Rroxscaffold_1G00045540
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
64625450 .. 64627338
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045540.1

Sequence Viewer

Length: 1068 bp
ATGGGCGTGCCGGAAACCGACCCTCTTTCTCAGCTAAGCTTGCCGCCGGGGTTTCGGTTCTATCCTACCGACGAGGAGCTTCTCGTTCAGTATCTATGTCGGAAGGTTGCTGGGTACCAATTCAACTTGCAGATTATTGGTGAAATTGACCTATACAAGTTCGATCCTTGGGTTCTACCAAGCAAAGCCATTTTTGGTGAGAAGGAATGGTATTTTTTCAGTCCAAGGGACCGGAAGTACCCGAACGGGTCACGGCCCAATCGGGTAGCCGGGTCCGGGTACTGGAAGGCCACCGGTACCGATAAGATCATCACCACCGAAGGTCGGAAAGTTGGAATCAAGAAGGCGCTTGTGTTTTATGTCGGCAAAGCTCCGAAAGGAACCAAAACCAATTGGATTATGCACGAGTACCGCCTCATAGAGCCTTCACGCAAAAATGGCAGCTCGAAGTTGGATGAATGGGTGCTGTGTCGTATTTACAAGAAGAGCTCCAGCTCGAGCGCAGTACAGAAGCCGATGTCAACGATGGAAAACGTTCCGAGCAAAGAGCAGAGCTGCAACGGCTCGTCGTCCGAGTGCTCTTCGCAACTGGACGACGTGCTCGAGTGGTTGCCGGAGATTGAGGACAGGTTCTTCACTCTGCCGCGAATCAACTCGCTTAAGGCTCTACCCCAGCAGCAGGAGGACAACAAGCTCAATGTTCAGAATCTGGGGAATCTCGGGTCGGGCAATTTCGACTGGGCGAGTCTAGCCGGGCTCAACCCGGTGCAGGAAGTAGTTCCCAATACCCAAGCCCAAGGACAGGCGCAGCTAAATTACAACAATGACTTCTATGTCCCTTCGATCCCACCTCTCTGCCACGTGGAATCGCCGCCGCAGAGGATGGGAAGGAAAGTGGAGGAGGAGGTGCAGAGTGGACTCAGAACTCAGCGAGTTGAAAACTCGGGATTGTTCCAGCAGAACTCGAACCTGTTCACGCAAAACATGCGCACCCCGATTGACACGTACGGGTTGGGCACCCGATTCGGCCTGGCCGGGCCGGGTTTCAGCTACGGCAGTGAAAAGTGA

Protein Analysis

355

Amino Acids

40.02

Weight (kDa)

8.43

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 139 6.3e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013046)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 833
Acc16I TGCGCA 1 cut(s) 989
Acc65I GGTACC 2 cut(s) 114, 296
AccB1I GGYRCC 3 cut(s) 114, 296, 1016
AccII CGCG 1 cut(s) 646
AciI CCGC 5 cut(s) 44, 412, 644, 872, 875
AclI AACGTT 1 cut(s) 534
AclWI GGATC 2 cut(s) 158, 838
AcoI YGGCCR 1 cut(s) 1032
AcvI CACGTG 1 cut(s) 862
AfaI GTAC 7 cut(s) 116, 239, 281, 298, 410, 507, 1007
AfiI CCNNNNNNNGG 6 cut(s) 276, 282, 324, 679, 769, 802
AflII CTTAAG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 1002
AgeI ACCGGT 1 cut(s) 293
AgsI TTSAA 2 cut(s) 124, 938
AjiI CACGTC 1 cut(s) 598
AjnI CCWGG 1 cut(s) 1029
Alw21I GWGCWC 3 cut(s) 491, 581, 603
AlwI GGATC 2 cut(s) 158, 838
AlwNI CAGNNNCTG 1 cut(s) 709
Ama87I CYCGRG 4 cut(s) 496, 602, 719, 943
AoxI GGCC 5 cut(s) 254, 288, 1027, 1032, 1037
ApeKI GCWGC 4 cut(s) 441, 555, 676, 808
AsiGI ACCGGT 1 cut(s) 293
Asp700I GAANNNNTTC 3 cut(s) 534, 777, 971
Asp718I GGTACC 2 cut(s) 114, 296
AspLEI GCGC 4 cut(s) 349, 503, 808, 990
AspS9I GGNCC 4 cut(s) 229, 255, 273, 1037
AsuC2I CCSGG 7 cut(s) 48, 271, 277, 754, 764, 1036, 1041
AsuHPI GGTGA 3 cut(s) 152, 209, 304
AvaI CYCGRG 4 cut(s) 496, 602, 719, 943
AvaII GGWCC 2 cut(s) 229, 273
BaeGI GKGCMC 1 cut(s) 1019
BanI GGYRCC 3 cut(s) 114, 296, 1016
BanII GRGCYC 2 cut(s) 491, 759
BauI CACGAG 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 862
Bbv12I GWGCWC 3 cut(s) 491, 581, 603
BbvI GCAGC 4 cut(s) 453, 542, 688, 820
BccI CCATC 2 cut(s) 520, 877
BceAI ACGGC 2 cut(s) 269, 577
BcgI CGANNNNNNTGC 2 cut(s) 1006, 1040
BciT130I CCWGG 1 cut(s) 1031
BcnI CCSGG 7 cut(s) 48, 271, 277, 754, 764, 1036, 1041
BfaI CTAG 1 cut(s) 749
BfoI RGCGCY 1 cut(s) 350
BfrI CTTAAG 1 cut(s) 659
BisI GCNGC 8 cut(s) 44, 442, 556, 644, 677, 809, 872, 875
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 8 cut(s) 45, 443, 557, 645, 678, 810, 873, 876
Bme1390I CCNGG 8 cut(s) 48, 271, 277, 754, 764, 1031, 1036, 1041
Bme18I GGWCC 2 cut(s) 229, 273
BmeT110I CYCGRG 4 cut(s) 496, 602, 719, 943
BmgBI CACGTC 1 cut(s) 598
BmgT120I GGNCC 4 cut(s) 229, 255, 273, 1037
BmiI GGNNCC 6 cut(s) 116, 230, 274, 298, 382, 1018
BmrFI CCNGG 8 cut(s) 48, 271, 277, 754, 764, 1031, 1036, 1041
BmrI ACTGGG 1 cut(s) 748
BmuI ACTGGG 1 cut(s) 748
BpmI CTGGAG 1 cut(s) 475
Bpu1102I GCTNAGC 1 cut(s) 35
BpuMI CCSGG 7 cut(s) 48, 271, 277, 754, 764, 1036, 1041
BsaAI YACGTR 2 cut(s) 862, 1005
BsaJI CCNNGG 4 cut(s) 47, 167, 224, 796
BsaWI WCCGGW 2 cut(s) 231, 293
Bsc4I CCNNNNNNNGG 6 cut(s) 276, 282, 324, 679, 769, 802
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 3 cut(s) 287, 594, 743
BseBI CCWGG 1 cut(s) 1031
BseDI CCNNGG 4 cut(s) 47, 167, 224, 796
BseGI GGATG 2 cut(s) 460, 888
BseLI CCNNNNNNNGG 6 cut(s) 276, 282, 324, 679, 769, 802
BseMII CTCAG 3 cut(s) 44, 934, 941
BseNI ACTGG 3 cut(s) 287, 594, 743
BseRI GAGGAG 3 cut(s) 89, 914, 917
BseSI GKGCMC 1 cut(s) 1019
BseXI GCAGC 4 cut(s) 453, 542, 688, 820
BseYI CCCAGC 2 cut(s) 110, 672
BsgI GTGCAG 2 cut(s) 788, 929
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 5 cut(s) 256, 290, 1029, 1034, 1039
BshNI GGYRCC 3 cut(s) 114, 296, 1016
BshTI ACCGGT 1 cut(s) 293
BsiHKAI GWGCWC 3 cut(s) 491, 581, 603
BsiHKCI CYCGRG 4 cut(s) 496, 602, 719, 943
BsiWI CGTACG 1 cut(s) 1005
BslFI GGGAC 2 cut(s) 242, 821
BslI CCNNNNNNNGG 6 cut(s) 276, 282, 324, 679, 769, 802
BsmFI GGGAC 2 cut(s) 242, 821
BsnI GGCC 5 cut(s) 256, 290, 1029, 1034, 1039
BsoBI CYCGRG 4 cut(s) 496, 602, 719, 943
Bsp1286I GDGCHC 5 cut(s) 491, 581, 603, 759, 1019
Bsp143I GATC 3 cut(s) 163, 306, 843
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 5 cut(s) 44, 412, 644, 872, 875
BspANI GGCC 5 cut(s) 256, 290, 1029, 1034, 1039
BspCNI CTCAG 3 cut(s) 43, 933, 940
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 6 cut(s) 116, 230, 274, 298, 382, 1018
BspPI GGATC 2 cut(s) 158, 838
BspQI GCTCTTC 2 cut(s) 479, 586
BspT107I GGYRCC 3 cut(s) 114, 296, 1016
BspTI CTTAAG 1 cut(s) 659
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 3 cut(s) 287, 594, 743
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 4 cut(s) 47, 167, 224, 796
BssMI GATC 3 cut(s) 163, 306, 843
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 3 cut(s) 167, 224, 796
Bst2BI CACGAG 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 1031
Bst6I CTCTTC 2 cut(s) 479, 586
BstAFI CTTAAG 1 cut(s) 659
BstAPI GCANNNNNTGC 1 cut(s) 985
BstBAI YACGTR 2 cut(s) 862, 1005
BstC8I GCNNGC 2 cut(s) 8, 41
BstDEI CTNAG 4 cut(s) 30, 35, 920, 927
BstF5I GGATG 2 cut(s) 460, 888
BstFNI CGCG 1 cut(s) 646
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 4 cut(s) 349, 503, 808, 990
BstKTI GATC 3 cut(s) 166, 309, 846
BstMBI GATC 3 cut(s) 163, 306, 843
BstMWI GCNNNNNNNGC 5 cut(s) 40, 438, 561, 749, 985
BstNI CCWGG 1 cut(s) 1031
BstNSI RCATGY 1 cut(s) 988
BstSCI CCNGG 8 cut(s) 46, 269, 275, 752, 762, 1029, 1034, 1039
BstSLI GKGCMC 1 cut(s) 1019
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 4 cut(s) 453, 542, 688, 820
BsuRI GGCC 5 cut(s) 256, 290, 1029, 1034, 1039
BtrI CACGTC 1 cut(s) 598
BtsCI GGATG 2 cut(s) 460, 888
BtsI GCAGTG 1 cut(s) 1063
BtsIMutI CAGTG 1 cut(s) 1063
Cac8I GCNNGC 2 cut(s) 8, 41
CaiI CAGNNNCTG 1 cut(s) 709
CfoI GCGC 4 cut(s) 349, 503, 808, 990
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 229, 255, 273, 1037
Csp6I GTAC 7 cut(s) 115, 238, 280, 297, 409, 506, 1006
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 1 cut(s) 985
CviQI GTAC 7 cut(s) 115, 238, 280, 297, 409, 506, 1006
DdeI CTNAG 4 cut(s) 30, 35, 920, 927
DpnI GATC 3 cut(s) 165, 308, 845
DpnII GATC 3 cut(s) 163, 306, 843
DrdI GACNNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 833
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 2 cut(s) 479, 586
EarI CTCTTC 2 cut(s) 479, 586
Ecl136II GAGCTC 1 cut(s) 489
Eco130I CCWWGG 3 cut(s) 167, 224, 796
Eco24I GRGCYC 2 cut(s) 491, 759
Eco47I GGWCC 2 cut(s) 229, 273
Eco53kI GAGCTC 1 cut(s) 489
Eco72I CACGTG 1 cut(s) 862
Eco88I CYCGRG 4 cut(s) 496, 602, 719, 943
EcoICRI GAGCTC 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 1029
EcoT14I CCWWGG 3 cut(s) 167, 224, 796
EcoT38I GRGCYC 2 cut(s) 491, 759
ErhI CCWWGG 3 cut(s) 167, 224, 796
FaeI CATG 1 cut(s) 988
FaiI YATR 7 cut(s) 97, 154, 360, 401, 419, 834, 986
FaqI GGGAC 2 cut(s) 242, 821
FatI CATG 1 cut(s) 984
Fnu4HI GCNGC 8 cut(s) 44, 442, 556, 644, 677, 809, 872, 875
FokI GGATG 2 cut(s) 467, 895
FriOI GRGCYC 2 cut(s) 491, 759
Fsp4HI GCNGC 8 cut(s) 44, 442, 556, 644, 677, 809, 872, 875
FspAI RTGCGCAY 1 cut(s) 989
FspBI CTAG 1 cut(s) 749
FspI TGCGCA 1 cut(s) 989
GlaI GCGC 4 cut(s) 348, 502, 807, 989
GluI GCNGC 8 cut(s) 44, 442, 556, 644, 677, 809, 872, 875
GsaI CCCAGC 2 cut(s) 114, 676
GsuI CTGGAG 1 cut(s) 475
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 5 cut(s) 256, 290, 1029, 1034, 1039
HhaI GCGC 4 cut(s) 349, 503, 808, 990
Hin1II CATG 1 cut(s) 988
Hin6I GCGC 4 cut(s) 347, 501, 806, 988
HinP1I GCGC 4 cut(s) 347, 501, 806, 988
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 8 cut(s) 336, 648, 706, 715, 745, 866, 918, 1023
HphI GGTGA 3 cut(s) 152, 209, 304
Hpy166II GTNNAC 3 cut(s) 522, 917, 975
Hpy188I TCNGA 7 cut(s) 102, 327, 375, 540, 574, 705, 923
Hpy188III TCNNGA 2 cut(s) 340, 945
Hpy8I GTNNAC 3 cut(s) 522, 917, 975
Hpy99I CGWCG 3 cut(s) 74, 571, 599
HpyAV CCTTC 8 cut(s) 97, 196, 280, 314, 337, 435, 849, 882
HpyCH4IV ACGT 4 cut(s) 534, 597, 861, 1004
HpyCH4V TGCA 5 cut(s) 130, 403, 558, 769, 910
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 438, 561, 749, 985
HpyF3I CTNAG 4 cut(s) 30, 35, 920, 927
HpySE526I ACGT 4 cut(s) 534, 597, 861, 1004
Hsp92II CATG 1 cut(s) 988
HspAI GCGC 4 cut(s) 347, 501, 806, 988
KpnI GGTACC 2 cut(s) 118, 300
Kzo9I GATC 3 cut(s) 163, 306, 843
LguI GCTCTTC 2 cut(s) 479, 586
LmnI GCTCC 3 cut(s) 76, 376, 494
Lsp1109I GCAGC 4 cut(s) 453, 542, 688, 820
MaeI CTAG 1 cut(s) 749
MaeII ACGT 4 cut(s) 534, 597, 861, 1004
MaeIII GTNAC 1 cut(s) 249
MalI GATC 3 cut(s) 165, 308, 845
MboI GATC 3 cut(s) 163, 306, 843
MboII GAAGA 3 cut(s) 496, 573, 625
MfeI CAATTG 1 cut(s) 391
MhlI GDGCHC 5 cut(s) 491, 581, 603, 759, 1019
MluCI AATT 5 cut(s) 119, 144, 391, 730, 814
MlyI GAGTC 2 cut(s) 754, 912
MmeI TCCRAC 4 cut(s) 80, 305, 313, 432
MroXI GAANNNNTTC 3 cut(s) 534, 777, 971
MseI TTAA 1 cut(s) 660
MspCI CTTAAG 1 cut(s) 659
MspR9I CCNGG 8 cut(s) 48, 271, 277, 754, 764, 1031, 1036, 1041
MunI CAATTG 1 cut(s) 391
MvaI CCWGG 1 cut(s) 1031
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 5 cut(s) 40, 438, 561, 749, 985
NciI CCSGG 7 cut(s) 48, 271, 277, 754, 764, 1036, 1041
NdeII GATC 3 cut(s) 163, 306, 843
NlaIII CATG 1 cut(s) 988
NlaIV GGNNCC 6 cut(s) 116, 230, 274, 298, 382, 1018
NmuCI GTSAC 1 cut(s) 249
NsbI TGCGCA 1 cut(s) 989
NspI RCATGY 1 cut(s) 988
PaeR7I CTCGAG 2 cut(s) 496, 602
PciSI GCTCTTC 2 cut(s) 479, 586
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PdmI GAANNNNTTC 3 cut(s) 534, 777, 971
PfeI GAWTC 6 cut(s) 336, 648, 706, 715, 866, 1023
Pfl23II CGTACG 1 cut(s) 1005
PinAI ACCGGT 1 cut(s) 293
PkrI GCNGC 8 cut(s) 45, 443, 557, 645, 678, 810, 873, 876
PleI GAGTC 2 cut(s) 753, 912
PmaCI CACGTG 1 cut(s) 862
PmlI CACGTG 1 cut(s) 862
PpsI GAGTC 2 cut(s) 753, 912
Ppu21I YACGTR 2 cut(s) 862, 1005
Psp124BI GAGCTC 1 cut(s) 491
Psp1406I AACGTT 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 1029
PspCI CACGTG 1 cut(s) 862
PspFI CCCAGC 2 cut(s) 110, 672
PspGI CCWGG 1 cut(s) 1029
PspLI CGTACG 1 cut(s) 1005
PspN4I GGNNCC 6 cut(s) 116, 230, 274, 298, 382, 1018
PspPI GGNCC 4 cut(s) 229, 255, 273, 1037
PspXI VCTCGAGB 2 cut(s) 496, 602
PstNI CAGNNNCTG 1 cut(s) 709
RsaI GTAC 7 cut(s) 116, 239, 281, 298, 410, 507, 1007
RsaNI GTAC 7 cut(s) 115, 238, 280, 297, 409, 506, 1006
SacI GAGCTC 1 cut(s) 491
SapI GCTCTTC 2 cut(s) 479, 586
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 8 cut(s) 44, 442, 556, 644, 677, 809, 872, 875
Sau3AI GATC 3 cut(s) 163, 306, 843
Sau96I GGNCC 4 cut(s) 229, 255, 273, 1037
SchI GAGTC 2 cut(s) 754, 912
ScrFI CCNGG 8 cut(s) 48, 271, 277, 754, 764, 1031, 1036, 1041
SduI GDGCHC 5 cut(s) 491, 581, 603, 759, 1019
Sfr274I CTCGAG 2 cut(s) 496, 602
SinI GGWCC 2 cut(s) 229, 273
SlaI CTCGAG 2 cut(s) 496, 602
SmlI CTYRAG 3 cut(s) 496, 602, 659
SmoI CTYRAG 3 cut(s) 496, 602, 659
Sse9I AATT 5 cut(s) 119, 144, 391, 730, 814
SsiI CCGC 5 cut(s) 44, 412, 644, 872, 875
SspMI CTAG 1 cut(s) 749
SstI GAGCTC 1 cut(s) 491
StyD4I CCNGG 8 cut(s) 46, 269, 275, 752, 762, 1029, 1034, 1039
StyI CCWWGG 3 cut(s) 167, 224, 796
TaiI ACGT 4 cut(s) 537, 600, 864, 1007
TaqI TCGA 7 cut(s) 162, 446, 497, 603, 735, 842, 965
TasI AATT 5 cut(s) 119, 144, 391, 730, 814
TatI WGTACW 1 cut(s) 505
TauI GCSGC 4 cut(s) 46, 646, 874, 877
TfiI GAWTC 6 cut(s) 336, 648, 706, 715, 866, 1023
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 1 cut(s) 1063
TseFI GTSAC 1 cut(s) 249
TseI GCWGC 4 cut(s) 441, 555, 676, 808
Tsp45I GTSAC 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 471
TspRI CASTG 1 cut(s) 1063
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 229, 273
XceI RCATGY 1 cut(s) 988
XhoI CTCGAG 2 cut(s) 496, 602
XmnI GAANNNNTTC 3 cut(s) 534, 777, 971
XspI CTAG 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.