Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013046

Physical Location & Seq

Genomic Coordinates Reverse (-)

13707192 .. 13709170

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCACGAGTATCGCTTAATAGAACATTCTCGTAGCCATGGAAGCTCCAAGTTGGATGATTGGGTGTTGTGTCGAATTTACAAGAAAACATCTGGATCTCAGAGACAAGCTGTTACTCCTGTTCAAGCTTGTCGTGAAGAGCATAGCACGAATGGGTCGTCATCGTCTTCTTCATCACAGCTTGACGACGTTCTTGATTCGTTCCCGGAGATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCAGGACGATTCTTAACGGGAACTTTGATTGGGCTAGCTTGGCAGGTCTTAATCCAATTCCAGAGCTAGCTCCGACCAATGGATTACCGAGTTACGGTGGTTACGATGCGTTTCGAGCGGCGGAAGGTGAGGCGGAGAGTGGGCATGTGAATCGGCAGCAGAACTCGAGCGGGTTGACTCAGAGTTTCGGGTACAGCTCGAGTGGGTTTGGTGTTTCGGGTCAAACATTCGAGTTTAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

164

Amino Acids

18.0

Weight (kDa)

5.69

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca	FvH4_3g20690
malus_domestica	MD03G1222700.v1.1
prunus_persica	Prupe.4G186800_v2.0.a1
pyrus_communis	pycom03g17140 pycom11g21210
rosa_chinensis	RchiOBHm_Chr5g0034761
rosa_multiflora	Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii	Rroxscaffold_1G00045540
rosa_rugosa	Rorug05G0148400
rosa_samantha	Rh5AG240800 Rh5CG271800
rosa_wichuraiana	Rw5G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	284
AccBSI	CCGCTC	2 cut(s)	368, 420
AciI	CCGC	4 cut(s)	368, 371, 383, 420
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	75, 244
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	329, 344
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	8 cut(s)	45, 110, 128, 181, 288, 316, 320, 447
AluI	AGCT	8 cut(s)	45, 110, 128, 181, 288, 316, 320, 447
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	2 cut(s)	415, 448
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	2 cut(s)	75, 244
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	389
AsuNHI	GCTAGC	2 cut(s)	284, 316
AvaI	CYCGRG	2 cut(s)	415, 448
BauI	CACGAG	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	3 cut(s)	27, 383, 417
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	285, 317
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	369, 407
BlsI	GCNGC	2 cut(s)	370, 408
Bme1390I	CCNGG	1 cut(s)	206
BmeT110I	CYCGRG	2 cut(s)	415, 448
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	346
BmtI	GCTAGC	2 cut(s)	288, 320
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	37, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 344
Bse1I	ACTGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	37, 236
BseGI	GGATG	2 cut(s)	61, 246
BseLI	CCNNNNNNNGG	2 cut(s)	329, 344
BseMII	CTCAG	3 cut(s)	113, 265, 443
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	418
BsiHKCI	CYCGRG	2 cut(s)	415, 448
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	329, 344
BsmAI	GTCTC	1 cut(s)	97
BsoBI	CYCGRG	2 cut(s)	415, 448
Bsp143I	GATC	1 cut(s)	95
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	4 cut(s)	368, 371, 383, 420
BspCNI	CTCAG	3 cut(s)	112, 264, 442
BspMI	ACCTGC	1 cut(s)	284
BspOI	GCTAGC	2 cut(s)	288, 320
BspPI	GGATC	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	132
BsrBI	CCGCTC	2 cut(s)	368, 420
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	37, 236
BssMI	GATC	1 cut(s)	95
BssSI	CACGAG	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	286, 318
BstDEI	CTNAG	3 cut(s)	99, 251, 429
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	61, 246
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 290, 365
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	61, 246
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	286, 318
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	2 cut(s)	38, 395
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	99, 251, 429
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EciI	GGCGGA	2 cut(s)	386, 398
Eco130I	CCWWGG	1 cut(s)	37
Eco88I	CYCGRG	2 cut(s)	415, 448
EcoRI	GAATTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	41, 398
FaiI	YATR	3 cut(s)	39, 144, 396
FatI	CATG	2 cut(s)	37, 394
FauI	CCCGC	1 cut(s)	413
Fnu4HI	GCNGC	2 cut(s)	369, 407
FokI	GGATG	2 cut(s)	68, 253
Fsp4HI	GCNGC	2 cut(s)	369, 407
FspBI	CTAG	2 cut(s)	285, 317
GluI	GCNGC	2 cut(s)	369, 407
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	2 cut(s)	41, 398
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	4 cut(s)	197, 259, 400, 427
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	4 cut(s)	102, 240, 324, 432
Hpy188III	TCNNGA	5 cut(s)	93, 134, 194, 253, 311
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 290, 365
HpyF3I	CTNAG	3 cut(s)	99, 251, 429
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	41, 398
Kzo9I	GATC	1 cut(s)	95
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	50, 325
LpnPI	CCDG	7 cut(s)	78, 132, 219, 233, 238, 279, 324
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	285, 317
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	112, 341, 350
MalI	GATC	1 cut(s)	97
MbiI	CCGCTC	2 cut(s)	368, 420
MboI	GATC	1 cut(s)	95
MboII	GAAGA	4 cut(s)	149, 159, 162, 224
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	3 cut(s)	75, 244, 306
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	33, 347
MnlI	CCTC	2 cut(s)	246, 373
MseI	TTAA	4 cut(s)	17, 228, 264, 300
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	42, 290, 365
NciI	CCSGG	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	1 cut(s)	95
NheI	GCTAGC	2 cut(s)	284, 316
NlaIII	CATG	2 cut(s)	41, 398
NspI	RCATGY	1 cut(s)	398
PaeR7I	CTCGAG	2 cut(s)	415, 448
PciSI	GCTCTTC	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	3 cut(s)	155, 254, 351
PfeI	GAWTC	3 cut(s)	197, 259, 400
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	370, 408
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PspXI	VCTCGAGB	2 cut(s)	415, 448
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	17, 228, 264, 300
SatI	GCNGC	2 cut(s)	369, 407
Sau3AI	GATC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	346
Sfr274I	CTCGAG	2 cut(s)	415, 448
SlaI	CTCGAG	2 cut(s)	415, 448
SmlI	CTYRAG	2 cut(s)	415, 448
SmoI	CTYRAG	2 cut(s)	415, 448
Sse9I	AATT	3 cut(s)	75, 244, 306
SsiI	CCGC	4 cut(s)	368, 371, 383, 420
SspMI	CTAG	2 cut(s)	285, 317
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	73, 364, 416, 449, 480
TasI	AATT	3 cut(s)	75, 244, 306
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	3 cut(s)	197, 259, 400
Tru1I	TTAA	4 cut(s)	17, 228, 264, 300
Tru9I	TTAA	4 cut(s)	17, 228, 264, 300
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	162, 257
XapI	RAATTY	2 cut(s)	75, 244
XceI	RCATGY	1 cut(s)	398
XhoI	CTCGAG	2 cut(s)	415, 448
XspI	CTAG	2 cut(s)	285, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.