Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013046

Physical Location & Seq

Genomic Coordinates Forward (+)

5234457 .. 5236196

Gene Structure 1740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGTCTCCAAGAGCTTGACCCGTTAGCCCAATTGAGCTTACCGCCGGGTTTTCGGTTTTATCCGACTGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGTCACGACTTCTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTTTTACCAAGTAAGGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCGAGGGATAGGAAGTATCCAAACGGGTCAAGACCTAATCGGGTTGCCGGGTCGGGTTATTGGAAAGCCACCGGTACGGATAAAGTTATCTCGACGGAGGGAAGAAGAGTTGGTATCAAGAAAGCTTTGGTGTTTTACATTGGAAAAGCTCCAAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTCATCGAACCCTCTCGTCGAAATGGAAGCACCAAGCTTGATGATTGGGTTTTATGTCGAATATACAAAAAGCAAACAAGCGCACAAAAACAAGCTTACAATAATCTAATGACGAGTGGTCGTGAATACAGCAACAATGGTTCGTCGACATCTTCTTCGTCTCATCAATACGACGACGTTCTCGAGTCGTTGCATGAGATTGACAACAGAAGTTTGGGGTTTGCCGCCGGTTCATCAAACGCGCTGCCTCATAGTCATAGACCGGTTTTAACCAATCATAAAACCGGGTTTCAGGGTTTAGCCAGGGAGCCAAGTTTTGATTGGGCGAATTTGATTGGACAGAACTCGGTCCCGGAACTCGGACTGAGTCATAACGTTCCGAGTATTCGTTACGGTGACGGTGGAACGCAGCAACAAACTGAGGGGATTCCTCGGTTTAATAATAACTCGGACGTCTCGGCTAATCAGGGTTTTAGTGTTGACCCGGTTAACGGATTTGGGTACTCGGGTCAACAATCTAGTGGGTTCGGGTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

317

Amino Acids

35.41

Weight (kDa)

8.67

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 139	4.6e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca	FvH4_3g20690
malus_domestica	MD03G1222700.v1.1
prunus_persica	Prupe.4G186800_v2.0.a1
pyrus_communis	pycom03g17140 pycom11g21210
rosa_chinensis	RchiOBHm_Chr5g0034761
rosa_multiflora	Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii	Rroxscaffold_1G00045540
rosa_rugosa	Rorug05G0148400
rosa_samantha	Rh5AG240800 Rh5CG271800
rosa_wichuraiana	Rw5G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	870
AccI	GTMKAC	1 cut(s)	560
AccII	CGCG	1 cut(s)	656
AciI	CCGC	3 cut(s)	44, 108, 639
AclI	AACGTT	1 cut(s)	789
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	742
AcyI	GRCGYC	1 cut(s)	867
AfaI	GTAC	3 cut(s)	298, 410, 917
AfiI	CCNNNNNNNGG	2 cut(s)	773, 905
AgeI	ACCGGT	2 cut(s)	293, 676
AgsI	TTSAA	1 cut(s)	89
AhdI	GACNNNNNGTC	1 cut(s)	531
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	9 cut(s)	16, 39, 79, 133, 140, 347, 371, 451, 509
AluI	AGCT	9 cut(s)	16, 39, 79, 133, 140, 347, 371, 451, 509
Alw26I	GTCTC	4 cut(s)	11, 419, 579, 874
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	3 cut(s)	223, 596, 919
ApeKI	GCWGC	2 cut(s)	658, 823
ApoI	RAATTY	1 cut(s)	742
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
AsiGI	ACCGGT	2 cut(s)	293, 676
AspLEI	GCGC	2 cut(s)	497, 658
AspS9I	GGNCC	1 cut(s)	763
AsuC2I	CCSGG	5 cut(s)	48, 271, 700, 767, 899
AsuHPI	GGTGA	2 cut(s)	209, 821
AvaI	CYCGRG	3 cut(s)	223, 596, 919
AvaII	GGWCC	1 cut(s)	763
BaeI	ACNNNNGTAYC	2 cut(s)	907, 940
BbvI	GCAGC	2 cut(s)	645, 835
BccI	CCATC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	718
BciVI	GTATCC	1 cut(s)	249
BcnI	CCSGG	5 cut(s)	48, 271, 700, 767, 899
BcoDI	GTCTC	4 cut(s)	11, 419, 579, 874
BfaI	CTAG	1 cut(s)	933
BfmI	CTRYAG	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	4 cut(s)	108, 639, 659, 824
BlsI	GCNGC	4 cut(s)	109, 640, 660, 825
Bme1390I	CCNGG	6 cut(s)	48, 271, 700, 718, 767, 899
Bme18I	GGWCC	1 cut(s)	763
BmeRI	GACNNNNNGTC	1 cut(s)	531
BmeT110I	CYCGRG	3 cut(s)	223, 596, 919
BmgT120I	GGNCC	1 cut(s)	763
BmiI	GGNNCC	3 cut(s)	382, 723, 765
BmrFI	CCNGG	6 cut(s)	48, 271, 700, 718, 767, 899
BpmI	CTGGAG	1 cut(s)	113
BpuMI	CCSGG	5 cut(s)	48, 271, 700, 767, 899
Bsa29I	ATCGAT	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	867
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	4 cut(s)	167, 224, 717, 845
BsaWI	WCCGGW	2 cut(s)	293, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	773, 905
Bse118I	RCCGGY	4 cut(s)	110, 293, 641, 676
BseBI	CCWGG	1 cut(s)	718
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	4 cut(s)	167, 224, 717, 845
BseLI	CCNNNNNNNGG	2 cut(s)	773, 905
BseMII	CTCAG	2 cut(s)	770, 825
BseXI	GCAGC	2 cut(s)	645, 835
Bsh1236I	CGCG	1 cut(s)	656
BshTI	ACCGGT	2 cut(s)	293, 676
BshVI	ATCGAT	1 cut(s)	147
BsiHKCI	CYCGRG	3 cut(s)	223, 596, 919
BsiSI	CCGG	9 cut(s)	47, 111, 270, 294, 642, 677, 699, 767, 899
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	2 cut(s)	773, 905
BsmAI	GTCTC	4 cut(s)	11, 419, 579, 874
BsmBI	CGTCTC	3 cut(s)	419, 579, 874
BsmFI	GGGAC	1 cut(s)	749
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	3 cut(s)	223, 596, 919
Bsp143I	GATC	2 cut(s)	148, 163
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	3 cut(s)	44, 108, 639
BspCNI	CTCAG	2 cut(s)	771, 826
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	656
BspLI	GGNNCC	3 cut(s)	382, 723, 765
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	11
BsrFI	RCCGGY	4 cut(s)	110, 293, 641, 676
BssAI	RCCGGY	4 cut(s)	110, 293, 641, 676
BssECI	CCNNGG	4 cut(s)	167, 224, 717, 845
BssMI	GATC	2 cut(s)	148, 163
BssNI	GRCGYC	1 cut(s)	867
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	3 cut(s)	413, 809, 815
Bst6I	CTCTTC	2 cut(s)	69, 322
BstACI	GRCGYC	1 cut(s)	867
BstDEI	CTNAG	2 cut(s)	779, 834
BstDSI	CCRYGG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	656
BstHHI	GCGC	2 cut(s)	497, 658
BstKTI	GATC	2 cut(s)	151, 166
BstMAI	GTCTC	4 cut(s)	11, 419, 579, 874
BstMBI	GATC	2 cut(s)	148, 163
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	6 cut(s)	46, 269, 698, 716, 765, 897
BstSFI	CTRYAG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	2 cut(s)	645, 835
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	497, 658
Cfr10I	RCCGGY	4 cut(s)	110, 293, 641, 676
Cfr13I	GGNCC	1 cut(s)	763
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	297, 409, 916
CspAI	ACCGGT	2 cut(s)	293, 676
CviAII	CATG	3 cut(s)	168, 404, 608
CviQI	GTAC	3 cut(s)	297, 409, 916
DdeI	CTNAG	2 cut(s)	779, 834
DpnI	GATC	2 cut(s)	150, 165
DpnII	GATC	2 cut(s)	148, 163
DriI	GACNNNNNGTC	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	69, 322
Eam1105I	GACNNNNNGTC	1 cut(s)	531
EarI	CTCTTC	2 cut(s)	69, 322
Eco130I	CCWWGG	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	763
Eco88I	CYCGRG	3 cut(s)	223, 596, 919
EcoRII	CCWGG	1 cut(s)	716
EcoT14I	CCWWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	3 cut(s)	419, 579, 874
FaeI	CATG	3 cut(s)	171, 407, 611
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	3 cut(s)	167, 403, 607
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	4 cut(s)	108, 639, 659, 824
Fsp4HI	GCNGC	4 cut(s)	108, 639, 659, 824
FspBI	CTAG	1 cut(s)	933
GlaI	GCGC	2 cut(s)	496, 657
GluI	GCNGC	4 cut(s)	108, 639, 659, 824
GsuI	CTGGAG	1 cut(s)	113
HapII	CCGG	9 cut(s)	47, 111, 270, 294, 642, 677, 699, 767, 899
HhaI	GCGC	2 cut(s)	497, 658
Hin1I	GRCGYC	1 cut(s)	867
Hin1II	CATG	3 cut(s)	171, 407, 611
Hin6I	GCGC	2 cut(s)	495, 656
HinP1I	GCGC	2 cut(s)	495, 656
HincII	GTYRAC	4 cut(s)	561, 895, 904, 926
HindII	GTYRAC	4 cut(s)	561, 895, 904, 926
HindIII	AAGCTT	3 cut(s)	345, 449, 507
HinfI	GANTC	3 cut(s)	599, 781, 841
HpaI	GTTAAC	1 cut(s)	904
HpaII	CCGG	9 cut(s)	47, 111, 270, 294, 642, 677, 699, 767, 899
HphI	GGTGA	2 cut(s)	209, 821
Hpy166II	GTNNAC	4 cut(s)	561, 895, 904, 926
Hpy188I	TCNGA	4 cut(s)	66, 776, 795, 865
Hpy188III	TCNNGA	6 cut(s)	116, 252, 313, 340, 536, 596
Hpy8I	GTNNAC	4 cut(s)	561, 895, 904, 926
Hpy99I	CGWCG	5 cut(s)	319, 435, 562, 590, 593
HpyCH4III	ACNGT	3 cut(s)	413, 809, 815
HpyCH4IV	ACGT	3 cut(s)	591, 789, 867
HpyCH4V	TGCA	2 cut(s)	403, 607
HpyF3I	CTNAG	2 cut(s)	779, 834
HpySE526I	ACGT	3 cut(s)	591, 789, 867
Hsp92I	GRCGYC	1 cut(s)	867
Hsp92II	CATG	3 cut(s)	171, 407, 611
HspAI	GCGC	2 cut(s)	495, 656
KspAI	GTTAAC	1 cut(s)	904
Kzo9I	GATC	2 cut(s)	148, 163
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	376, 721
Lsp1109I	GCAGC	2 cut(s)	645, 835
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	3 cut(s)	591, 789, 867
MaeIII	GTNAC	3 cut(s)	113, 803, 809
MalI	GATC	2 cut(s)	150, 165
MboI	GATC	2 cut(s)	148, 163
MboII	GAAGA	5 cut(s)	86, 336, 339, 558, 561
MfeI	CAATTG	2 cut(s)	32, 391
MluCI	AATT	3 cut(s)	32, 391, 742
MlyI	GAGTC	2 cut(s)	608, 790
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	6 cut(s)	219, 313, 436, 672, 829, 855
Mph1103I	ATGCAT	1 cut(s)	405
MseI	TTAA	3 cut(s)	683, 852, 903
MspI	CCGG	9 cut(s)	47, 111, 270, 294, 642, 677, 699, 767, 899
MspR9I	CCNGG	6 cut(s)	48, 271, 700, 718, 767, 899
MunI	CAATTG	2 cut(s)	32, 391
MvaI	CCWGG	1 cut(s)	718
MvnI	CGCG	1 cut(s)	656
NciI	CCSGG	5 cut(s)	48, 271, 700, 767, 899
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	148, 163
NlaIII	CATG	3 cut(s)	171, 407, 611
NlaIV	GGNNCC	3 cut(s)	382, 723, 765
NmeAIII	GCCGAG	1 cut(s)	851
NmuCI	GTSAC	2 cut(s)	113, 809
NsiI	ATGCAT	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	841
PflFI	GACNNNGTC	1 cut(s)	780
PfoI	TCCNGGA	1 cut(s)	765
PinAI	ACCGGT	2 cut(s)	293, 676
PkrI	GCNGC	4 cut(s)	109, 640, 660, 825
PleI	GAGTC	2 cut(s)	607, 789
PpsI	GAGTC	2 cut(s)	607, 789
Psp1406I	AACGTT	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	3 cut(s)	382, 723, 765
PspPI	GGNCC	1 cut(s)	763
PsyI	GACNNNGTC	1 cut(s)	780
RsaI	GTAC	3 cut(s)	298, 410, 917
RsaNI	GTAC	3 cut(s)	297, 409, 916
SalI	GTCGAC	1 cut(s)	559
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	683, 852, 903
SatI	GCNGC	4 cut(s)	108, 639, 659, 824
Sau3AI	GATC	2 cut(s)	148, 163
Sau96I	GGNCC	1 cut(s)	763
SchI	GAGTC	2 cut(s)	608, 790
ScrFI	CCNGG	6 cut(s)	48, 271, 700, 718, 767, 899
SfcI	CTRYAG	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	596
SinI	GGWCC	1 cut(s)	763
SlaI	CTCGAG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	3 cut(s)	32, 391, 742
SsiI	CCGC	3 cut(s)	44, 108, 639
SspMI	CTAG	1 cut(s)	933
StyD4I	CCNGG	6 cut(s)	46, 269, 698, 716, 765, 897
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	413, 809, 815
TaiI	ACGT	3 cut(s)	594, 792, 870
TaqI	TCGA	7 cut(s)	147, 314, 420, 433, 472, 560, 597
TaqII	GACCGA	1 cut(s)	751
TasI	AATT	3 cut(s)	32, 391, 742
TauI	GCSGC	2 cut(s)	110, 641
TfiI	GAWTC	1 cut(s)	841
Tru1I	TTAA	3 cut(s)	683, 852, 903
Tru9I	TTAA	3 cut(s)	683, 852, 903
TseFI	GTSAC	2 cut(s)	113, 809
TseI	GCWGC	2 cut(s)	658, 823
Tsp45I	GTSAC	2 cut(s)	113, 809
TspDTI	ATGAA	1 cut(s)	636
TspGWI	ACGGA	3 cut(s)	314, 332, 921
Tth111I	GACNNNGTC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	763
XapI	RAATTY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	732
XhoI	CTCGAG	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	560
XspI	CTAG	1 cut(s)	933
ZraI	GACGTC	1 cut(s)	868
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.