Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013046

Physical Location & Seq

Genomic Coordinates Reverse (-)

18296428 .. 18297662

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGTGTGCCGGAAACCGACCCTCTTTCTCAGCTGAGCCTGCCGCCGGGGTTTCGATTCTATCCGACGGACGAGGAGCTTCTGGTTCAGTACCTCTGCCGCAAGGTTGCTGGGTACCAATTCAATCTGCAAATAATTGCTGAAATTGATCTTTCCAAGTTTGATCCTTGGGTTTTACCAAGCAAAGCGATATTTGGGGAAAAAGAATGGTACTTTTTCAGTCCGAGGGACCGGAAATACCCGAATGGGTCGCGACCCAATCGGGTTGCTGGGTCCGGGTACTGGAAGGCAACTGGAACTGATAAGGTTATTACAACTGAAGGTCGAAAAGTAGGGATTAAAAAAGCACTTGTTTTCTATGTGGGAAAAGCCCCAAAAGGCACCAAGACCAACTGGATTATGCACGAGTATCGCCTCATCGAGCCCTCTCGCAAAAATGGCAGCTCCAAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCAGCGGCTCGGCAGCGGCAGCGGCAGCGGCAGCACAGAAGCCCGTCACGAGCGTTTCGAGCAAAGAACACAGCAACGGCTCGTCGTCATCGTGCTCTTCTCAGCTCGACGACGTGCTCGAGTGGTTGCCGGATATTGACGACCAGAACTTCACCCTGCCCCGGATAAACTCGCTCAAGACGCTGCTGCAGCAGCAGGAGGACAGCAAGATTAATTTTCAGAACACCGGTTCCGGGAACTTCGACTGGGCGACTCTCGCCGGGCTCAACCCGGCGCCAGAACTCAATCTCAATAATCAGACTCAGCAAGGCCAAGGACAAATGAATTTGAATTTCAATAACAATGACGTCTCTCCCTTCAACCCCGCCTCTCTGCCACGTGGAATGGCCGCCGGAGAGGTTGGGAAGACGGCGGAGGAGGAGGTGCAGAGCGGACTCAGAACTCAGCGGGTGGATAACTCGAACTTCTTCCAGCAACGCTCTCAGAACATTTATTACCCGGTCCGGCCCAGCGGGTTCGGCCTCTGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

340

Amino Acids

37.82

Weight (kDa)

8.78

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca	FvH4_3g20690
malus_domestica	MD03G1222700.v1.1
prunus_persica	Prupe.4G186800_v2.0.a1
pyrus_communis	pycom03g17140 pycom11g21210
rosa_chinensis	RchiOBHm_Chr5g0034761
rosa_multiflora	Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii	Rroxscaffold_1G00045540
rosa_rugosa	Rorug05G0148400
rosa_samantha	Rh5AG240800 Rh5CG271800
rosa_wichuraiana	Rw5G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	837
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	3 cut(s)	114, 380, 760
AccBSI	CCGCTC	1 cut(s)	918
AccII	CGCG	1 cut(s)	253
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	873
AcsI	RAATTY	2 cut(s)	811, 817
AcuI	CTGAAG	1 cut(s)	339
AcvI	CACGTG	1 cut(s)	866
AcyI	GRCGYC	2 cut(s)	761, 834
AfaI	GTAC	4 cut(s)	92, 116, 212, 281
AfiI	CCNNNNNNNGG	4 cut(s)	46, 282, 648, 720
AgeI	ACCGGT	1 cut(s)	713
AgsI	TTSAA	4 cut(s)	124, 817, 823, 847
AjiI	CACGTC	1 cut(s)	601
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	4 cut(s)	34, 79, 444, 592
AluI	AGCT	4 cut(s)	34, 79, 444, 592
Alw21I	GWGCWC	2 cut(s)	584, 606
Alw26I	GTCTC	1 cut(s)	841
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	4 cut(s)	796, 873, 992, 1006
ApoI	RAATTY	2 cut(s)	811, 817
AseI	ATTAAT	1 cut(s)	699
AsiGI	ACCGGT	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	953
Asp718I	GGTACC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	4 cut(s)	229, 273, 988, 993
AsuC2I	CCSGG	7 cut(s)	48, 277, 649, 721, 748, 758, 986
AsuHPI	GGTGA	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	3 cut(s)	229, 273, 988
BanI	GGYRCC	3 cut(s)	114, 380, 760
BanII	GRGCYC	2 cut(s)	426, 753
BauI	CACGAG	2 cut(s)	404, 535
BbrPI	CACGTG	1 cut(s)	866
BbsI	GAAGAC	1 cut(s)	899
Bbv12I	GWGCWC	2 cut(s)	584, 606
BceAI	ACGGC	2 cut(s)	580, 912
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BcnI	CCSGG	7 cut(s)	48, 277, 649, 721, 748, 758, 986
BcoDI	GTCTC	1 cut(s)	841
BfmI	CTRYAG	1 cut(s)	674
BfoI	RGCGCY	1 cut(s)	764
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	7 cut(s)	48, 277, 649, 721, 748, 758, 986
Bme18I	GGWCC	3 cut(s)	229, 273, 988
BmeT110I	CYCGRG	1 cut(s)	605
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	4 cut(s)	229, 273, 988, 993
BmiI	GGNNCC	6 cut(s)	116, 230, 274, 382, 718, 762
BmrFI	CCNGG	7 cut(s)	48, 277, 649, 721, 748, 758, 986
BmrI	ACTGGG	1 cut(s)	742
BmuI	ACTGGG	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	899
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	7 cut(s)	48, 277, 649, 721, 748, 758, 986
BsaAI	YACGTR	1 cut(s)	866
BsaHI	GRCGYC	2 cut(s)	761, 834
BsaJI	CCNNGG	5 cut(s)	47, 167, 224, 647, 799
BsaWI	WCCGGW	2 cut(s)	231, 713
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 282, 648, 720
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	4 cut(s)	287, 298, 398, 737
BseDI	CCNNGG	5 cut(s)	47, 167, 224, 647, 799
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	4 cut(s)	46, 282, 648, 720
BseMII	CTCAG	7 cut(s)	26, 44, 602, 803, 937, 944, 983
BseNI	ACTGG	4 cut(s)	287, 298, 398, 737
BseRI	GAGGAG	3 cut(s)	89, 917, 920
BseYI	CCCAGC	3 cut(s)	110, 269, 995
BsgI	GTGCAG	1 cut(s)	932
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	4 cut(s)	798, 875, 994, 1008
BshNI	GGYRCC	3 cut(s)	114, 380, 760
BshTI	ACCGGT	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	584, 606
BsiHKCI	CYCGRG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	46, 282, 648, 720
BsmAI	GTCTC	1 cut(s)	841
BsmBI	CGTCTC	1 cut(s)	841
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	798, 875, 994, 1008
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	4 cut(s)	426, 584, 606, 753
Bsp143I	GATC	2 cut(s)	148, 163
Bsp1720I	GCTNAGC	1 cut(s)	35
Bsp68I	TCGCGA	1 cut(s)	253
BspANI	GGCC	4 cut(s)	798, 875, 994, 1008
BspCNI	CTCAG	7 cut(s)	27, 43, 601, 802, 936, 943, 982
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	6 cut(s)	116, 230, 274, 382, 718, 762
BspMAI	CTGCAG	1 cut(s)	678
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	2 cut(s)	479, 589
BspT107I	GGYRCC	3 cut(s)	114, 380, 760
BsrBI	CCGCTC	1 cut(s)	918
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	4 cut(s)	287, 298, 398, 737
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	5 cut(s)	47, 167, 224, 647, 799
BssMI	GATC	2 cut(s)	148, 163
BssNI	GRCGYC	2 cut(s)	761, 834
BssSI	CACGAG	2 cut(s)	404, 535
BssT1I	CCWWGG	2 cut(s)	167, 799
Bst2BI	CACGAG	2 cut(s)	404, 535
Bst6I	CTCTTC	2 cut(s)	479, 589
BstACI	GRCGYC	2 cut(s)	761, 834
BstBAI	YACGTR	1 cut(s)	866
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	7 cut(s)	30, 35, 588, 789, 923, 930, 969
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	764
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	2 cut(s)	151, 166
BstMAI	GTCTC	1 cut(s)	841
BstMBI	GATC	2 cut(s)	148, 163
BstSCI	CCNGG	7 cut(s)	46, 275, 647, 719, 746, 756, 984
BstSFI	CTRYAG	1 cut(s)	674
BstUI	CGCG	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	899
BsuRI	GGCC	4 cut(s)	798, 875, 994, 1008
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	460
BtuMI	TCGCGA	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	763
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	4 cut(s)	229, 273, 988, 993
CpoI	CGGWCCG	1 cut(s)	988
CseI	GACGC	1 cut(s)	676
Csp6I	GTAC	4 cut(s)	91, 115, 211, 280
CspAI	ACCGGT	1 cut(s)	713
CspI	CGGWCCG	1 cut(s)	988
CviQI	GTAC	4 cut(s)	91, 115, 211, 280
DdeI	CTNAG	7 cut(s)	30, 35, 588, 789, 923, 930, 969
DinI	GGCGCC	1 cut(s)	762
DpnI	GATC	2 cut(s)	150, 165
DpnII	GATC	2 cut(s)	148, 163
EaeI	YGGCCR	1 cut(s)	873
Eam1104I	CTCTTC	2 cut(s)	479, 589
EarI	CTCTTC	2 cut(s)	479, 589
EciI	GGCGGA	1 cut(s)	914
Eco130I	CCWWGG	2 cut(s)	167, 799
Eco24I	GRGCYC	2 cut(s)	426, 753
Eco47I	GGWCC	3 cut(s)	229, 273, 988
Eco57I	CTGAAG	1 cut(s)	339
Eco72I	CACGTG	1 cut(s)	866
Eco88I	CYCGRG	1 cut(s)	605
EcoT14I	CCWWGG	2 cut(s)	167, 799
EcoT38I	GRGCYC	2 cut(s)	426, 753
EgeI	GGCGCC	1 cut(s)	762
EheI	GGCGCC	1 cut(s)	762
ErhI	CCWWGG	2 cut(s)	167, 799
Esp3I	CGTCTC	1 cut(s)	841
FaiI	YATR	2 cut(s)	360, 401
FaqI	GGGAC	1 cut(s)	242
FauI	CCCGC	3 cut(s)	859, 927, 992
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	2 cut(s)	426, 753
GlaI	GCGC	1 cut(s)	762
GsaI	CCCAGC	3 cut(s)	114, 273, 999
HaeII	RGCGCY	1 cut(s)	764
HaeIII	GGCC	4 cut(s)	798, 875, 994, 1008
HgaI	GACGC	1 cut(s)	676
HhaI	GCGC	1 cut(s)	763
Hin1I	GRCGYC	2 cut(s)	761, 834
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HinfI	GANTC	4 cut(s)	57, 739, 787, 921
HphI	GGTGA	1 cut(s)	631
Hpy188I	TCNGA	6 cut(s)	66, 225, 708, 786, 926, 972
Hpy188III	TCNNGA	3 cut(s)	252, 535, 664
Hpy99I	CGWCG	4 cut(s)	70, 574, 599, 602
HpyAV	CCTTC	3 cut(s)	280, 314, 853
HpyCH4IV	ACGT	3 cut(s)	600, 834, 865
HpyCH4V	TGCA	4 cut(s)	130, 403, 676, 913
HpyF3I	CTNAG	7 cut(s)	30, 35, 588, 789, 923, 930, 969
HpySE526I	ACGT	3 cut(s)	600, 834, 865
Hsp92I	GRCGYC	2 cut(s)	761, 834
HspAI	GCGC	1 cut(s)	761
KasI	GGCGCC	1 cut(s)	760
KpnI	GGTACC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	148, 163
LguI	GCTCTTC	2 cut(s)	479, 589
LmnI	GCTCC	2 cut(s)	76, 449
MaeII	ACGT	3 cut(s)	600, 834, 865
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	2 cut(s)	150, 165
MbiI	CCGCTC	1 cut(s)	918
MboI	GATC	2 cut(s)	148, 163
MboII	GAAGA	4 cut(s)	496, 576, 904, 946
MhlI	GDGCHC	4 cut(s)	426, 584, 606, 753
MluCI	AATT	6 cut(s)	119, 135, 144, 700, 811, 817
Mly113I	GGCGCC	1 cut(s)	761
MlyI	GAGTC	3 cut(s)	733, 781, 915
MmeI	TCCRAC	2 cut(s)	89, 432
MroXI	GAANNNNTTC	1 cut(s)	953
MseI	TTAA	2 cut(s)	339, 699
MspA1I	CMGCKG	7 cut(s)	34, 492, 503, 509, 515, 934, 999
MspR9I	CCNGG	7 cut(s)	48, 277, 649, 721, 748, 758, 986
MvnI	CGCG	1 cut(s)	253
NarI	GGCGCC	1 cut(s)	761
NciI	CCSGG	7 cut(s)	48, 277, 649, 721, 748, 758, 986
NdeII	GATC	2 cut(s)	148, 163
NlaIV	GGNNCC	6 cut(s)	116, 230, 274, 382, 718, 762
NmeAIII	GCCGAG	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	532
NruI	TCGCGA	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	605
PciSI	GCTCTTC	2 cut(s)	479, 589
PcsI	WCGNNNNNNNCGW	3 cut(s)	542, 575, 603
PdmI	GAANNNNTTC	1 cut(s)	953
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	719
PinAI	ACCGGT	1 cut(s)	713
PleI	GAGTC	3 cut(s)	733, 781, 915
PluTI	GGCGCC	1 cut(s)	764
PmaCI	CACGTG	1 cut(s)	866
PmlI	CACGTG	1 cut(s)	866
PpsI	GAGTC	3 cut(s)	733, 781, 915
Ppu21I	YACGTR	1 cut(s)	866
PshBI	ATTAAT	1 cut(s)	699
PspCI	CACGTG	1 cut(s)	866
PspFI	CCCAGC	3 cut(s)	110, 269, 995
PspN4I	GGNNCC	6 cut(s)	116, 230, 274, 382, 718, 762
PspPI	GGNCC	4 cut(s)	229, 273, 988, 993
PspXI	VCTCGAGB	1 cut(s)	605
PsrI	GAACNNNNNNTAC	2 cut(s)	965, 997
PstI	CTGCAG	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	34
RruI	TCGCGA	1 cut(s)	253
RsaI	GTAC	4 cut(s)	92, 116, 212, 281
RsaNI	GTAC	4 cut(s)	91, 115, 211, 280
Rsr2I	CGGWCCG	1 cut(s)	988
RsrII	CGGWCCG	1 cut(s)	988
SapI	GCTCTTC	2 cut(s)	479, 589
SaqAI	TTAA	2 cut(s)	339, 699
Sau3AI	GATC	2 cut(s)	148, 163
Sau96I	GGNCC	4 cut(s)	229, 273, 988, 993
SchI	GAGTC	3 cut(s)	733, 781, 915
ScrFI	CCNGG	7 cut(s)	48, 277, 649, 721, 748, 758, 986
SduI	GDGCHC	4 cut(s)	426, 584, 606, 753
SfcI	CTRYAG	1 cut(s)	674
SfoI	GGCGCC	1 cut(s)	762
Sfr274I	CTCGAG	1 cut(s)	605
SinI	GGWCC	3 cut(s)	229, 273, 988
SlaI	CTCGAG	1 cut(s)	605
SmlI	CTYRAG	2 cut(s)	605, 662
SmoI	CTYRAG	2 cut(s)	605, 662
Sse9I	AATT	6 cut(s)	119, 135, 144, 700, 811, 817
SspDI	GGCGCC	1 cut(s)	760
StyD4I	CCNGG	7 cut(s)	46, 275, 647, 719, 746, 756, 984
StyI	CCWWGG	2 cut(s)	167, 799
TaiI	ACGT	3 cut(s)	603, 837, 868
TaqI	TCGA	8 cut(s)	55, 325, 420, 545, 594, 606, 729, 947
TasI	AATT	6 cut(s)	119, 135, 144, 700, 811, 817
TauI	GCSGC	7 cut(s)	46, 102, 495, 506, 512, 518, 878
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	339, 699
Tru9I	TTAA	2 cut(s)	339, 699
TseFI	GTSAC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	2 cut(s)	471, 824
TspGWI	ACGGA	1 cut(s)	83
VpaK11BI	GGWCC	3 cut(s)	229, 273, 988
VspI	ATTAAT	1 cut(s)	699
XapI	RAATTY	2 cut(s)	811, 817
XhoI	CTCGAG	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	953
ZraI	GACGTC	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.