RchiOBHm_Chr5g0034761
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013046
Physical Location & Seq
Forward (+)
28653706 .. 28655613
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31373

Sequence Viewer

Length: 1059 bp
ATGGGCGTGCCGGAAACCGACCCTCTTTCTCAGCTAAGCTTGCCGCCGGGGTTTCGGTTCTATCCTACAGACGAGGAGCTTCTCGTTCAGTATCTATGCCGGAAGGTTGCTGGGTACCAATTCAACTTGCAGATTATTGGTGAAATTGACCTATACAAGTTCGATCCTTGGGTTCTACCAAGCAAAGCCATTTTTGGTGAGAAGGAATGGTATTTTTTCAGTCCAAGGGACCGGAAGTACCCGAACGGGTCACGGCCCAATCGGGTAGCCGGGTCCGGGTACTGGAAGGCCACCGGTACCGATAAGATCATCACCACCGAAGGTCGGAAAGTTGGAATCAAGAAGGCGCTTGTGTTTTATGTCGGCAAAGCTCCGAAAGGAACCAAAACCAATTGGATTATGCACGAGTACCGCCTCATAGAGCCTTCACGCAAAAATGGCAGCTCAAAGTTGGATGAATGGGTGCTGTGTCGTATTTACAAGAAGAACTCCAGCTCGAGCGCAGTAGTACAGAAGCCGATGTCGACGATGGCAAACGTTCCGAGCAAAGAGCAGAGCTGCAACGGCTCGTCGTCCGAGTGCTCTTCGCAATTGGACGACGTGCTCGAGTGGCTGCCGGAGATTGAGGACAGGTTCTTCACTCTGCCGCGAATCAACTCGCTTAAGGCTCTACCCCAGCAGCAGGAGGACAACAAGCTCAATCTTCAGAATCTGGGGAATCTCGGGTCGGGCAATTTCGACTGGGCGAGTCTAGCCGGGCTCAACCCGGTGCAGGAAGTAGTTCCCAATACCCAAGCCCAGCTAAATTACAACAATGACTTCTATGTCCCTTCGATCCCGCCTCTCTGCCACGTGGAATCGCCGCCGGAGAGGATGGGAAGGAAAATGGAGGAGGAGGTGCAGAGTGGACTCAAAACTCAGCGAGTTGAAAACTCGGGATTGTTCCAGCAGAACTCGAACCTGTTCACGCACAACATGCGCACCCCGATTGACACTTACGGGTTGGGCACCCGATTCGGCCTGGCCGGGCCGGGTTTCAGCTACGGCTGTGAAAAGTGA

Protein Analysis

352

Amino Acids

39.75

Weight (kDa)

8.38

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 139 6.1e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca FvH4_3g20690
malus_domestica MD03G1222700.v1.1
prunus_persica Prupe.4G186800_v2.0.a1
pyrus_communis pycom03g17140 pycom11g21210
rosa_chinensis RchiOBHm_Chr5g0034761
rosa_multiflora Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii Rroxscaffold_1G00045540
rosa_rugosa Rorug05G0148400
rosa_samantha Rh5AG240800 Rh5CG271800
rosa_wichuraiana Rw5G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 824
Acc16I TGCGCA 1 cut(s) 980
Acc65I GGTACC 2 cut(s) 114, 296
AccB1I GGYRCC 3 cut(s) 114, 296, 1007
AccI GTMKAC 1 cut(s) 524
AccII CGCG 1 cut(s) 649
AciI CCGC 5 cut(s) 44, 412, 647, 839, 863
AclI AACGTT 1 cut(s) 537
AclWI GGATC 2 cut(s) 158, 829
AcoI YGGCCR 1 cut(s) 1023
AcuI CTGAAG 1 cut(s) 689
AcvI CACGTG 1 cut(s) 853
AfaI GTAC 6 cut(s) 116, 239, 281, 298, 410, 510
AfiI CCNNNNNNNGG 5 cut(s) 276, 282, 324, 682, 772
AflII CTTAAG 1 cut(s) 662
AgeI ACCGGT 1 cut(s) 293
AgsI TTSAA 2 cut(s) 124, 929
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 1 cut(s) 1020
Alw21I GWGCWC 2 cut(s) 584, 606
AlwI GGATC 2 cut(s) 158, 829
AlwNI CAGNNNCTG 1 cut(s) 712
Ama87I CYCGRG 4 cut(s) 496, 605, 722, 934
AoxI GGCC 5 cut(s) 254, 288, 1018, 1023, 1028
ApeKI GCWGC 4 cut(s) 441, 558, 613, 679
AsiGI ACCGGT 1 cut(s) 293
Asp700I GAANNNNTTC 2 cut(s) 780, 962
Asp718I GGTACC 2 cut(s) 114, 296
AspLEI GCGC 3 cut(s) 349, 503, 981
AspS9I GGNCC 4 cut(s) 229, 255, 273, 1028
AsuC2I CCSGG 7 cut(s) 48, 271, 277, 757, 767, 1027, 1032
AsuHPI GGTGA 3 cut(s) 152, 209, 304
AvaI CYCGRG 4 cut(s) 496, 605, 722, 934
AvaII GGWCC 2 cut(s) 229, 273
BaeGI GKGCMC 1 cut(s) 1010
BanI GGYRCC 3 cut(s) 114, 296, 1007
BanII GRGCYC 1 cut(s) 762
BauI CACGAG 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 853
Bbv12I GWGCWC 2 cut(s) 584, 606
BbvI GCAGC 4 cut(s) 453, 545, 600, 691
BccI CCATC 2 cut(s) 523, 868
BceAI ACGGC 2 cut(s) 269, 580
BcgI CGANNNNNNTGC 2 cut(s) 997, 1031
BciT130I CCWGG 1 cut(s) 1022
BcnI CCSGG 7 cut(s) 48, 271, 277, 757, 767, 1027, 1032
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 350
BfrI CTTAAG 1 cut(s) 662
BisI GCNGC 7 cut(s) 44, 442, 559, 614, 647, 680, 863
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 7 cut(s) 45, 443, 560, 615, 648, 681, 864
Bme1390I CCNGG 8 cut(s) 48, 271, 277, 757, 767, 1022, 1027, 1032
Bme18I GGWCC 2 cut(s) 229, 273
BmeT110I CYCGRG 4 cut(s) 496, 605, 722, 934
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 4 cut(s) 229, 255, 273, 1028
BmiI GGNNCC 6 cut(s) 116, 230, 274, 298, 382, 1009
BmrFI CCNGG 8 cut(s) 48, 271, 277, 757, 767, 1022, 1027, 1032
BmrI ACTGGG 1 cut(s) 751
BmuI ACTGGG 1 cut(s) 751
BpmI CTGGAG 1 cut(s) 475
Bpu1102I GCTNAGC 1 cut(s) 35
BpuMI CCSGG 7 cut(s) 48, 271, 277, 757, 767, 1027, 1032
BsaAI YACGTR 1 cut(s) 853
BsaJI CCNNGG 3 cut(s) 47, 167, 224
BsaWI WCCGGW 2 cut(s) 231, 293
Bsc4I CCNNNNNNNGG 5 cut(s) 276, 282, 324, 682, 772
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 287, 746
BseBI CCWGG 1 cut(s) 1022
BseDI CCNNGG 3 cut(s) 47, 167, 224
BseGI GGATG 2 cut(s) 460, 879
BseLI CCNNNNNNNGG 5 cut(s) 276, 282, 324, 682, 772
BseMII CTCAG 2 cut(s) 44, 932
BseNI ACTGG 2 cut(s) 287, 746
BseRI GAGGAG 3 cut(s) 89, 905, 908
BseSI GKGCMC 1 cut(s) 1010
BseXI GCAGC 4 cut(s) 453, 545, 600, 691
BseYI CCCAGC 3 cut(s) 110, 675, 798
BsgI GTGCAG 2 cut(s) 791, 920
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 5 cut(s) 256, 290, 1020, 1025, 1030
BshNI GGYRCC 3 cut(s) 114, 296, 1007
BshTI ACCGGT 1 cut(s) 293
BsiHKAI GWGCWC 2 cut(s) 584, 606
BsiHKCI CYCGRG 4 cut(s) 496, 605, 722, 934
BslFI GGGAC 2 cut(s) 242, 812
BslI CCNNNNNNNGG 5 cut(s) 276, 282, 324, 682, 772
BsmFI GGGAC 2 cut(s) 242, 812
BsnI GGCC 5 cut(s) 256, 290, 1020, 1025, 1030
BsoBI CYCGRG 4 cut(s) 496, 605, 722, 934
Bsp1286I GDGCHC 4 cut(s) 584, 606, 762, 1010
Bsp143I GATC 3 cut(s) 163, 306, 834
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 5 cut(s) 44, 412, 647, 839, 863
BspANI GGCC 5 cut(s) 256, 290, 1020, 1025, 1030
BspCNI CTCAG 2 cut(s) 43, 931
BspFNI CGCG 1 cut(s) 649
BspLI GGNNCC 6 cut(s) 116, 230, 274, 298, 382, 1009
BspPI GGATC 2 cut(s) 158, 829
BspQI GCTCTTC 1 cut(s) 589
BspT107I GGYRCC 3 cut(s) 114, 296, 1007
BspTI CTTAAG 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 2 cut(s) 287, 746
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 47, 167, 224
BssMI GATC 3 cut(s) 163, 306, 834
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 2 cut(s) 167, 224
Bst2BI CACGAG 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 1022
Bst6I CTCTTC 1 cut(s) 589
BstAFI CTTAAG 1 cut(s) 662
BstAPI GCANNNNNTGC 1 cut(s) 976
BstBAI YACGTR 1 cut(s) 853
BstC8I GCNNGC 2 cut(s) 8, 41
BstDEI CTNAG 3 cut(s) 30, 35, 918
BstF5I GGATG 2 cut(s) 460, 879
BstFNI CGCG 1 cut(s) 649
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 3 cut(s) 349, 503, 981
BstKTI GATC 3 cut(s) 166, 309, 837
BstMBI GATC 3 cut(s) 163, 306, 834
BstMWI GCNNNNNNNGC 6 cut(s) 40, 438, 564, 610, 752, 976
BstNI CCWGG 1 cut(s) 1022
BstNSI RCATGY 1 cut(s) 979
BstSCI CCNGG 8 cut(s) 46, 269, 275, 755, 765, 1020, 1025, 1030
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 1010
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 4 cut(s) 453, 545, 600, 691
BsuRI GGCC 5 cut(s) 256, 290, 1020, 1025, 1030
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 2 cut(s) 460, 879
Cac8I GCNNGC 2 cut(s) 8, 41
CaiI CAGNNNCTG 1 cut(s) 712
CfoI GCGC 3 cut(s) 349, 503, 981
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 229, 255, 273, 1028
Csp6I GTAC 6 cut(s) 115, 238, 280, 297, 409, 509
CspAI ACCGGT 1 cut(s) 293
CviAII CATG 1 cut(s) 976
CviQI GTAC 6 cut(s) 115, 238, 280, 297, 409, 509
DdeI CTNAG 3 cut(s) 30, 35, 918
DpnI GATC 3 cut(s) 165, 308, 836
DpnII GATC 3 cut(s) 163, 306, 834
DrdI GACNNNNNNGTC 1 cut(s) 824
DseDI GACNNNNNNGTC 1 cut(s) 824
EaeI YGGCCR 1 cut(s) 1023
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco130I CCWWGG 2 cut(s) 167, 224
Eco24I GRGCYC 1 cut(s) 762
Eco47I GGWCC 2 cut(s) 229, 273
Eco57I CTGAAG 1 cut(s) 689
Eco72I CACGTG 1 cut(s) 853
Eco88I CYCGRG 4 cut(s) 496, 605, 722, 934
EcoRII CCWGG 1 cut(s) 1020
EcoT14I CCWWGG 2 cut(s) 167, 224
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 2 cut(s) 167, 224
FaeI CATG 1 cut(s) 979
FaiI YATR 7 cut(s) 97, 154, 360, 401, 419, 825, 977
FaqI GGGAC 2 cut(s) 242, 812
FatI CATG 1 cut(s) 975
FauI CCCGC 1 cut(s) 846
FblI GTMKAC 1 cut(s) 524
Fnu4HI GCNGC 7 cut(s) 44, 442, 559, 614, 647, 680, 863
FokI GGATG 2 cut(s) 467, 886
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 7 cut(s) 44, 442, 559, 614, 647, 680, 863
FspAI RTGCGCAY 1 cut(s) 980
FspBI CTAG 1 cut(s) 752
FspI TGCGCA 1 cut(s) 980
GlaI GCGC 3 cut(s) 348, 502, 980
GluI GCNGC 7 cut(s) 44, 442, 559, 614, 647, 680, 863
GsaI CCCAGC 3 cut(s) 114, 679, 802
GsuI CTGGAG 1 cut(s) 475
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 5 cut(s) 256, 290, 1020, 1025, 1030
HhaI GCGC 3 cut(s) 349, 503, 981
Hin1II CATG 1 cut(s) 979
Hin6I GCGC 3 cut(s) 347, 501, 979
HinP1I GCGC 3 cut(s) 347, 501, 979
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 8 cut(s) 336, 651, 709, 718, 748, 857, 909, 1014
HphI GGTGA 3 cut(s) 152, 209, 304
Hpy166II GTNNAC 3 cut(s) 525, 908, 966
Hpy188I TCNGA 5 cut(s) 327, 375, 543, 577, 708
Hpy188III TCNNGA 2 cut(s) 340, 936
Hpy8I GTNNAC 3 cut(s) 525, 908, 966
Hpy99I CGWCG 3 cut(s) 529, 574, 602
HpyAV CCTTC 8 cut(s) 97, 196, 280, 314, 337, 435, 840, 873
HpyCH4IV ACGT 3 cut(s) 537, 600, 852
HpyCH4V TGCA 5 cut(s) 130, 403, 561, 772, 901
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 438, 564, 610, 752, 976
HpyF3I CTNAG 3 cut(s) 30, 35, 918
HpySE526I ACGT 3 cut(s) 537, 600, 852
Hsp92II CATG 1 cut(s) 979
HspAI GCGC 3 cut(s) 347, 501, 979
KpnI GGTACC 2 cut(s) 118, 300
Kzo9I GATC 3 cut(s) 163, 306, 834
LguI GCTCTTC 1 cut(s) 589
LmnI GCTCC 2 cut(s) 76, 376
Lsp1109I GCAGC 4 cut(s) 453, 545, 600, 691
MaeI CTAG 1 cut(s) 752
MaeII ACGT 3 cut(s) 537, 600, 852
MaeIII GTNAC 1 cut(s) 249
MalI GATC 3 cut(s) 165, 308, 836
MboI GATC 3 cut(s) 163, 306, 834
MboII GAAGA 4 cut(s) 496, 576, 628, 695
MfeI CAATTG 2 cut(s) 391, 590
MhlI GDGCHC 4 cut(s) 584, 606, 762, 1010
MluCI AATT 6 cut(s) 119, 144, 391, 590, 733, 805
MlyI GAGTC 2 cut(s) 757, 903
MmeI TCCRAC 3 cut(s) 305, 313, 432
MroXI GAANNNNTTC 2 cut(s) 780, 962
MseI TTAA 1 cut(s) 663
MspCI CTTAAG 1 cut(s) 662
MspR9I CCNGG 8 cut(s) 48, 271, 277, 757, 767, 1022, 1027, 1032
MunI CAATTG 2 cut(s) 391, 590
MvaI CCWGG 1 cut(s) 1022
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 6 cut(s) 40, 438, 564, 610, 752, 976
NciI CCSGG 7 cut(s) 48, 271, 277, 757, 767, 1027, 1032
NdeII GATC 3 cut(s) 163, 306, 834
NlaIII CATG 1 cut(s) 979
NlaIV GGNNCC 6 cut(s) 116, 230, 274, 298, 382, 1009
NmuCI GTSAC 1 cut(s) 249
NsbI TGCGCA 1 cut(s) 980
NspI RCATGY 1 cut(s) 979
PaeR7I CTCGAG 2 cut(s) 496, 605
PciSI GCTCTTC 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PdmI GAANNNNTTC 2 cut(s) 780, 962
PfeI GAWTC 6 cut(s) 336, 651, 709, 718, 857, 1014
PinAI ACCGGT 1 cut(s) 293
PkrI GCNGC 7 cut(s) 45, 443, 560, 615, 648, 681, 864
PleI GAGTC 2 cut(s) 756, 903
PmaCI CACGTG 1 cut(s) 853
PmlI CACGTG 1 cut(s) 853
PpsI GAGTC 2 cut(s) 756, 903
Ppu21I YACGTR 1 cut(s) 853
Psp1406I AACGTT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 1020
PspCI CACGTG 1 cut(s) 853
PspFI CCCAGC 3 cut(s) 110, 675, 798
PspGI CCWGG 1 cut(s) 1020
PspN4I GGNNCC 6 cut(s) 116, 230, 274, 298, 382, 1009
PspPI GGNCC 4 cut(s) 229, 255, 273, 1028
PspXI VCTCGAGB 2 cut(s) 496, 605
PstNI CAGNNNCTG 1 cut(s) 712
RsaI GTAC 6 cut(s) 116, 239, 281, 298, 410, 510
RsaNI GTAC 6 cut(s) 115, 238, 280, 297, 409, 509
SalI GTCGAC 1 cut(s) 523
SapI GCTCTTC 1 cut(s) 589
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 7 cut(s) 44, 442, 559, 614, 647, 680, 863
Sau3AI GATC 3 cut(s) 163, 306, 834
Sau96I GGNCC 4 cut(s) 229, 255, 273, 1028
SchI GAGTC 2 cut(s) 757, 903
ScrFI CCNGG 8 cut(s) 48, 271, 277, 757, 767, 1022, 1027, 1032
SduI GDGCHC 4 cut(s) 584, 606, 762, 1010
SfcI CTRYAG 1 cut(s) 66
Sfr274I CTCGAG 2 cut(s) 496, 605
SinI GGWCC 2 cut(s) 229, 273
SlaI CTCGAG 2 cut(s) 496, 605
SmlI CTYRAG 3 cut(s) 496, 605, 662
SmoI CTYRAG 3 cut(s) 496, 605, 662
Sse9I AATT 6 cut(s) 119, 144, 391, 590, 733, 805
SsiI CCGC 5 cut(s) 44, 412, 647, 839, 863
SspMI CTAG 1 cut(s) 752
StyD4I CCNGG 8 cut(s) 46, 269, 275, 755, 765, 1020, 1025, 1030
StyI CCWWGG 2 cut(s) 167, 224
TaiI ACGT 3 cut(s) 540, 603, 855
TaqI TCGA 7 cut(s) 162, 497, 524, 606, 738, 833, 956
TasI AATT 6 cut(s) 119, 144, 391, 590, 733, 805
TatI WGTACW 1 cut(s) 508
TauI GCSGC 3 cut(s) 46, 649, 865
TfiI GAWTC 6 cut(s) 336, 651, 709, 718, 857, 1014
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TseFI GTSAC 1 cut(s) 249
TseI GCWGC 4 cut(s) 441, 558, 613, 679
Tsp45I GTSAC 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 471
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 229, 273
XceI RCATGY 1 cut(s) 979
XhoI CTCGAG 2 cut(s) 496, 605
XmiI GTMKAC 1 cut(s) 524
XmnI GAANNNNTTC 2 cut(s) 780, 962
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.