FvH4_3g20690
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013046
Physical Location & Seq
Forward (+)
13746253 .. 13748381
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20690.t1

Sequence Viewer

Length: 1065 bp
ATGGGCGTTCCGGAAACCGACCCGCTTTCCCAGCTGAGCTTGCCGCCGGGGTTTCGATTCTACCCTACCGACGAGGAGCTTCTGGTTCAGTATCTATGCCGGAAGGTTGCTGGGTACCAATTTAATCTTCAGATTATTGCTGAAATTGATCTCTACAAGTTCGATCCATGGGTTCTACCAAGCAAAGCGATTTTTGGTGAGAAGGAATGGTATTTTTTCAGTCCAAGGGACCGGAAGTACCCGAATGGGTCGAGGCCCAATCGGGTGGCCGGGTCCGGGTACTGGAAGGCCACCGGTACTGATAAGGTTATCACCACCGAAGGTCGGAAGGTCGGAATCAAGAAAGCGCTTGTGTTCTATGTCGGCAAAGCTCCCAAGGGGACCAAAACCAATTGGATTATGCACGAGTACCGCCTCATCGAGCCTTCACGAAAAAATGGCAGCTCCAAGTTGGATGAATGGGTTCTGTGCCGAATTTACAAGAAGAGCTCTAGCTCGAGCGCAATACAGAAGCCGATGATGGTGTCAAACGTCCCAAGCAAAGAACAAAGCTGTAACGGCTCGTCGTCTGAGTGCTCTTCCCAACTCGACGACGTCCTCGAATGGTTGCCTGAAATTGAGGACAGGTTCTTCACTCTGCCGCGAATCAACTCCCTCAAAACTCTACCGCAGCAACAAGAGGACACCAAGCTCAGTCTTCAGAATCTGGGTAATCTCGGGTCGGGCAACTTCGACTGGGCGAGCCTAGCCGGGCTCAACACGGTGCCGGAAGTTCCTCCCAACACCCAAGCTCAAGCACAAGCACAGATAAATTACAACAATGACGCTTATGTCCCTTCGATCCCACCTCTCTGCCACGTGGAGTCGCCGCCGGAGAGGATGAGAAGGCAAGCGGAGGAGGAGGTCCAGAGCGGACTTAGAACTCAGCGAGGCGAAAACTCAGGACTGTTCCAGCAGAACTCGAGCATGTTCACGCAAAGCATGTGTACCCCGATTGACACCTACGGATTGGGCTCCCGGTTCGGGATGACCGGGCCGGGTTTCAGCTTTGGCAGTGGAAAGTGA

Protein Analysis

355

Amino Acids

39.7

Weight (kDa)

8.4

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 139 2.8e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca FvH4_3g20690
malus_domestica MD03G1222700.v1.1
prunus_persica Prupe.4G186800_v2.0.a1
pyrus_communis pycom03g17140 pycom11g21210
rosa_chinensis RchiOBHm_Chr5g0034761
rosa_multiflora Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii Rroxscaffold_1G00045540
rosa_rugosa Rorug05G0148400
rosa_samantha Rh5AG240800 Rh5CG271800
rosa_wichuraiana Rw5G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 830
AatII GACGTC 1 cut(s) 597
Acc65I GGTACC 1 cut(s) 114
AccB1I GGYRCC 2 cut(s) 114, 763
AccBSI CCGCTC 1 cut(s) 912
AccII CGCG 1 cut(s) 643
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 8 cut(s) 23, 44, 412, 641, 668, 869, 893, 912
AclWI GGATC 2 cut(s) 158, 835
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 2 cut(s) 113, 683
AcvI CACGTG 1 cut(s) 859
AcyI GRCGYC 1 cut(s) 594
AfaI GTAC 6 cut(s) 116, 239, 281, 298, 410, 988
AfeI AGCGCT 1 cut(s) 348
AfiI CCNNNNNNNGG 4 cut(s) 276, 282, 324, 1023
AgeI ACCGGT 1 cut(s) 293
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
Alw21I GWGCWC 2 cut(s) 491, 578
AlwI GGATC 2 cut(s) 158, 835
AlwNI CAGNNNCTG 1 cut(s) 706
Ama87I CYCGRG 3 cut(s) 496, 716, 961
Aor13HI TCCGGA 1 cut(s) 10
Aor51HI AGCGCT 1 cut(s) 348
AoxI GGCC 4 cut(s) 254, 267, 288, 1034
ApeKI GCWGC 2 cut(s) 441, 670
ApoI RAATTY 1 cut(s) 474
AsiGI ACCGGT 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 462
Asp718I GGTACC 1 cut(s) 114
AspLEI GCGC 2 cut(s) 349, 503
AspS9I GGNCC 6 cut(s) 229, 255, 273, 381, 904, 1034
AsuC2I CCSGG 7 cut(s) 48, 271, 277, 751, 1018, 1033, 1038
AsuHPI GGTGA 2 cut(s) 209, 304
AvaI CYCGRG 3 cut(s) 496, 716, 961
AvaII GGWCC 4 cut(s) 229, 273, 381, 904
BanI GGYRCC 2 cut(s) 114, 763
BanII GRGCYC 3 cut(s) 491, 756, 1016
BauI CACGAG 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 689
Bbv12I GWGCWC 2 cut(s) 491, 578
BbvI GCAGC 2 cut(s) 453, 682
BccI CCATC 1 cut(s) 514
BceAI ACGGC 1 cut(s) 574
BcnI CCSGG 7 cut(s) 48, 271, 277, 751, 1018, 1033, 1038
BfaI CTAG 2 cut(s) 492, 746
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 5 cut(s) 44, 442, 641, 671, 869
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 5 cut(s) 45, 443, 642, 672, 870
Bme1390I CCNGG 7 cut(s) 48, 271, 277, 751, 1018, 1033, 1038
Bme18I GGWCC 4 cut(s) 229, 273, 381, 904
BmeT110I CYCGRG 3 cut(s) 496, 716, 961
BmgT120I GGNCC 6 cut(s) 229, 255, 273, 381, 904, 1034
BmiI GGNNCC 6 cut(s) 116, 230, 274, 382, 765, 1015
BmrFI CCNGG 7 cut(s) 48, 271, 277, 751, 1018, 1033, 1038
BmrI ACTGGG 1 cut(s) 745
BmuI ACTGGG 1 cut(s) 745
BpiI GAAGAC 1 cut(s) 689
Bpu1102I GCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 777
BpuMI CCSGG 7 cut(s) 48, 271, 277, 751, 1018, 1033, 1038
BsaAI YACGTR 1 cut(s) 859
BsaHI GRCGYC 1 cut(s) 594
BsaJI CCNNGG 4 cut(s) 47, 167, 224, 375
BsaWI WCCGGW 3 cut(s) 10, 231, 293
Bsc4I CCNNNNNNNGG 4 cut(s) 276, 282, 324, 1023
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 287, 740
BseAI TCCGGA 1 cut(s) 10
BseDI CCNNGG 4 cut(s) 47, 167, 224, 375
BseGI GGATG 3 cut(s) 460, 885, 1032
BseLI CCNNNNNNNGG 4 cut(s) 276, 282, 324, 1023
BseMII CTCAG 5 cut(s) 26, 561, 706, 938, 954
BseNI ACTGG 2 cut(s) 287, 740
BseRI GAGGAG 3 cut(s) 89, 911, 914
BseXI GCAGC 2 cut(s) 453, 682
BseYI CCCAGC 2 cut(s) 30, 110
Bsh1236I CGCG 1 cut(s) 643
BshFI GGCC 4 cut(s) 256, 269, 290, 1036
BshNI GGYRCC 2 cut(s) 114, 763
BshTI ACCGGT 1 cut(s) 293
BsiHKAI GWGCWC 2 cut(s) 491, 578
BsiHKCI CYCGRG 3 cut(s) 496, 716, 961
BslFI GGGAC 4 cut(s) 242, 394, 518, 818
BslI CCNNNNNNNGG 4 cut(s) 276, 282, 324, 1023
BsmFI GGGAC 4 cut(s) 242, 394, 518, 818
BsnI GGCC 4 cut(s) 256, 269, 290, 1036
BsoBI CYCGRG 3 cut(s) 496, 716, 961
Bsp1286I GDGCHC 4 cut(s) 491, 578, 756, 1016
Bsp13I TCCGGA 1 cut(s) 10
Bsp143I GATC 3 cut(s) 148, 163, 840
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 8 cut(s) 23, 44, 412, 641, 668, 869, 893, 912
BspANI GGCC 4 cut(s) 256, 269, 290, 1036
BspCNI CTCAG 5 cut(s) 27, 562, 705, 937, 953
BspEI TCCGGA 1 cut(s) 10
BspFNI CGCG 1 cut(s) 643
BspLI GGNNCC 6 cut(s) 116, 230, 274, 382, 765, 1015
BspPI GGATC 2 cut(s) 158, 835
BspQI GCTCTTC 2 cut(s) 479, 583
BspT107I GGYRCC 2 cut(s) 114, 763
BsrBI CCGCTC 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 2 cut(s) 287, 740
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 4 cut(s) 47, 167, 224, 375
BssMI GATC 3 cut(s) 148, 163, 840
BssNI GRCGYC 1 cut(s) 594
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 3 cut(s) 167, 224, 375
Bst2BI CACGAG 1 cut(s) 404
Bst4CI ACNGT 2 cut(s) 763, 948
Bst6I CTCTTC 2 cut(s) 479, 583
BstACI GRCGYC 1 cut(s) 594
BstBAI YACGTR 1 cut(s) 859
BstC8I GCNNGC 3 cut(s) 41, 742, 891
BstDEI CTNAG 6 cut(s) 35, 570, 692, 917, 924, 940
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 460, 885, 1032
BstFNI CGCG 1 cut(s) 643
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 2 cut(s) 349, 503
BstKTI GATC 3 cut(s) 151, 166, 843
BstMBI GATC 3 cut(s) 148, 163, 840
BstMWI GCNNNNNNNGC 4 cut(s) 31, 40, 558, 746
BstNSI RCATGY 2 cut(s) 970, 985
BstSCI CCNGG 7 cut(s) 46, 269, 275, 749, 1016, 1031, 1036
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 2 cut(s) 453, 682
BstV2I GAAGAC 1 cut(s) 689
BstXI CCANNNNNNTGG 1 cut(s) 265
BsuRI GGCC 4 cut(s) 256, 269, 290, 1036
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 3 cut(s) 460, 885, 1032
BtsI GCAGTG 1 cut(s) 1060
BtsIMutI CAGTG 1 cut(s) 1060
Cac8I GCNNGC 3 cut(s) 41, 742, 891
CaiI CAGNNNCTG 1 cut(s) 706
CfoI GCGC 2 cut(s) 349, 503
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 6 cut(s) 229, 255, 273, 381, 904, 1034
CseI GACGC 1 cut(s) 833
Csp6I GTAC 6 cut(s) 115, 238, 280, 297, 409, 987
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 3 cut(s) 168, 967, 982
CviQI GTAC 6 cut(s) 115, 238, 280, 297, 409, 987
DdeI CTNAG 6 cut(s) 35, 570, 692, 917, 924, 940
DpnI GATC 3 cut(s) 150, 165, 842
DpnII GATC 3 cut(s) 148, 163, 840
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 479, 583
EarI CTCTTC 2 cut(s) 479, 583
Ecl136II GAGCTC 1 cut(s) 489
Eco130I CCWWGG 3 cut(s) 167, 224, 375
Eco24I GRGCYC 3 cut(s) 491, 756, 1016
Eco47I GGWCC 4 cut(s) 229, 273, 381, 904
Eco47III AGCGCT 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 489
Eco57I CTGAAG 2 cut(s) 113, 683
Eco72I CACGTG 1 cut(s) 859
Eco88I CYCGRG 3 cut(s) 496, 716, 961
EcoICRI GAGCTC 1 cut(s) 489
EcoT14I CCWWGG 3 cut(s) 167, 224, 375
EcoT38I GRGCYC 3 cut(s) 491, 756, 1016
ErhI CCWWGG 3 cut(s) 167, 224, 375
FaeI CATG 3 cut(s) 171, 970, 985
FaiI YATR 7 cut(s) 97, 169, 360, 401, 831, 968, 983
FaqI GGGAC 4 cut(s) 242, 394, 518, 818
FatI CATG 3 cut(s) 167, 966, 981
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 5 cut(s) 44, 442, 641, 671, 869
FokI GGATG 3 cut(s) 467, 892, 1039
FriOI GRGCYC 3 cut(s) 491, 756, 1016
Fsp4HI GCNGC 5 cut(s) 44, 442, 641, 671, 869
FspBI CTAG 2 cut(s) 492, 746
GlaI GCGC 2 cut(s) 348, 502
GluI GCNGC 5 cut(s) 44, 442, 641, 671, 869
GsaI CCCAGC 2 cut(s) 34, 114
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 4 cut(s) 256, 269, 290, 1036
HgaI GACGC 1 cut(s) 833
HhaI GCGC 2 cut(s) 349, 503
Hin1I GRCGYC 1 cut(s) 594
Hin1II CATG 3 cut(s) 171, 970, 985
Hin6I GCGC 2 cut(s) 347, 501
HinP1I GCGC 2 cut(s) 347, 501
HinfI GANTC 5 cut(s) 57, 336, 645, 703, 863
HphI GGTGA 2 cut(s) 209, 304
Hpy166II GTNNAC 2 cut(s) 972, 987
Hpy188I TCNGA 5 cut(s) 132, 327, 335, 571, 702
Hpy188III TCNNGA 6 cut(s) 11, 340, 429, 907, 942, 1024
Hpy8I GTNNAC 2 cut(s) 972, 987
Hpy99I CGWCG 4 cut(s) 74, 568, 593, 596
HpyAV CCTTC 8 cut(s) 97, 196, 280, 314, 322, 435, 846, 879
HpyCH4III ACNGT 2 cut(s) 763, 948
HpyCH4IV ACGT 3 cut(s) 531, 594, 858
HpyCH4V TGCA 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 40, 558, 746
HpyF3I CTNAG 6 cut(s) 35, 570, 692, 917, 924, 940
HpySE526I ACGT 3 cut(s) 531, 594, 858
Hsp92I GRCGYC 1 cut(s) 594
Hsp92II CATG 3 cut(s) 171, 970, 985
HspAI GCGC 2 cut(s) 347, 501
Kpn2I TCCGGA 1 cut(s) 10
KpnI GGTACC 1 cut(s) 118
Kzo9I GATC 3 cut(s) 148, 163, 840
LguI GCTCTTC 2 cut(s) 479, 583
LmnI GCTCC 4 cut(s) 76, 376, 449, 1019
Lsp1109I GCAGC 2 cut(s) 453, 682
MaeI CTAG 2 cut(s) 492, 746
MaeII ACGT 3 cut(s) 531, 594, 858
MaeIII GTNAC 1 cut(s) 554
MalI GATC 3 cut(s) 150, 165, 842
MbiI CCGCTC 1 cut(s) 912
MboI GATC 3 cut(s) 148, 163, 840
MboII GAAGA 5 cut(s) 119, 496, 570, 622, 689
MfeI CAATTG 1 cut(s) 391
MhlI GDGCHC 4 cut(s) 491, 578, 756, 1016
MluCI AATT 6 cut(s) 119, 144, 391, 474, 615, 811
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 3 cut(s) 305, 313, 432
MroI TCCGGA 1 cut(s) 10
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 7 cut(s) 48, 271, 277, 751, 1018, 1033, 1038
MunI CAATTG 1 cut(s) 391
MvnI CGCG 1 cut(s) 643
MwoI GCNNNNNNNGC 4 cut(s) 31, 40, 558, 746
NciI CCSGG 7 cut(s) 48, 271, 277, 751, 1018, 1033, 1038
NcoI CCATGG 1 cut(s) 167
NdeII GATC 3 cut(s) 148, 163, 840
NlaIII CATG 3 cut(s) 171, 970, 985
NlaIV GGNNCC 6 cut(s) 116, 230, 274, 382, 765, 1015
NspI RCATGY 2 cut(s) 970, 985
PaeR7I CTCGAG 2 cut(s) 496, 961
PciSI GCTCTTC 2 cut(s) 479, 583
PcsI WCGNNNNNNNCGW 1 cut(s) 597
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 4 cut(s) 57, 336, 645, 703
PflFI GACNNNGTC 1 cut(s) 593
PinAI ACCGGT 1 cut(s) 293
PkrI GCNGC 5 cut(s) 45, 443, 642, 672, 870
PleI GAGTC 1 cut(s) 871
PmaCI CACGTG 1 cut(s) 859
PmlI CACGTG 1 cut(s) 859
PpsI GAGTC 1 cut(s) 871
Ppu21I YACGTR 1 cut(s) 859
Psp124BI GAGCTC 1 cut(s) 491
PspCI CACGTG 1 cut(s) 859
PspFI CCCAGC 2 cut(s) 30, 110
PspN4I GGNNCC 6 cut(s) 116, 230, 274, 382, 765, 1015
PspPI GGNCC 6 cut(s) 229, 255, 273, 381, 904, 1034
PspXI VCTCGAGB 2 cut(s) 496, 961
PstNI CAGNNNCTG 1 cut(s) 706
PsyI GACNNNGTC 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 6 cut(s) 116, 239, 281, 298, 410, 988
RsaNI GTAC 6 cut(s) 115, 238, 280, 297, 409, 987
SacI GAGCTC 1 cut(s) 491
SapI GCTCTTC 2 cut(s) 479, 583
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 5 cut(s) 44, 442, 641, 671, 869
Sau3AI GATC 3 cut(s) 148, 163, 840
Sau96I GGNCC 6 cut(s) 229, 255, 273, 381, 904, 1034
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 7 cut(s) 48, 271, 277, 751, 1018, 1033, 1038
SduI GDGCHC 4 cut(s) 491, 578, 756, 1016
Sfr274I CTCGAG 2 cut(s) 496, 961
SinI GGWCC 4 cut(s) 229, 273, 381, 904
SlaI CTCGAG 2 cut(s) 496, 961
SmlI CTYRAG 3 cut(s) 496, 792, 961
SmoI CTYRAG 3 cut(s) 496, 792, 961
Sse9I AATT 6 cut(s) 119, 144, 391, 474, 615, 811
SsiI CCGC 8 cut(s) 23, 44, 412, 641, 668, 869, 893, 912
SspMI CTAG 2 cut(s) 492, 746
SstI GAGCTC 1 cut(s) 491
StyD4I CCNGG 7 cut(s) 46, 269, 275, 749, 1016, 1031, 1036
StyI CCWWGG 3 cut(s) 167, 224, 375
TaaI ACNGT 2 cut(s) 763, 948
TaiI ACGT 3 cut(s) 534, 597, 861
TasI AATT 6 cut(s) 119, 144, 391, 474, 615, 811
TauI GCSGC 3 cut(s) 46, 643, 871
TfiI GAWTC 4 cut(s) 57, 336, 645, 703
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 1060
TseI GCWGC 2 cut(s) 441, 670
TspDTI ATGAA 1 cut(s) 471
TspGWI ACGGA 1 cut(s) 1020
TspRI CASTG 1 cut(s) 1060
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 4 cut(s) 229, 273, 381, 904
XapI RAATTY 1 cut(s) 474
XceI RCATGY 2 cut(s) 970, 985
XhoI CTCGAG 2 cut(s) 496, 961
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 2 cut(s) 492, 746
ZraI GACGTC 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.