Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013046

Physical Location & Seq

Genomic Coordinates Reverse (-)

19696923 .. 19698482

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGTATCCAAGAAACTGACCCGTTAACGCAATTGAGTTTACCACCGGGTTTCCGATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCTCTGTAGAAAAGCAGCTGGTTACGATTTCTCTCTTCAGCTCATCGCCGAAATAGATCTTTACAAATTCGATCCATGGGTTTTACCAAATAAAGCATTATTTGGAGAAAAAGAATGGTATTTTTTTAGTCCTAGGGATAGAAAATATCCAAACGGGTCAAGACCTAACCGGGTTGCCGGATCGGGTTATTGGAAAGCTACGGGTACGGATAAAATAATCTCGACGGAAGGACAAAGAGTTGGTATTAAAAAAGCTTTGGTGTTTTACATCGGAAAAGCTCCTAAAGGTACTAAAACCAATTGGATCATGCATGAGTATCGTCTCATTGAACCTTCTCGTAGAAACGGAAGCACTAAGTTGGATGATTGGGTTCTATGTCGAATATACAAGAAGCAATCAAGTGCACAAAAACAAGTTTACGATAATGGAATCGCGAATGCTAGAGAATTCAGCAACAACGGTACTTCGTCCACGACGTCGTCTTCTTCTCACTTTGAAGACGTTCTTGATTCGTTTCATCAAGAGATCGACAACAGAAATTTCCAGTTTTCTAACCCAAACCGCATCTCGTCGCTCAGACCGGACTTAACCGAACAGAAAACCGGGTTCCACGGTCTTGCGGATACTTCTAACTTCGATTGGGCTAGTTTTGCCGGTAATGTTGAGCATAATAACTCGGTACCGGAACTCGGAATGAGTCATGTTGTTCCTAATCTCGAGTACAACTGTGGCTACCTGAAGACGGAGGAGGAAGTCGAGAGCAGTCACGGGTTTAATAACTCGGGCGAGTTAGCTCAAAAGGGTTATGGTGTTGACTCGTTTGGGTATTCGGGGCAAGTTGGTGGGTTTGGGTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

317

Amino Acids

35.81

Weight (kDa)

6.02

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 139	1.2e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca	FvH4_3g20690
malus_domestica	MD03G1222700.v1.1
prunus_persica	Prupe.4G186800_v2.0.a1
pyrus_communis	pycom03g17140 pycom11g21210
rosa_chinensis	RchiOBHm_Chr5g0034761
rosa_multiflora	Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii	Rroxscaffold_1G00045540
rosa_rugosa	Rorug05G0148400
rosa_samantha	Rh5AG240800 Rh5CG271800
rosa_wichuraiana	Rw5G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	572
Acc65I	GGTACC	1 cut(s)	772
AccB1I	GGYRCC	1 cut(s)	772
AccII	CGCG	1 cut(s)	527
AciI	CCGC	2 cut(s)	655, 713
AclWI	GGATC	3 cut(s)	158, 280, 404
AcsI	RAATTY	3 cut(s)	158, 539, 631
AcuI	CTGAAG	2 cut(s)	113, 851
AcyI	GRCGYC	1 cut(s)	569
AfaI	GTAC	5 cut(s)	298, 382, 556, 774, 815
AfiI	CCNNNNNNNGG	2 cut(s)	782, 835
AgsI	TTSAA	3 cut(s)	89, 422, 590
AluBI	AGCT	7 cut(s)	79, 110, 133, 290, 347, 371, 887
AluI	AGCT	7 cut(s)	79, 110, 133, 290, 347, 371, 887
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	1 cut(s)	419
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	3 cut(s)	158, 280, 404
Ama87I	CYCGRG	2 cut(s)	809, 874
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	3 cut(s)	158, 539, 631
Asp700I	GAANNNNTTC	1 cut(s)	594
Asp718I	GGTACC	1 cut(s)	772
AspA2I	CCTAGG	1 cut(s)	224
AsuC2I	CCSGG	3 cut(s)	48, 263, 697
AvaI	CYCGRG	2 cut(s)	809, 874
AvrII	CCTAGG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	772
BbsI	GAAGAC	3 cut(s)	567, 597, 839
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciVI	GTATCC	2 cut(s)	17, 709
BcnI	CCSGG	3 cut(s)	48, 263, 697
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	3 cut(s)	225, 534, 738
BfmI	CTRYAG	1 cut(s)	97
BfuI	GTATCC	2 cut(s)	17, 709
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	1 cut(s)	108
BlnI	CCTAGG	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	3 cut(s)	48, 263, 697
BmeT110I	CYCGRG	2 cut(s)	809, 874
BmiI	GGNNCC	2 cut(s)	701, 774
BmrFI	CCNGG	3 cut(s)	48, 263, 697
BmsI	GCATC	1 cut(s)	666
BpiI	GAAGAC	3 cut(s)	567, 597, 839
BpuMI	CCSGG	3 cut(s)	48, 263, 697
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	167, 224, 703
BsaWI	WCCGGW	2 cut(s)	673, 775
Bsc4I	CCNNNNNNNGG	2 cut(s)	782, 835
Bse118I	RCCGGY	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	167, 224, 703
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	782, 835
BseMII	CTCAG	1 cut(s)	682
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	1 cut(s)	854
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	772
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	2 cut(s)	809, 874
BsiSI	CCGG	7 cut(s)	47, 262, 270, 674, 696, 747, 776
BslI	CCNNNNNNNGG	2 cut(s)	782, 835
BsmAI	GTCTC	1 cut(s)	419
BsmBI	CGTCTC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	535
BsoBI	CYCGRG	2 cut(s)	809, 874
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	5 cut(s)	148, 163, 272, 396, 618
Bsp19I	CCATGG	1 cut(s)	167
Bsp68I	TCGCGA	1 cut(s)	527
BspACI	CCGC	2 cut(s)	655, 713
BspCNI	CTCAG	1 cut(s)	681
BspFNI	CGCG	1 cut(s)	527
BspLI	GGNNCC	2 cut(s)	701, 774
BspPI	GGATC	3 cut(s)	158, 280, 404
BspQI	GCTCTTC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	772
BsrFI	RCCGGY	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	3 cut(s)	167, 224, 703
BssMI	GATC	5 cut(s)	148, 163, 272, 396, 618
BssNI	GRCGYC	1 cut(s)	569
BssT1I	CCWWGG	2 cut(s)	167, 224
Bst4CI	ACNGT	3 cut(s)	554, 707, 821
Bst6I	CTCTTC	2 cut(s)	69, 132
BstACI	GRCGYC	1 cut(s)	569
BstDEI	CTNAG	2 cut(s)	447, 668
BstDSI	CCRYGG	2 cut(s)	167, 703
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	527
BstKTI	GATC	5 cut(s)	151, 166, 275, 399, 621
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	5 cut(s)	148, 163, 272, 396, 618
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstSCI	CCNGG	3 cut(s)	46, 261, 695
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	499
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	3 cut(s)	567, 597, 839
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuI	GTATCC	2 cut(s)	17, 709
BtgI	CCRYGG	2 cut(s)	167, 703
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	460
BtuMI	TCGCGA	1 cut(s)	527
Cfr10I	RCCGGY	1 cut(s)	746
Csp6I	GTAC	5 cut(s)	297, 381, 555, 773, 814
CviAII	CATG	4 cut(s)	168, 400, 404, 794
CviJI	RGCY	9 cut(s)	79, 110, 133, 290, 347, 371, 737, 825, 887
CviKI_1	RGCY	9 cut(s)	79, 110, 133, 290, 347, 371, 737, 825, 887
CviQI	GTAC	5 cut(s)	297, 381, 555, 773, 814
DdeI	CTNAG	2 cut(s)	447, 668
DpnI	GATC	5 cut(s)	150, 165, 274, 398, 620
DpnII	GATC	5 cut(s)	148, 163, 272, 396, 618
Eam1104I	CTCTTC	2 cut(s)	69, 132
EarI	CTCTTC	2 cut(s)	69, 132
Eco130I	CCWWGG	2 cut(s)	167, 224
Eco57I	CTGAAG	2 cut(s)	113, 851
Eco88I	CYCGRG	2 cut(s)	809, 874
EcoRI	GAATTC	1 cut(s)	539
EcoT14I	CCWWGG	2 cut(s)	167, 224
EcoT22I	ATGCAT	1 cut(s)	405
ErhI	CCWWGG	2 cut(s)	167, 224
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	4 cut(s)	171, 403, 407, 797
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FatI	CATG	4 cut(s)	167, 399, 403, 793
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	3 cut(s)	225, 534, 738
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	7 cut(s)	47, 262, 270, 674, 696, 747, 776
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	4 cut(s)	171, 403, 407, 797
HincII	GTYRAC	2 cut(s)	27, 907
HindII	GTYRAC	2 cut(s)	27, 907
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	4 cut(s)	522, 602, 790, 908
HpaI	GTTAAC	1 cut(s)	27
HpaII	CCGG	7 cut(s)	47, 262, 270, 674, 696, 747, 776
Hpy166II	GTNNAC	6 cut(s)	27, 41, 497, 511, 564, 907
Hpy188I	TCNGA	4 cut(s)	56, 365, 671, 785
Hpy188III	TCNNGA	7 cut(s)	252, 313, 526, 599, 614, 809, 850
Hpy8I	GTNNAC	6 cut(s)	27, 41, 497, 511, 564, 907
Hpy99I	CGWCG	4 cut(s)	319, 571, 574, 667
HpyAV	CCTTC	2 cut(s)	314, 435
HpyCH4III	ACNGT	3 cut(s)	554, 707, 821
HpyCH4IV	ACGT	2 cut(s)	569, 594
HpyCH4V	TGCA	2 cut(s)	403, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	2 cut(s)	447, 668
HpySE526I	ACGT	2 cut(s)	569, 594
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	4 cut(s)	171, 403, 407, 797
KpnI	GGTACC	1 cut(s)	776
KspAI	GTTAAC	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	148, 163, 272, 396, 618
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	3 cut(s)	225, 534, 738
MaeII	ACGT	2 cut(s)	569, 594
MaeIII	GTNAC	2 cut(s)	113, 857
MalI	GATC	5 cut(s)	150, 165, 274, 398, 620
MboI	GATC	5 cut(s)	148, 163, 272, 396, 618
MboII	GAAGA	6 cut(s)	86, 119, 567, 570, 602, 844
MfeI	CAATTG	2 cut(s)	32, 391
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	5 cut(s)	32, 158, 391, 539, 631
MlyI	GAGTC	2 cut(s)	799, 902
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	2 cut(s)	832, 835
Mph1103I	ATGCAT	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	4 cut(s)	26, 339, 680, 867
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	7 cut(s)	47, 262, 270, 674, 696, 747, 776
MspR9I	CCNGG	3 cut(s)	48, 263, 697
MunI	CAATTG	2 cut(s)	32, 391
Mva1269I	GAATGC	1 cut(s)	535
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	743
NciI	CCSGG	3 cut(s)	48, 263, 697
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	5 cut(s)	148, 163, 272, 396, 618
NlaIII	CATG	4 cut(s)	171, 403, 407, 797
NlaIV	GGNNCC	2 cut(s)	701, 774
NmuCI	GTSAC	1 cut(s)	857
NruI	TCGCGA	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	809
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	522, 602
PflFI	GACNNNGTC	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	798, 902
PpsI	GAGTC	2 cut(s)	798, 902
PspN4I	GGNNCC	2 cut(s)	701, 774
PsuI	RGATCY	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	110
RruI	TCGCGA	1 cut(s)	527
RsaI	GTAC	5 cut(s)	298, 382, 556, 774, 815
RsaNI	GTAC	5 cut(s)	297, 381, 555, 773, 814
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	26, 339, 680, 867
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	5 cut(s)	148, 163, 272, 396, 618
SchI	GAGTC	2 cut(s)	799, 902
ScrFI	CCNGG	3 cut(s)	48, 263, 697
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	666
SfcI	CTRYAG	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	809
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	5 cut(s)	32, 158, 391, 539, 631
SsiI	CCGC	2 cut(s)	655, 713
SspMI	CTAG	3 cut(s)	225, 534, 738
StyD4I	CCNGG	3 cut(s)	46, 261, 695
StyI	CCWWGG	2 cut(s)	167, 224
TaaI	ACNGT	3 cut(s)	554, 707, 821
TaiI	ACGT	2 cut(s)	572, 597
TaqI	TCGA	7 cut(s)	162, 314, 472, 621, 729, 810, 849
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	5 cut(s)	32, 158, 391, 539, 631
TatI	WGTACW	1 cut(s)	813
TfiI	GAWTC	2 cut(s)	522, 602
Tru1I	TTAA	4 cut(s)	26, 339, 680, 867
Tru9I	TTAA	4 cut(s)	26, 339, 680, 867
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	2 cut(s)	87, 599
TspGWI	ACGGA	4 cut(s)	314, 332, 453, 851
Tth111I	GACNNNGTC	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	495
XapI	RAATTY	3 cut(s)	158, 539, 631
XhoI	CTCGAG	1 cut(s)	809
XmaJI	CCTAGG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	3 cut(s)	225, 534, 738
ZraI	GACGTC	1 cut(s)	570
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.