Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006125

Physical Location & Seq

Genomic Coordinates Reverse (-)

19890935 .. 19893504

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCCTTTGTCACGGTCCCTCCTTTCGCGGAGGATCTCGAACTCTTTTAGGTTTCATCAGGGAGAGACAACGACGGCACCGGAATCCGAATCGATTCCTCCGCCGTCGAATATGGCCGGTTCTTCGTCATGGTCGGCGATGCTCCCTGAATTATTAGGCGAGATCATTCGTCGCGTGGAGGAGACTGAGGACCGTTGGCCTCAACGTCGTGATGTAGTTACTTGCGCTTGCGTTTCTAAGAAATGGAGAGAAATCACTCACGATTTCGCTAGATCCTCTCTTAACTCTGGCAAAATTACTTTCCCTTCTTGCCTCAAATTGCCAGGTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACGTTTTACTTGTATCTTGCTCTAACACCATCATTCACTGATAAGGGAAAGTTTCTTCTGGCGGCGCGGAGGTTTAGGACCGGTGCTTACACTGAGTACATCATATCACTTGATGCTGATGATTTCTCTCAAGGAAGTAATGCCTACGTCGGAAAATTAAGATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACACAACGGAGCAAAACCTTCAAATGGCAAAGCCAGTCGCAGATTTGCATCAAAGCAGATAAGCCCTCAAGTTCCAGCAGGCAACTTTGAAGTCGGTCATGTTTCTTATAAATTCAACCTTTTGAAATCAAGAGGTCCAAGAAGAATGGTAAGCACACTCCGATGCCCATCACCATCACCTTCATCATCATCCGCTGGACTCTCGTCTGACCAAAAGCCATGTGATGTAACCAAGATAATGAAAAAACCCAACAAGGATGGTTCCAGCTTGACAATACTAAAGAACAAAGCTCCTAGATGGCACGAGCACTTGCAGTGCTGGTGTCTGAACTTCCATGGACGAGTTACTGTTGCTTCGGTCAAGAACTTTCAGCTGGTTGCGACCGTTGACCAAAGTCAACCGAGCGGTAAAGGCGATGAAGAAACAGTTCTTCTACAGTTTGGTAAAGTGGGAGATGACACTTTCACTATGGATTATAGACAGCCTCTCTCTGCATTTCAGGCTTTTGCTATCTGTCTCACAAGTTTCGGCACTAAACTTGCCTGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009536 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

379

Amino Acids

42.18

Weight (kDa)

9.61

Isoelectric Point (pI)

59.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	105 - 374	1.4e-96	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53320
fragaria_vesca	FvH4_3g18240 FvH4_3g18250
malus_domestica	MD03G1243700.v1.1 MD11G1264100.v1.1
prunus_persica	Prupe.4G164400_v2.0.a1
pyrus_communis	pycom03g19050 pycom11g23260
rosa_chinensis	RchiOBHm_Chr5g0030861 RchiOBHm_Chr5g0030871
rosa_laevigata	RLG00000033258 RLG00000033259
rosa_multiflora	Rmu_sc0001974.1_g000029
rosa_roxburghii	Rroxscaffold_1G00049390 Rroxscaffold_1G00049400
rosa_rugosa	Rorug05G0121000 Rorug05G0121000
rosa_samantha	Rh5AG214000 Rh5AG214100 Rh5BG213200 Rh5BG213300 Rh5CG237000 Rh5CG237100 Rh5DG217600 Rh5DG217700
rosa_wichuraiana	Rw5G019560 Rw5G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	76
AccBSI	CCGCTC	1 cut(s)	993
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	3 cut(s)	28, 174, 445
AciI	CCGC	6 cut(s)	28, 101, 440, 445, 780, 993
AclI	AACGTT	1 cut(s)	380
AclWI	GGATC	2 cut(s)	41, 267
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	698
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	593, 611
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	609, 677, 703, 712
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	3 cut(s)	855, 878, 961
AluI	AGCT	3 cut(s)	855, 878, 961
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	4 cut(s)	59, 176, 327, 1109
AlwI	GGATC	2 cut(s)	41, 267
AoxI	GGCC	2 cut(s)	114, 197
ApoI	RAATTY	1 cut(s)	698
AsiGI	ACCGGT	1 cut(s)	458
Asp700I	GAANNNNTTC	2 cut(s)	93, 1014
AspLEI	GCGC	2 cut(s)	227, 445
AspS9I	GGNCC	6 cut(s)	15, 190, 326, 456, 555, 722
AsuHPI	GGTGA	2 cut(s)	750, 756
AvaII	GGWCC	6 cut(s)	15, 190, 326, 456, 555, 722
BanI	GGYRCC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	890
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	897
BccI	CCATC	5 cut(s)	415, 763, 769, 839, 879
BceAI	ACGGC	2 cut(s)	88, 90
BciT130I	CCWGG	1 cut(s)	324
BcoDI	GTCTC	4 cut(s)	59, 176, 327, 1109
BfaI	CTAG	3 cut(s)	270, 330, 882
BfmI	CTRYAG	1 cut(s)	1022
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	6 cut(s)	15, 190, 326, 456, 555, 722
BmgT120I	GGNCC	6 cut(s)	15, 190, 326, 456, 555, 722
BmiI	GGNNCC	4 cut(s)	17, 78, 556, 850
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	4 cut(s)	129, 481, 644, 740
BoxI	GACNNNNGTC	2 cut(s)	790, 981
BpiI	GAAGAC	1 cut(s)	377
BpuEI	CTTGAG	2 cut(s)	492, 639
Bsa29I	ATCGAT	1 cut(s)	92
BsaBI	GATNNNNATC	2 cut(s)	634, 754
BsaJI	CCNNGG	1 cut(s)	922
BsaWI	WCCGGW	2 cut(s)	79, 458
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 611
Bse118I	RCCGGY	2 cut(s)	116, 458
Bse1I	ACTGG	1 cut(s)	621
Bse8I	GATNNNNATC	2 cut(s)	634, 754
BseBI	CCWGG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	2 cut(s)	776, 850
BseJI	GATNNNNATC	2 cut(s)	634, 754
BseLI	CCNNNNNNNGG	2 cut(s)	593, 611
BseMII	CTCAG	2 cut(s)	177, 462
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	194
Bsh1236I	CGCG	3 cut(s)	28, 174, 445
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	2 cut(s)	116, 199
BshNI	GGYRCC	1 cut(s)	76
BshTI	ACCGGT	1 cut(s)	458
BshVI	ATCGAT	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	897
BsiSI	CCGG	3 cut(s)	80, 117, 459
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	2 cut(s)	593, 611
BsmAI	GTCTC	4 cut(s)	59, 176, 327, 1109
BsmFI	GGGAC	1 cut(s)	568
BsnI	GGCC	2 cut(s)	116, 199
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	4 cut(s)	33, 162, 272, 539
Bsp19I	CCATGG	1 cut(s)	922
BspACI	CCGC	6 cut(s)	28, 101, 440, 445, 780, 993
BspANI	GGCC	2 cut(s)	116, 199
BspCNI	CTCAG	2 cut(s)	178, 463
BspDI	ATCGAT	1 cut(s)	92
BspFNI	CGCG	3 cut(s)	28, 174, 445
BspLI	GGNNCC	4 cut(s)	17, 78, 556, 850
BspPI	GGATC	2 cut(s)	41, 267
BspT107I	GGYRCC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	993
BsrFI	RCCGGY	2 cut(s)	116, 458
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	2 cut(s)	116, 458
BssECI	CCNNGG	1 cut(s)	922
BssMI	GATC	4 cut(s)	33, 162, 272, 539
BssNAI	GTATAC	1 cut(s)	571
BssSI	CACGAG	1 cut(s)	890
BssT1I	CCWWGG	1 cut(s)	922
Bst1107I	GTATAC	1 cut(s)	571
Bst2BI	CACGAG	1 cut(s)	890
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	7 cut(s)	15, 194, 568, 937, 973, 1015, 1026
BstC8I	GCNNGC	3 cut(s)	229, 667, 1132
BstDEI	CTNAG	3 cut(s)	186, 237, 471
BstDSI	CCRYGG	1 cut(s)	922
BstF5I	GGATG	2 cut(s)	776, 850
BstFNI	CGCG	3 cut(s)	28, 174, 445
BstHHI	GCGC	2 cut(s)	227, 445
BstKTI	GATC	4 cut(s)	36, 165, 275, 542
BstMAI	GTCTC	4 cut(s)	59, 176, 327, 1109
BstMBI	GATC	4 cut(s)	33, 162, 272, 539
BstMCI	CGRYCG	1 cut(s)	972
BstMWI	GCNNNNNNNGC	2 cut(s)	999, 1088
BstNI	CCWGG	1 cut(s)	324
BstPAI	GACNNNNGTC	2 cut(s)	790, 981
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	1022
BstUI	CGCG	3 cut(s)	28, 174, 445
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	2 cut(s)	33, 272
BstYI	RGATCY	2 cut(s)	33, 272
BstZ17I	GTATAC	1 cut(s)	571
Bsu15I	ATCGAT	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	116, 199
BsuTUI	ATCGAT	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	922
BtgZI	GCGATG	2 cut(s)	152, 1017
BtsCI	GGATG	2 cut(s)	776, 850
BtsI	GCAGTG	1 cut(s)	908
BtsIMutI	CAGTG	4 cut(s)	353, 414, 468, 908
Cac8I	GCNNGC	3 cut(s)	229, 667, 1132
CfoI	GCGC	2 cut(s)	227, 445
Cfr10I	RCCGGY	2 cut(s)	116, 458
Cfr13I	GGNCC	6 cut(s)	15, 190, 326, 456, 555, 722
ClaI	ATCGAT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	475
CspAI	ACCGGT	1 cut(s)	458
CviAII	CATG	4 cut(s)	129, 686, 807, 923
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	3 cut(s)	186, 237, 471
DpnI	GATC	4 cut(s)	35, 164, 274, 541
DpnII	GATC	4 cut(s)	33, 162, 272, 539
EaeI	YGGCCR	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	922
Eco47I	GGWCC	6 cut(s)	15, 190, 326, 456, 555, 722
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	4 cut(s)	132, 689, 810, 926
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	4 cut(s)	128, 685, 806, 922
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	2 cut(s)	763, 857
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	3 cut(s)	270, 330, 882
GlaI	GCGC	2 cut(s)	226, 444
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	116, 199
HapII	CCGG	3 cut(s)	80, 117, 459
HhaI	GCGC	2 cut(s)	227, 445
Hin1II	CATG	4 cut(s)	132, 689, 810, 926
Hin6I	GCGC	2 cut(s)	225, 443
HinP1I	GCGC	2 cut(s)	225, 443
HincII	GTYRAC	2 cut(s)	976, 986
HindII	GTYRAC	2 cut(s)	976, 986
HinfI	GANTC	4 cut(s)	83, 89, 94, 786
HpaII	CCGG	3 cut(s)	80, 117, 459
HphI	GGTGA	2 cut(s)	750, 756
Hpy166II	GTNNAC	3 cut(s)	571, 976, 986
Hpy188I	TCNGA	6 cut(s)	88, 530, 544, 749, 796, 915
Hpy188III	TCNNGA	5 cut(s)	37, 209, 260, 717, 949
Hpy8I	GTNNAC	3 cut(s)	571, 976, 986
Hpy99I	CGWCG	5 cut(s)	76, 109, 174, 210, 530
HpyAV	CCTTC	3 cut(s)	315, 615, 777
HpyCH4III	ACNGT	7 cut(s)	15, 194, 568, 937, 973, 1015, 1026
HpyCH4IV	ACGT	3 cut(s)	205, 380, 525
HpyCH4V	TGCA	3 cut(s)	635, 901, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	999, 1088
HpyF3I	CTNAG	3 cut(s)	186, 237, 471
HpySE526I	ACGT	3 cut(s)	205, 380, 525
Hsp92II	CATG	4 cut(s)	132, 689, 810, 926
HspAI	GCGC	2 cut(s)	225, 443
Kzo9I	GATC	4 cut(s)	33, 162, 272, 539
LmnI	GCTCC	3 cut(s)	147, 596, 883
LweI	GCATC	4 cut(s)	129, 481, 644, 740
MaeI	CTAG	3 cut(s)	270, 330, 882
MaeII	ACGT	3 cut(s)	205, 380, 525
MaeIII	GTNAC	4 cut(s)	9, 217, 814, 931
MalI	GATC	4 cut(s)	35, 164, 274, 541
MbiI	CCGCTC	1 cut(s)	993
MboI	GATC	4 cut(s)	33, 162, 272, 539
MboII	GAAGA	6 cut(s)	114, 382, 425, 741, 1010, 1019
MflI	RGATCY	2 cut(s)	33, 272
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	5 cut(s)	149, 294, 317, 533, 698
MlyI	GAGTC	1 cut(s)	780
MmeI	TCCRAC	1 cut(s)	508
MroXI	GAANNNNTTC	2 cut(s)	93, 1014
MseI	TTAA	2 cut(s)	282, 536
MslI	CAYNNNNRTG	1 cut(s)	748
MspA1I	CMGCKG	2 cut(s)	782, 961
MspI	CCGG	3 cut(s)	80, 117, 459
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	3 cut(s)	28, 174, 445
MwoI	GCNNNNNNNGC	2 cut(s)	999, 1088
NcoI	CCATGG	1 cut(s)	922
NdeII	GATC	4 cut(s)	33, 162, 272, 539
NlaIII	CATG	4 cut(s)	132, 689, 810, 926
NlaIV	GGNNCC	4 cut(s)	17, 78, 556, 850
NmuCI	GTSAC	1 cut(s)	9
PdmI	GAANNNNTTC	2 cut(s)	93, 1014
PfeI	GAWTC	3 cut(s)	83, 89, 94
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
PpuMI	RGGWCCY	1 cut(s)	326
PshAI	GACNNNNGTC	2 cut(s)	790, 981
PsiI	TTATAA	1 cut(s)	696
Psp1406I	AACGTT	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	4 cut(s)	17, 78, 556, 850
PspPI	GGNCC	6 cut(s)	15, 190, 326, 456, 555, 722
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	33, 272
PvuII	CAGCTG	1 cut(s)	961
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	748
SaqAI	TTAA	2 cut(s)	282, 536
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	4 cut(s)	33, 162, 272, 539
Sau96I	GGNCC	6 cut(s)	15, 190, 326, 456, 555, 722
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	4 cut(s)	129, 481, 644, 740
SfcI	CTRYAG	1 cut(s)	1022
SinI	GGWCC	6 cut(s)	15, 190, 326, 456, 555, 722
SmiMI	CAYNNNNRTG	1 cut(s)	748
SmlI	CTYRAG	2 cut(s)	507, 654
SmoI	CTYRAG	2 cut(s)	507, 654
Sse9I	AATT	5 cut(s)	149, 294, 317, 533, 698
SsiI	CCGC	6 cut(s)	28, 101, 440, 445, 780, 993
SspMI	CTAG	3 cut(s)	270, 330, 882
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	7 cut(s)	15, 194, 568, 937, 973, 1015, 1026
TaiI	ACGT	3 cut(s)	208, 383, 528
TaqI	TCGA	3 cut(s)	38, 92, 107
TaqII	GACCGA	2 cut(s)	671, 934
TasI	AATT	5 cut(s)	149, 294, 317, 533, 698
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	83, 89, 94
Tru1I	TTAA	2 cut(s)	282, 536
Tru9I	TTAA	2 cut(s)	282, 536
TscAI	CASTG	4 cut(s)	353, 421, 475, 908
TseFI	GTSAC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	4 cut(s)	44, 759, 842, 1020
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	4 cut(s)	353, 421, 475, 908
VpaK11BI	GGWCC	6 cut(s)	15, 190, 326, 456, 555, 722
XapI	RAATTY	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	570
XmnI	GAANNNNTTC	2 cut(s)	93, 1014
XspI	CTAG	3 cut(s)	270, 330, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.