Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327833.1

Orthogroup ID

OG0013046

Physical Location & Seq

Genomic Coordinates Forward (+)

123 .. 967

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327833.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 662 bp

atgggcgtgccggaaaccgaccctctttctcagctaagcttgccgccggggtttcggttctatcctaccgacgaggagcttctcgttcagtatctatgccggaaggttgctgggtaccaattcaacttgcagattattggtgaaattgacctatacaagttcgatccttgggttctaccaagcaaagccatttttggtgagaaggaatggtattttttcagtccaagggaccggaagtacccgaacgggtcacggcccaatcgggtagccgggtccgggtactggaaggccaccggtaccgataagatcatcaccaccgaaggtcggaaagttggaatcaagaaggcgcttgtgttttatgtcggcaaagctccgaaaggaaccaaaaccaattggattatgcacgagtaccgcctcatagagccttcacgcaaaaatggcagctcaaagttggatgaatgggtgctgtgtcgtatttacaagaagagctccggctcgagcgcagtagtacagaagccgatgtcgacgatgacaaacgttccgagcaaagagcagagctgcaacggctcgtcgtccgagtgctcttcgcaactggacgacgtgctcgagtggctgccggagattgaggacaggttcttcactctgccgcgaatcaactcgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

221

Amino Acids

25.2

Weight (kDa)

9.04

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca	FvH4_3g20690
malus_domestica	MD03G1222700.v1.1
prunus_persica	Prupe.4G186800_v2.0.a1
pyrus_communis	pycom03g17140 pycom11g21210
rosa_chinensis	RchiOBHm_Chr5g0034761
rosa_multiflora	Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii	Rroxscaffold_1G00045540
rosa_rugosa	Rorug05G0148400
rosa_samantha	Rh5AG240800 Rh5CG271800
rosa_wichuraiana	Rw5G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	114, 296
AccB1I	GGYRCC	2 cut(s)	114, 296
AccI	GTMKAC	1 cut(s)	524
AccII	CGCG	1 cut(s)	649
AciI	CCGC	3 cut(s)	44, 412, 647
AclI	AACGTT	1 cut(s)	537
AclWI	GGATC	1 cut(s)	158
AfaI	GTAC	6 cut(s)	116, 239, 281, 298, 410, 510
AfiI	CCNNNNNNNGG	3 cut(s)	276, 282, 324
AgeI	ACCGGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	601
AluBI	AGCT	7 cut(s)	34, 39, 79, 371, 444, 489, 558
AluI	AGCT	7 cut(s)	34, 39, 79, 371, 444, 489, 558
Alw21I	GWGCWC	3 cut(s)	491, 584, 606
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	2 cut(s)	496, 605
AoxI	GGCC	2 cut(s)	254, 288
ApeKI	GCWGC	3 cut(s)	441, 558, 613
AsiGI	ACCGGT	1 cut(s)	293
Asp718I	GGTACC	2 cut(s)	114, 296
AspLEI	GCGC	2 cut(s)	349, 503
AspS9I	GGNCC	3 cut(s)	229, 255, 273
AsuC2I	CCSGG	3 cut(s)	48, 271, 277
AsuHPI	GGTGA	3 cut(s)	152, 209, 304
AvaI	CYCGRG	2 cut(s)	496, 605
AvaII	GGWCC	2 cut(s)	229, 273
BanI	GGYRCC	2 cut(s)	114, 296
BanII	GRGCYC	1 cut(s)	491
BauI	CACGAG	1 cut(s)	404
Bbv12I	GWGCWC	3 cut(s)	491, 584, 606
BbvI	GCAGC	3 cut(s)	453, 545, 600
BceAI	ACGGC	2 cut(s)	269, 580
BcnI	CCSGG	3 cut(s)	48, 271, 277
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	5 cut(s)	44, 442, 559, 614, 647
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	5 cut(s)	45, 443, 560, 615, 648
Bme1390I	CCNGG	3 cut(s)	48, 271, 277
Bme18I	GGWCC	2 cut(s)	229, 273
BmeT110I	CYCGRG	2 cut(s)	496, 605
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	229, 255, 273
BmiI	GGNNCC	5 cut(s)	116, 230, 274, 298, 382
BmrFI	CCNGG	3 cut(s)	48, 271, 277
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuMI	CCSGG	3 cut(s)	48, 271, 277
BsaJI	CCNNGG	3 cut(s)	47, 167, 224
BsaWI	WCCGGW	2 cut(s)	231, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 282, 324
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	287, 597
BseDI	CCNNGG	3 cut(s)	47, 167, 224
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	3 cut(s)	276, 282, 324
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	287, 597
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	453, 545, 600
BseYI	CCCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	649
BshFI	GGCC	2 cut(s)	256, 290
BshNI	GGYRCC	2 cut(s)	114, 296
BshTI	ACCGGT	1 cut(s)	293
BsiHKAI	GWGCWC	3 cut(s)	491, 584, 606
BsiHKCI	CYCGRG	2 cut(s)	496, 605
BsiSI	CCGG	9 cut(s)	11, 47, 100, 232, 270, 276, 294, 492, 617
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	276, 282, 324
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	256, 290
BsoBI	CYCGRG	2 cut(s)	496, 605
Bsp1286I	GDGCHC	3 cut(s)	491, 584, 606
Bsp143I	GATC	2 cut(s)	163, 306
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	3 cut(s)	44, 412, 647
BspANI	GGCC	2 cut(s)	256, 290
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	649
BspLI	GGNNCC	5 cut(s)	116, 230, 274, 298, 382
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	2 cut(s)	479, 589
BspT107I	GGYRCC	2 cut(s)	114, 296
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	287, 597
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	47, 167, 224
BssMI	GATC	2 cut(s)	163, 306
BssSI	CACGAG	1 cut(s)	404
BssT1I	CCWWGG	2 cut(s)	167, 224
Bst2BI	CACGAG	1 cut(s)	404
Bst6I	CTCTTC	2 cut(s)	479, 589
BstC8I	GCNNGC	2 cut(s)	8, 41
BstDEI	CTNAG	2 cut(s)	30, 35
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	649
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	349, 503
BstKTI	GATC	2 cut(s)	166, 309
BstMBI	GATC	2 cut(s)	163, 306
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 438, 564, 610
BstSCI	CCNGG	3 cut(s)	46, 269, 275
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	453, 545, 600
BsuRI	GGCC	2 cut(s)	256, 290
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	8, 41
CfoI	GCGC	2 cut(s)	349, 503
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	229, 255, 273
Csp6I	GTAC	6 cut(s)	115, 238, 280, 297, 409, 509
CspAI	ACCGGT	1 cut(s)	293
CviQI	GTAC	6 cut(s)	115, 238, 280, 297, 409, 509
DdeI	CTNAG	2 cut(s)	30, 35
DpnI	GATC	2 cut(s)	165, 308
DpnII	GATC	2 cut(s)	163, 306
Eam1104I	CTCTTC	2 cut(s)	479, 589
EarI	CTCTTC	2 cut(s)	479, 589
Ecl136II	GAGCTC	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	167, 224
Eco24I	GRGCYC	1 cut(s)	491
Eco47I	GGWCC	2 cut(s)	229, 273
Eco53kI	GAGCTC	1 cut(s)	489
Eco88I	CYCGRG	2 cut(s)	496, 605
EcoICRI	GAGCTC	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	167, 224
EcoT38I	GRGCYC	1 cut(s)	491
ErhI	CCWWGG	2 cut(s)	167, 224
FaiI	YATR	5 cut(s)	97, 154, 360, 401, 419
FaqI	GGGAC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	5 cut(s)	44, 442, 559, 614, 647
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	5 cut(s)	44, 442, 559, 614, 647
GlaI	GCGC	2 cut(s)	348, 502
GluI	GCNGC	5 cut(s)	44, 442, 559, 614, 647
GsaI	CCCAGC	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	256, 290
HapII	CCGG	9 cut(s)	11, 47, 100, 232, 270, 276, 294, 492, 617
HhaI	GCGC	2 cut(s)	349, 503
Hin6I	GCGC	2 cut(s)	347, 501
HinP1I	GCGC	2 cut(s)	347, 501
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	2 cut(s)	336, 651
HpaII	CCGG	9 cut(s)	11, 47, 100, 232, 270, 276, 294, 492, 617
HphI	GGTGA	3 cut(s)	152, 209, 304
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	4 cut(s)	327, 375, 543, 577
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	1 cut(s)	525
Hpy99I	CGWCG	4 cut(s)	74, 529, 574, 602
HpyAV	CCTTC	6 cut(s)	97, 196, 280, 314, 337, 435
HpyCH4IV	ACGT	2 cut(s)	537, 600
HpyCH4V	TGCA	3 cut(s)	130, 403, 561
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 438, 564, 610
HpyF3I	CTNAG	2 cut(s)	30, 35
HpySE526I	ACGT	2 cut(s)	537, 600
HspAI	GCGC	2 cut(s)	347, 501
KpnI	GGTACC	2 cut(s)	118, 300
Kzo9I	GATC	2 cut(s)	163, 306
LguI	GCTCTTC	2 cut(s)	479, 589
LmnI	GCTCC	3 cut(s)	76, 376, 494
Lsp1109I	GCAGC	3 cut(s)	453, 545, 600
MaeII	ACGT	2 cut(s)	537, 600
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	165, 308
MboI	GATC	2 cut(s)	163, 306
MboII	GAAGA	3 cut(s)	496, 576, 628
MfeI	CAATTG	1 cut(s)	391
MhlI	GDGCHC	3 cut(s)	491, 584, 606
MluCI	AATT	3 cut(s)	119, 144, 391
MmeI	TCCRAC	3 cut(s)	305, 313, 432
MnlI	CCTC	4 cut(s)	33, 67, 425, 619
MspI	CCGG	9 cut(s)	11, 47, 100, 232, 270, 276, 294, 492, 617
MspR9I	CCNGG	3 cut(s)	48, 271, 277
MunI	CAATTG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	4 cut(s)	40, 438, 564, 610
NciI	CCSGG	3 cut(s)	48, 271, 277
NdeII	GATC	2 cut(s)	163, 306
NlaIV	GGNNCC	5 cut(s)	116, 230, 274, 298, 382
NmuCI	GTSAC	1 cut(s)	249
PaeR7I	CTCGAG	2 cut(s)	496, 605
PciSI	GCTCTTC	2 cut(s)	479, 589
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	336, 651
PinAI	ACCGGT	1 cut(s)	293
PkrI	GCNGC	5 cut(s)	45, 443, 560, 615, 648
Psp124BI	GAGCTC	1 cut(s)	491
Psp1406I	AACGTT	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	110
PspN4I	GGNNCC	5 cut(s)	116, 230, 274, 298, 382
PspPI	GGNCC	3 cut(s)	229, 255, 273
PspXI	VCTCGAGB	2 cut(s)	496, 605
RsaI	GTAC	6 cut(s)	116, 239, 281, 298, 410, 510
RsaNI	GTAC	6 cut(s)	115, 238, 280, 297, 409, 509
SacI	GAGCTC	1 cut(s)	491
SalI	GTCGAC	1 cut(s)	523
SapI	GCTCTTC	2 cut(s)	479, 589
SatI	GCNGC	5 cut(s)	44, 442, 559, 614, 647
Sau3AI	GATC	2 cut(s)	163, 306
Sau96I	GGNCC	3 cut(s)	229, 255, 273
ScrFI	CCNGG	3 cut(s)	48, 271, 277
SduI	GDGCHC	3 cut(s)	491, 584, 606
Sfr274I	CTCGAG	2 cut(s)	496, 605
SinI	GGWCC	2 cut(s)	229, 273
SlaI	CTCGAG	2 cut(s)	496, 605
SmlI	CTYRAG	2 cut(s)	496, 605
SmoI	CTYRAG	2 cut(s)	496, 605
Sse9I	AATT	3 cut(s)	119, 144, 391
SsiI	CCGC	3 cut(s)	44, 412, 647
SstI	GAGCTC	1 cut(s)	491
StyD4I	CCNGG	3 cut(s)	46, 269, 275
StyI	CCWWGG	2 cut(s)	167, 224
TaiI	ACGT	2 cut(s)	540, 603
TaqI	TCGA	4 cut(s)	162, 497, 524, 606
TasI	AATT	3 cut(s)	119, 144, 391
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	2 cut(s)	46, 649
TfiI	GAWTC	2 cut(s)	336, 651
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	3 cut(s)	441, 558, 613
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	471
VpaK11BI	GGWCC	2 cut(s)	229, 273
XhoI	CTCGAG	2 cut(s)	496, 605
XmiI	GTMKAC	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.