATGCGCTGGAGGTCGGGGTTGGCTACAGAGGGAAGAGGCTGGGCCAGGTGAGGTTCCAGCAGGGACACGTGAGGGCTTTTGGGTCATCTTACGTTGACGCTGAGGTGGAGTTCAATGGGGTCGGAGTGTTTTCCGACGTGGTGCTCCTTCTGGAGGACTTGGCCAAGGGAGCCGTACCGTTTGACACTGTTACGGAGGTCCGGGGGAAGCTTGGCGTCCTAGTCTTCCACTTCCCTTTGCAGGTACGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

201

Amino Acids

22.4

Weight (kDa)

9.27

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 105 - 199 8.7e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52330 AT1G52330
fragaria_vesca FvH4_6g31230 FvH4_6g31230
malus_domestica MD17G1194600.v1.1
prunus_persica Prupe.3G070600_v2.0.a1
pyrus_communis pycom17g20040
rosa_chinensis RchiOBHm_Chr2g0137941
rosa_laevigata RLG00000019692
rosa_multiflora Rmu_sc0002170.1_g000035
rosa_roxburghii Rroxscaffold_2G00106630
rosa_rugosa Rorug02G0348200
rosa_samantha Rh2AG394700 Rh2BG401700 Rh2CG381300 Rh2DG416600
rosa_wichuraiana Rw2G032280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccII CGCG 2 cut(s) 280, 282
AccIII TCCGGA 1 cut(s) 321
AciI CCGC 2 cut(s) 24, 278
AclI AACGTT 1 cut(s) 111
AclWI GGATC 2 cut(s) 215, 320
AcoI YGGCCR 3 cut(s) 275, 303, 513
AcuI CTGAAG 1 cut(s) 272
AcvI CACGTG 2 cut(s) 265, 421
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 4 cut(s) 240, 528, 597, 601
AfiI CCNNNNNNNGG 3 cut(s) 301, 505, 592
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 1 cut(s) 466
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 3 cut(s) 139, 250, 562
AluI AGCT 3 cut(s) 139, 250, 562
Alw21I GWGCWC 3 cut(s) 72, 270, 498
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 2 cut(s) 215, 320
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 5 cut(s) 212, 275, 303, 394, 513
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 150
AspLEI GCGC 2 cut(s) 282, 358
AspS9I GGNCC 4 cut(s) 213, 319, 394, 550
AsuC2I CCSGG 2 cut(s) 274, 554
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 2 cut(s) 319, 550
BaeGI GKGCMC 1 cut(s) 270
BaeI ACNNNNGTAYC 1 cut(s) 587
BalI TGGCCA 1 cut(s) 515
BbrPI CACGTG 2 cut(s) 265, 421
BbsI GAAGAC 2 cut(s) 199, 568
Bbv12I GWGCWC 3 cut(s) 72, 270, 498
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 162
BccI CCATC 3 cut(s) 127, 296, 337
BceAI ACGGC 4 cut(s) 257, 290, 343, 509
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 2 cut(s) 274, 554
BfaI CTAG 2 cut(s) 12, 572
BfmI CTRYAG 1 cut(s) 376
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 2 cut(s) 151, 278
BlsI GCNGC 2 cut(s) 152, 279
Bme1390I CCNGG 3 cut(s) 274, 398, 554
Bme18I GGWCC 2 cut(s) 319, 550
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 4 cut(s) 213, 319, 394, 550
BmiI GGNNCC 3 cut(s) 39, 407, 523
BmrFI CCNGG 3 cut(s) 274, 398, 554
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 2 cut(s) 199, 568
BpmI CTGGAG 2 cut(s) 380, 524
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 215, 230
BpuMI CCSGG 2 cut(s) 274, 554
BsaAI YACGTR 4 cut(s) 265, 421, 599, 603
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 516, 553
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 505, 592
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 516, 553
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 301, 505, 592
BseMII CTCAG 1 cut(s) 444
BseRI GAGGAG 4 cut(s) 121, 167, 170, 173
BseSI GKGCMC 1 cut(s) 270
BseX3I CGGCCG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 2 cut(s) 135, 391
Bsh1236I CGCG 2 cut(s) 280, 282
Bsh1285I CGRYCG 1 cut(s) 278
BshFI GGCC 5 cut(s) 214, 277, 305, 396, 515
BsiEI CGRYCG 1 cut(s) 278
BsiHKAI GWGCWC 3 cut(s) 72, 270, 498
BsiSI CCGG 3 cut(s) 274, 322, 553
BsiWI CGTACG 2 cut(s) 238, 599
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 3 cut(s) 301, 505, 592
BsmFI GGGAC 1 cut(s) 429
BsnI GGCC 5 cut(s) 214, 277, 305, 396, 515
Bsp1286I GDGCHC 3 cut(s) 72, 270, 498
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 220, 234, 312
BspACI CCGC 2 cut(s) 24, 278
BspANI GGCC 5 cut(s) 214, 277, 305, 396, 515
BspCNI CTCAG 1 cut(s) 445
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 2 cut(s) 280, 282
BspLI GGNNCC 3 cut(s) 39, 407, 523
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 2 cut(s) 215, 320
BssECI CCNNGG 2 cut(s) 516, 553
BssMI GATC 3 cut(s) 220, 234, 312
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 2 cut(s) 531, 541
Bst6I CTCTTC 3 cut(s) 177, 248, 380
BstACI GRCGYC 1 cut(s) 567
BstBAI YACGTR 4 cut(s) 265, 421, 599, 603
BstDEI CTNAG 1 cut(s) 453
BstENI CCTNNNNNAGG 1 cut(s) 503
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 2 cut(s) 280, 282
BstHHI GCGC 2 cut(s) 282, 358
BstKTI GATC 3 cut(s) 223, 237, 315
BstMBI GATC 3 cut(s) 220, 234, 312
BstMCI CGRYCG 1 cut(s) 278
BstMWI GCNNNNNNNGC 2 cut(s) 274, 521
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 3 cut(s) 272, 396, 552
BstSFI CTRYAG 1 cut(s) 376
BstSLI GKGCMC 1 cut(s) 270
BstSNI TACGTA 2 cut(s) 599, 603
BstUI CGCG 2 cut(s) 280, 282
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 2 cut(s) 199, 568
BstZI CGGCCG 1 cut(s) 275
BsuRI GGCC 5 cut(s) 214, 277, 305, 396, 515
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 537
BveI ACCTGC 1 cut(s) 583
CfoI GCGC 2 cut(s) 282, 358
Cfr13I GGNCC 4 cut(s) 213, 319, 394, 550
CseI GACGC 2 cut(s) 458, 556
Csp6I GTAC 4 cut(s) 239, 527, 596, 600
CviAII CATG 2 cut(s) 34, 301
CviQI GTAC 4 cut(s) 239, 527, 596, 600
DdeI CTNAG 1 cut(s) 453
DpnI GATC 3 cut(s) 222, 236, 314
DpnII GATC 3 cut(s) 220, 234, 312
EaeI YGGCCR 3 cut(s) 275, 303, 513
EagI CGGCCG 1 cut(s) 275
Eam1104I CTCTTC 3 cut(s) 177, 248, 380
EarI CTCTTC 3 cut(s) 177, 248, 380
EclXI CGGCCG 1 cut(s) 275
Eco105I TACGTA 2 cut(s) 599, 603
Eco130I CCWWGG 1 cut(s) 516
Eco47I GGWCC 2 cut(s) 319, 550
Eco52I CGGCCG 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 272
Eco72I CACGTG 2 cut(s) 265, 421
EcoNI CCTNNNNNAGG 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 2 cut(s) 37, 304
FaiI YATR 3 cut(s) 35, 79, 302
FaqI GGGAC 1 cut(s) 429
FatI CATG 2 cut(s) 33, 300
Fnu4HI GCNGC 2 cut(s) 151, 278
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 151, 278
FspBI CTAG 2 cut(s) 12, 572
GlaI GCGC 2 cut(s) 281, 357
GluI GCNGC 2 cut(s) 151, 278
GsaI CCCAGC 2 cut(s) 139, 395
GsuI CTGGAG 2 cut(s) 380, 524
HaeIII GGCC 5 cut(s) 214, 277, 305, 396, 515
HapII CCGG 3 cut(s) 274, 322, 553
HgaI GACGC 2 cut(s) 458, 556
HhaI GCGC 2 cut(s) 282, 358
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 2 cut(s) 37, 304
Hin6I GCGC 2 cut(s) 280, 356
HinP1I GCGC 2 cut(s) 280, 356
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 1 cut(s) 258
HpaII CCGG 3 cut(s) 274, 322, 553
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 4 cut(s) 262, 268, 337, 448
Hpy188I TCNGA 3 cut(s) 220, 476, 487
Hpy188III TCNNGA 3 cut(s) 232, 322, 503
Hpy8I GTNNAC 4 cut(s) 262, 268, 337, 448
Hpy99I CGWCG 2 cut(s) 335, 491
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 2 cut(s) 531, 541
HpyCH4IV ACGT 9 cut(s) 111, 204, 264, 333, 420, 444, 489, 598, 602
HpyCH4V TGCA 3 cut(s) 268, 300, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 521
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 9 cut(s) 111, 204, 264, 333, 420, 444, 489, 598, 602
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 2 cut(s) 37, 304
HspAI GCGC 2 cut(s) 280, 356
Kpn2I TCCGGA 1 cut(s) 321
Kzo9I GATC 3 cut(s) 220, 234, 312
LmnI GCTCC 4 cut(s) 43, 144, 501, 521
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 12, 572
MaeII ACGT 9 cut(s) 111, 204, 264, 333, 420, 444, 489, 598, 602
MaeIII GTNAC 2 cut(s) 283, 541
MalI GATC 3 cut(s) 222, 236, 314
MboI GATC 3 cut(s) 220, 234, 312
MboII GAAGA 8 cut(s) 114, 155, 164, 183, 199, 265, 397, 568
MhlI GDGCHC 3 cut(s) 72, 270, 498
MlsI TGGCCA 1 cut(s) 515
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 454, 510
Mox20I TGGCCA 1 cut(s) 515
MroI TCCGGA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 515
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 515
MspI CCGG 3 cut(s) 274, 322, 553
MspR9I CCNGG 3 cut(s) 274, 398, 554
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 2 cut(s) 280, 282
MwoI GCNNNNNNNGC 2 cut(s) 274, 521
NciI CCSGG 2 cut(s) 274, 554
NdeII GATC 3 cut(s) 220, 234, 312
NlaIII CATG 2 cut(s) 37, 304
NlaIV GGNNCC 3 cut(s) 39, 407, 523
NmuCI GTSAC 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 102
Pfl23II CGTACG 2 cut(s) 238, 599
PkrI GCNGC 2 cut(s) 152, 279
PleI GAGTC 1 cut(s) 266
PmaCI CACGTG 2 cut(s) 265, 421
PmlI CACGTG 2 cut(s) 265, 421
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 4 cut(s) 265, 421, 599, 603
Psp1406I AACGTT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 396
PspCI CACGTG 2 cut(s) 265, 421
PspFI CCCAGC 2 cut(s) 135, 391
PspGI CCWGG 1 cut(s) 396
PspLI CGTACG 2 cut(s) 238, 599
PspN4I GGNNCC 3 cut(s) 39, 407, 523
PspPI GGNCC 4 cut(s) 213, 319, 394, 550
RsaI GTAC 4 cut(s) 240, 528, 597, 601
RsaNI GTAC 4 cut(s) 239, 527, 596, 600
RseI CAYNNNNRTG 1 cut(s) 305
SatI GCNGC 2 cut(s) 151, 278
Sau3AI GATC 3 cut(s) 220, 234, 312
Sau96I GGNCC 4 cut(s) 213, 319, 394, 550
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 3 cut(s) 274, 398, 554
SduI GDGCHC 3 cut(s) 72, 270, 498
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 2 cut(s) 319, 550
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 230, 245
SmoI CTYRAG 2 cut(s) 230, 245
SnaBI TACGTA 2 cut(s) 599, 603
SsiI CCGC 2 cut(s) 24, 278
SspMI CTAG 2 cut(s) 12, 572
StyD4I CCNGG 3 cut(s) 272, 396, 552
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 2 cut(s) 531, 541
TaiI ACGT 9 cut(s) 114, 207, 267, 336, 423, 447, 492, 601, 605
TaqI TCGA 2 cut(s) 291, 341
TauI GCSGC 1 cut(s) 280
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 1 cut(s) 544
VneI GTGCAC 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 319, 550
XagI CCTNNNNNAGG 1 cut(s) 503
XspI CTAG 2 cut(s) 12, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.