Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0013046

Physical Location & Seq

Genomic Coordinates Reverse (-)

30738599 .. 30740479

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1222700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAACGTATTTATCCCCCTTCCCTGCTCCGCTATATATATAACCGCCATATCTCGGAAATCGAAAAAAAAAGAAAAAGAAATAATATTTGGGGATTTGGAAACTTCAGAAATTTCAAATCTCTCTCTCCCCTCTGTTTCAACTTCTCTTTCTCTCGAATCTTCCCGATCCAGTTTCGAGCTCGGAAATTTGTCACCGGAATAATGGGTGTGCCGGAAACCGACCCTCTTTCTCAGCTGAGCCTGCCGCCGGGGTTTCGATTCTATCCGACGGACGAGGAGCTTCTGGTTCAGTACCTCTGCCGCAAGGTTGCTGGGTACCAATTCAATCTGCAAATAATTGCTGAAATCGATCTTTACAAGTTTGATCCTTGGGTTTTACCAAGCAAAGCGATATTTGGGGAAAAAGAATGGTACTTTTTCAGTCCGAGGGACCGGAAATACCCAAATGGGTCGCGACCCAATCGGGTTGCTGGGACCGGGTACTGGAAGGCAACTGGAACTGATAAGGTTATTACAACTGAAGGTAGAAAAGTTGGGATTAAAAAAGCACTTGTTTTCTATGTGGGAAAAGCCCCAAAAGGCACCAAGACCAACTGGATTATGCACGAGTATCGCCTCATCGAGCCCTCTCGCAAAAATGGCAGCTCCAAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCAGCAGCTCAGCAGCGGCTGCGGCAGCGGCAGCACAGAAGCCCGTTACGAGCGTTTCGAGCAAAGAGCACAGCAACGGCTCGTCGTCATCGTGCTCTTCTCAGCTCGACGACGTGCTCGAGTGGTTGCCGGATATTGACGATCGGAACTTCACCCTGCCCCGGATAAACTCGCTCAAGACGCTGCTGCAGCAGCAGGAGGACAGCAAGATTAATTTTCAGAACACCGGTTCCGGGAATTTCGACTGGGCGACTCTCGCCGGGCTCAACTCGGCGCCAGAACTCAATCTCAATAATCAGACTCAGCAAGGCCAAGGACAAATGAATTTCAATTTCAATAACAATGACGTGCCTCCCTTCAACCCCACCTCTCTGCCACGTGGAATGGCCGCCGGAGAGTTTGGGAAGACGGCGGAGGAGGAGGTGCAGAGCGGACTCAGAACTCAGCGGGTGGATAACTCCAACTTCTTCCAGCAACACTCTCAGAACGTTTGTTACCCGGTCCGGCCCAGCGGGTTCGGGCATTGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

408

Amino Acids

46.34

Weight (kDa)

9.51

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	83 - 207	5.8e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca	FvH4_3g20690
malus_domestica	MD03G1222700.v1.1
prunus_persica	Prupe.4G186800_v2.0.a1
pyrus_communis	pycom03g17140 pycom11g21210
rosa_chinensis	RchiOBHm_Chr5g0034761
rosa_multiflora	Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii	Rroxscaffold_1G00045540
rosa_rugosa	Rorug05G0148400
rosa_samantha	Rh5AG240800 Rh5CG271800
rosa_wichuraiana	Rw5G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	3 cut(s)	318, 584, 964
AccBSI	CCGCTC	1 cut(s)	1122
AccII	CGCG	1 cut(s)	457
AclI	AACGTT	1 cut(s)	1179
AclWI	GGATC	2 cut(s)	163, 362
AcoI	YGGCCR	1 cut(s)	1077
AcsI	RAATTY	4 cut(s)	112, 188, 928, 1015
AcuI	CTGAAG	2 cut(s)	91, 543
AcvI	CACGTG	1 cut(s)	1070
AcyI	GRCGYC	1 cut(s)	965
AfaI	GTAC	4 cut(s)	296, 320, 416, 485
AfiI	CCNNNNNNNGG	5 cut(s)	55, 250, 486, 852, 924
AgeI	ACCGGT	1 cut(s)	917
AgsI	TTSAA	6 cut(s)	118, 142, 328, 1021, 1027, 1051
AjiI	CACGTC	2 cut(s)	805, 1039
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AloI	GAACNNNNNNTCC	2 cut(s)	905, 937
AluBI	AGCT	6 cut(s)	182, 238, 283, 648, 699, 796
AluI	AGCT	6 cut(s)	182, 238, 283, 648, 699, 796
Alw21I	GWGCWC	4 cut(s)	184, 762, 788, 810
AlwI	GGATC	2 cut(s)	163, 362
AlwNI	CAGNNNCTG	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	809
AoxI	GGCC	3 cut(s)	1000, 1077, 1196
ApoI	RAATTY	4 cut(s)	112, 188, 928, 1015
AseI	ATTAAT	1 cut(s)	903
AsiGI	ACCGGT	1 cut(s)	917
Asp718I	GGTACC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	967
AspS9I	GGNCC	4 cut(s)	433, 477, 1192, 1197
AsuC2I	CCSGG	6 cut(s)	252, 481, 853, 925, 952, 1190
AsuHPI	GGTGA	2 cut(s)	187, 835
AvaI	CYCGRG	1 cut(s)	809
AvaII	GGWCC	3 cut(s)	433, 477, 1192
BanI	GGYRCC	3 cut(s)	318, 584, 964
BanII	GRGCYC	3 cut(s)	184, 630, 957
BauI	CACGAG	1 cut(s)	608
BbrPI	CACGTG	1 cut(s)	1070
BbsI	GAAGAC	1 cut(s)	1103
Bbv12I	GWGCWC	4 cut(s)	184, 762, 788, 810
BceAI	ACGGC	2 cut(s)	784, 1116
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BcnI	CCSGG	6 cut(s)	252, 481, 853, 925, 952, 1190
BfmI	CTRYAG	1 cut(s)	878
BfoI	RGCGCY	1 cut(s)	968
BlpI	GCTNAGC	2 cut(s)	239, 700
Bme1390I	CCNGG	6 cut(s)	252, 481, 853, 925, 952, 1190
Bme18I	GGWCC	3 cut(s)	433, 477, 1192
BmeT110I	CYCGRG	1 cut(s)	809
BmgBI	CACGTC	2 cut(s)	805, 1039
BmgT120I	GGNCC	4 cut(s)	433, 477, 1192, 1197
BmiI	GGNNCC	6 cut(s)	320, 434, 478, 586, 922, 966
BmrFI	CCNGG	6 cut(s)	252, 481, 853, 925, 952, 1190
BmrI	ACTGGG	1 cut(s)	946
BmuI	ACTGGG	1 cut(s)	946
BpiI	GAAGAC	1 cut(s)	1103
Bpu1102I	GCTNAGC	2 cut(s)	239, 700
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	6 cut(s)	252, 481, 853, 925, 952, 1190
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	1070
BsaHI	GRCGYC	1 cut(s)	965
BsaJI	CCNNGG	5 cut(s)	251, 371, 428, 851, 1003
BsaWI	WCCGGW	3 cut(s)	197, 435, 917
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 250, 486, 852, 924
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	5 cut(s)	172, 491, 502, 602, 941
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	5 cut(s)	251, 371, 428, 851, 1003
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	5 cut(s)	55, 250, 486, 852, 924
BseMII	CTCAG	8 cut(s)	230, 248, 714, 806, 1007, 1141, 1148, 1187
BseNI	ACTGG	5 cut(s)	172, 491, 502, 602, 941
BseRI	GAGGAG	3 cut(s)	293, 1121, 1124
BseYI	CCCAGC	3 cut(s)	314, 473, 1199
BsgI	GTGCAG	1 cut(s)	1136
Bsh1236I	CGCG	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	3 cut(s)	1002, 1079, 1198
BshNI	GGYRCC	3 cut(s)	318, 584, 964
BshTI	ACCGGT	1 cut(s)	917
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	835
BsiHKAI	GWGCWC	4 cut(s)	184, 762, 788, 810
BsiHKCI	CYCGRG	1 cut(s)	809
BslFI	GGGAC	2 cut(s)	446, 490
BslI	CCNNNNNNNGG	5 cut(s)	55, 250, 486, 852, 924
BsmFI	GGGAC	2 cut(s)	446, 490
BsnI	GGCC	3 cut(s)	1002, 1079, 1198
BsoBI	CYCGRG	1 cut(s)	809
Bsp1286I	GDGCHC	6 cut(s)	184, 630, 762, 788, 810, 957
Bsp143I	GATC	4 cut(s)	168, 352, 367, 832
Bsp1720I	GCTNAGC	2 cut(s)	239, 700
Bsp68I	TCGCGA	1 cut(s)	457
BspANI	GGCC	3 cut(s)	1002, 1079, 1198
BspCNI	CTCAG	8 cut(s)	231, 247, 713, 805, 1006, 1140, 1147, 1186
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	457
BspLI	GGNNCC	6 cut(s)	320, 434, 478, 586, 922, 966
BspMAI	CTGCAG	1 cut(s)	882
BspPI	GGATC	2 cut(s)	163, 362
BspQI	GCTCTTC	2 cut(s)	683, 793
BspT107I	GGYRCC	3 cut(s)	318, 584, 964
BsrBI	CCGCTC	1 cut(s)	1122
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	5 cut(s)	172, 491, 502, 602, 941
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	5 cut(s)	251, 371, 428, 851, 1003
BssMI	GATC	4 cut(s)	168, 352, 367, 832
BssNI	GRCGYC	1 cut(s)	965
BssSI	CACGAG	1 cut(s)	608
BssT1I	CCWWGG	2 cut(s)	371, 1003
Bst2BI	CACGAG	1 cut(s)	608
Bst6I	CTCTTC	2 cut(s)	683, 793
BstACI	GRCGYC	1 cut(s)	965
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstBAI	YACGTR	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	8 cut(s)	234, 239, 700, 792, 993, 1127, 1134, 1173
BstF5I	GGATG	1 cut(s)	664
BstFNI	CGCG	1 cut(s)	457
BstH2I	RGCGCY	1 cut(s)	968
BstHHI	GCGC	1 cut(s)	967
BstKTI	GATC	4 cut(s)	171, 355, 370, 835
BstMBI	GATC	4 cut(s)	168, 352, 367, 832
BstMCI	CGRYCG	1 cut(s)	835
BstSCI	CCNGG	6 cut(s)	250, 479, 851, 923, 950, 1188
BstSFI	CTRYAG	1 cut(s)	878
BstUI	CGCG	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	1103
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	1002, 1079, 1198
BsuTUI	ATCGAT	1 cut(s)	351
BtrI	CACGTC	2 cut(s)	805, 1039
BtsCI	GGATG	1 cut(s)	664
BtuMI	TCGCGA	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	245
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	1 cut(s)	967
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	4 cut(s)	433, 477, 1192, 1197
ClaI	ATCGAT	1 cut(s)	351
CpoI	CGGWCCG	1 cut(s)	1192
CseI	GACGC	1 cut(s)	880
Csp6I	GTAC	4 cut(s)	295, 319, 415, 484
CspAI	ACCGGT	1 cut(s)	917
CspI	CGGWCCG	1 cut(s)	1192
CviQI	GTAC	4 cut(s)	295, 319, 415, 484
DdeI	CTNAG	8 cut(s)	234, 239, 700, 792, 993, 1127, 1134, 1173
DinI	GGCGCC	1 cut(s)	966
DpnI	GATC	4 cut(s)	170, 354, 369, 834
DpnII	GATC	4 cut(s)	168, 352, 367, 832
EaeI	YGGCCR	1 cut(s)	1077
Eam1104I	CTCTTC	2 cut(s)	683, 793
EarI	CTCTTC	2 cut(s)	683, 793
EciI	GGCGGA	1 cut(s)	1118
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	2 cut(s)	371, 1003
Eco24I	GRGCYC	3 cut(s)	184, 630, 957
Eco47I	GGWCC	3 cut(s)	433, 477, 1192
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	91, 543
Eco72I	CACGTG	1 cut(s)	1070
Eco88I	CYCGRG	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	182
EcoT14I	CCWWGG	2 cut(s)	371, 1003
EcoT38I	GRGCYC	3 cut(s)	184, 630, 957
EgeI	GGCGCC	1 cut(s)	966
EheI	GGCGCC	1 cut(s)	966
ErhI	CCWWGG	2 cut(s)	371, 1003
FaiI	YATR	7 cut(s)	36, 38, 40, 42, 51, 564, 605
FaqI	GGGAC	2 cut(s)	446, 490
FauI	CCCGC	2 cut(s)	1131, 1196
FokI	GGATG	1 cut(s)	671
FriOI	GRGCYC	3 cut(s)	184, 630, 957
GlaI	GCGC	1 cut(s)	966
GsaI	CCCAGC	3 cut(s)	318, 477, 1203
HaeII	RGCGCY	1 cut(s)	968
HaeIII	GGCC	3 cut(s)	1002, 1079, 1198
HgaI	GACGC	1 cut(s)	880
HhaI	GCGC	1 cut(s)	967
Hin1I	GRCGYC	1 cut(s)	965
Hin6I	GCGC	1 cut(s)	965
HinP1I	GCGC	1 cut(s)	965
HinfI	GANTC	5 cut(s)	159, 261, 943, 991, 1125
HphI	GGTGA	2 cut(s)	187, 835
Hpy188III	TCNNGA	4 cut(s)	156, 166, 456, 868
Hpy99I	CGWCG	4 cut(s)	274, 778, 803, 806
HpyAV	CCTTC	4 cut(s)	30, 484, 518, 1057
HpyCH4IV	ACGT	5 cut(s)	7, 804, 1038, 1069, 1179
HpyCH4V	TGCA	4 cut(s)	334, 607, 880, 1117
HpyF3I	CTNAG	8 cut(s)	234, 239, 700, 792, 993, 1127, 1134, 1173
HpySE526I	ACGT	5 cut(s)	7, 804, 1038, 1069, 1179
Hsp92I	GRCGYC	1 cut(s)	965
HspAI	GCGC	1 cut(s)	965
KasI	GGCGCC	1 cut(s)	964
KpnI	GGTACC	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	168, 352, 367, 832
LguI	GCTCTTC	2 cut(s)	683, 793
LmnI	GCTCC	3 cut(s)	33, 280, 653
MaeII	ACGT	5 cut(s)	7, 804, 1038, 1069, 1179
MaeIII	GTNAC	3 cut(s)	193, 736, 1184
MalI	GATC	4 cut(s)	170, 354, 369, 834
MbiI	CCGCTC	1 cut(s)	1122
MboI	GATC	4 cut(s)	168, 352, 367, 832
MboII	GAAGA	5 cut(s)	154, 700, 780, 1108, 1150
MhlI	GDGCHC	6 cut(s)	184, 630, 762, 788, 810, 957
MluCI	AATT	8 cut(s)	112, 188, 323, 339, 904, 928, 1015, 1021
Mly113I	GGCGCC	1 cut(s)	965
MlyI	GAGTC	3 cut(s)	937, 985, 1119
MmeI	TCCRAC	3 cut(s)	293, 636, 1176
MseI	TTAA	2 cut(s)	543, 903
MspA1I	CMGCKG	5 cut(s)	238, 707, 719, 1138, 1203
MspR9I	CCNGG	6 cut(s)	252, 481, 853, 925, 952, 1190
MvnI	CGCG	1 cut(s)	457
NarI	GGCGCC	1 cut(s)	965
NciI	CCSGG	6 cut(s)	252, 481, 853, 925, 952, 1190
NdeII	GATC	4 cut(s)	168, 352, 367, 832
NlaIV	GGNNCC	6 cut(s)	320, 434, 478, 586, 922, 966
NmeAIII	GCCGAG	1 cut(s)	941
NmuCI	GTSAC	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	457
PaeR7I	CTCGAG	1 cut(s)	809
PciSI	GCTCTTC	2 cut(s)	683, 793
PcsI	WCGNNNNNNNCGW	3 cut(s)	746, 779, 807
PfeI	GAWTC	2 cut(s)	159, 261
PfoI	TCCNGGA	1 cut(s)	923
PinAI	ACCGGT	1 cut(s)	917
Ple19I	CGATCG	1 cut(s)	835
PleI	GAGTC	3 cut(s)	937, 985, 1119
PluTI	GGCGCC	1 cut(s)	968
PmaCI	CACGTG	1 cut(s)	1070
PmlI	CACGTG	1 cut(s)	1070
PpsI	GAGTC	3 cut(s)	937, 985, 1119
Ppu21I	YACGTR	1 cut(s)	1070
PshBI	ATTAAT	1 cut(s)	903
Psp124BI	GAGCTC	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	1179
PspCI	CACGTG	1 cut(s)	1070
PspFI	CCCAGC	3 cut(s)	314, 473, 1199
PspN4I	GGNNCC	6 cut(s)	320, 434, 478, 586, 922, 966
PspPI	GGNCC	4 cut(s)	433, 477, 1192, 1197
PspXI	VCTCGAGB	1 cut(s)	809
PsrI	GAACNNNNNNTAC	2 cut(s)	1169, 1201
PstI	CTGCAG	1 cut(s)	882
PstNI	CAGNNNCTG	1 cut(s)	710
PvuI	CGATCG	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	238
RruI	TCGCGA	1 cut(s)	457
RsaI	GTAC	4 cut(s)	296, 320, 416, 485
RsaNI	GTAC	4 cut(s)	295, 319, 415, 484
Rsr2I	CGGWCCG	1 cut(s)	1192
RsrII	CGGWCCG	1 cut(s)	1192
SacI	GAGCTC	1 cut(s)	184
SapI	GCTCTTC	2 cut(s)	683, 793
SaqAI	TTAA	2 cut(s)	543, 903
Sau3AI	GATC	4 cut(s)	168, 352, 367, 832
Sau96I	GGNCC	4 cut(s)	433, 477, 1192, 1197
SchI	GAGTC	3 cut(s)	937, 985, 1119
ScrFI	CCNGG	6 cut(s)	252, 481, 853, 925, 952, 1190
SduI	GDGCHC	6 cut(s)	184, 630, 762, 788, 810, 957
SfcI	CTRYAG	1 cut(s)	878
SfoI	GGCGCC	1 cut(s)	966
Sfr274I	CTCGAG	1 cut(s)	809
SinI	GGWCC	3 cut(s)	433, 477, 1192
SlaI	CTCGAG	1 cut(s)	809
SmlI	CTYRAG	2 cut(s)	809, 866
SmoI	CTYRAG	2 cut(s)	809, 866
Sse9I	AATT	8 cut(s)	112, 188, 323, 339, 904, 928, 1015, 1021
SspDI	GGCGCC	1 cut(s)	964
SspI	AATATT	1 cut(s)	88
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	6 cut(s)	250, 479, 851, 923, 950, 1188
StyI	CCWWGG	2 cut(s)	371, 1003
TaiI	ACGT	5 cut(s)	10, 807, 1041, 1072, 1182
TasI	AATT	8 cut(s)	112, 188, 323, 339, 904, 928, 1015, 1021
TauI	GCSGC	6 cut(s)	250, 306, 710, 716, 722, 1082
TfiI	GAWTC	2 cut(s)	159, 261
Tru1I	TTAA	2 cut(s)	543, 903
Tru9I	TTAA	2 cut(s)	543, 903
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	675, 1028
TspGWI	ACGGA	1 cut(s)	287
VpaK11BI	GGWCC	3 cut(s)	433, 477, 1192
VspI	ATTAAT	1 cut(s)	903
XapI	RAATTY	4 cut(s)	112, 188, 928, 1015
XhoI	CTCGAG	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.