Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006125

Physical Location & Seq

Genomic Coordinates Reverse (-)

37905904 .. 37907253

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1264100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCTTAAAGCATTCACCGATAAGGGAAAGTTTCTTTTAGCAGCACGGAGATACAGGCATGGCACTAACTATGAGTATATAATATCACTTGATGCTGATGACATATCCCAAGGAAGTAATGCTTATGTGGGAAAATTAAGCTCCGATTTTCTGGGCACCAATTTTACAATCTATGACAGCCAGCCACCGCATAGTGGTGCAAAGCCTGCTAGCAGTAGGTCTACTCGTCGTTTTGCAAGCAAGCAAATAAGCCCCCAAGTTCCGGCAGGCAACTTTGAAGTTGGGCAGGTCTCTTACAAGTTCAACCTTCTAAAATCAAGAGGTCCAAGGAGGATGATTTGCCCGCTTATTTGCCCACCATCAGATGAAACTGCCATTGGAAAACCTTTGGACAATTTAAAGTTGAAGAAAACAGCTTCTACAAGTTCTGGTTACACCTTTTTGAGGAACAAAGCTCCAAGATGGCATGATCAGTTGCAGTGCTGGTGTTTGAATTTCCATGGTCGGGTCACGGTGGCATCAGTAAAGAACTTTCAACTGGTTGCAGCTGTGGACCCAAGCCAGCCAGGAGGGAAAGGAGACGAAGAAACGGCTCTCCAGTTCGGGAAAGTGGGTGATGATACATTTACCATGGATTATAGGCAGCCTTTGTCAGCGTTCCAGGCATTTGCTATTTGCCTTACCAGCTTTGGCACCAAACTGGCGTGCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009536 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

238

Amino Acids

26.14

Weight (kDa)

9.37

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	6 - 232	1.3e-83	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53320
fragaria_vesca	FvH4_3g18240 FvH4_3g18250
malus_domestica	MD03G1243700.v1.1 MD11G1264100.v1.1
prunus_persica	Prupe.4G164400_v2.0.a1
pyrus_communis	pycom03g19050 pycom11g23260
rosa_chinensis	RchiOBHm_Chr5g0030861 RchiOBHm_Chr5g0030871
rosa_laevigata	RLG00000033258 RLG00000033259
rosa_multiflora	Rmu_sc0001974.1_g000029
rosa_roxburghii	Rroxscaffold_1G00049390 Rroxscaffold_1G00049400
rosa_rugosa	Rorug05G0121000 Rorug05G0121000
rosa_samantha	Rh5AG214000 Rh5AG214100 Rh5BG213200 Rh5BG213300 Rh5CG237000 Rh5CG237100 Rh5DG217600 Rh5DG217700
rosa_wichuraiana	Rw5G019560 Rw5G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB1I	GGYRCC	2 cut(s)	155, 692
AccI	GTMKAC	1 cut(s)	221
AciI	CCGC	2 cut(s)	188, 344
AcsI	RAATTY	1 cut(s)	493
AfiI	CCNNNNNNNGG	4 cut(s)	194, 262, 444, 505
AgsI	TTSAA	5 cut(s)	278, 304, 406, 493, 536
AjnI	CCWGG	2 cut(s)	565, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	5 cut(s)	141, 416, 455, 548, 687
AluI	AGCT	5 cut(s)	141, 416, 455, 548, 687
Alw26I	GTCTC	2 cut(s)	295, 573
ApeKI	GCWGC	3 cut(s)	41, 545, 643
ApoI	RAATTY	1 cut(s)	493
AspS9I	GGNCC	2 cut(s)	323, 553
AsuHPI	GGTGA	2 cut(s)	7, 626
AsuNHI	GCTAGC	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	323, 553
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	2 cut(s)	155, 692
BbvI	GCAGC	3 cut(s)	53, 557, 655
BccI	CCATC	2 cut(s)	367, 456
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	2 cut(s)	567, 662
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	295, 573
BfaI	CTAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	3 cut(s)	42, 546, 644
BlsI	GCNGC	3 cut(s)	43, 547, 645
Bme1390I	CCNGG	2 cut(s)	567, 662
Bme18I	GGWCC	2 cut(s)	323, 553
BmgT120I	GGNCC	2 cut(s)	323, 553
BmiI	GGNNCC	3 cut(s)	157, 555, 694
BmrFI	CCNGG	2 cut(s)	567, 662
BmsI	GCATC	2 cut(s)	82, 527
BmtI	GCTAGC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	4 cut(s)	109, 326, 499, 630
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 262, 444, 505
Bse1I	ACTGG	3 cut(s)	543, 598, 705
BseBI	CCWGG	2 cut(s)	567, 662
BseDI	CCNNGG	4 cut(s)	109, 326, 499, 630
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	4 cut(s)	194, 262, 444, 505
BseNI	ACTGG	3 cut(s)	543, 598, 705
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	53, 557, 655
BshNI	GGYRCC	2 cut(s)	155, 692
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	4 cut(s)	194, 262, 444, 505
BsmAI	GTCTC	2 cut(s)	295, 573
BsmBI	CGTCTC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	469
Bsp19I	CCATGG	2 cut(s)	499, 630
BspACI	CCGC	2 cut(s)	188, 344
BspLI	GGNNCC	3 cut(s)	157, 555, 694
BspMI	ACCTGC	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	213
BspT107I	GGYRCC	2 cut(s)	155, 692
BspTNI	GGTCTC	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	543, 598, 705
BssECI	CCNNGG	4 cut(s)	109, 326, 499, 630
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	4 cut(s)	109, 326, 499, 630
Bst2UI	CCWGG	2 cut(s)	567, 662
Bst4CI	ACNGT	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	9 cut(s)	182, 207, 211, 238, 242, 268, 344, 563, 706
BstDSI	CCRYGG	2 cut(s)	499, 630
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	295, 573
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 662, 684
BstNI	CCWGG	2 cut(s)	567, 662
BstSCI	CCNGG	2 cut(s)	565, 660
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	53, 557, 655
BtgI	CCRYGG	2 cut(s)	499, 630
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	485
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	9 cut(s)	182, 207, 211, 238, 242, 268, 344, 563, 706
Cfr13I	GGNCC	2 cut(s)	323, 553
CviAII	CATG	4 cut(s)	59, 467, 500, 631
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
DraI	TTTAAA	1 cut(s)	399
Eco130I	CCWWGG	4 cut(s)	109, 326, 499, 630
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	323, 553
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	565, 660
EcoT14I	CCWWGG	4 cut(s)	109, 326, 499, 630
ErhI	CCWWGG	4 cut(s)	109, 326, 499, 630
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	4 cut(s)	62, 470, 503, 634
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	4 cut(s)	58, 466, 499, 630
FauI	CCCGC	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	3 cut(s)	42, 546, 644
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	3 cut(s)	42, 546, 644
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	3 cut(s)	42, 546, 644
GsuI	CTGGAG	1 cut(s)	581
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	4 cut(s)	62, 470, 503, 634
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	7, 626
Hpy166II	GTNNAC	2 cut(s)	222, 553
Hpy188I	TCNGA	2 cut(s)	145, 364
Hpy188III	TCNNGA	2 cut(s)	318, 604
Hpy8I	GTNNAC	2 cut(s)	222, 553
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	4 cut(s)	200, 236, 478, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 662, 684
Hsp92II	CATG	4 cut(s)	62, 470, 503, 634
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	2 cut(s)	146, 460
Lsp1109I	GCAGC	3 cut(s)	53, 557, 655
LweI	GCATC	2 cut(s)	82, 527
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	431, 508
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	2 cut(s)	418, 596
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	4 cut(s)	134, 160, 394, 493
MnlI	CCTC	4 cut(s)	314, 324, 438, 563
MseI	TTAA	3 cut(s)	6, 137, 398
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	567, 662
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	567, 662
MwoI	GCNNNNNNNGC	3 cut(s)	206, 662, 684
NcoI	CCATGG	2 cut(s)	499, 630
NdeII	GATC	1 cut(s)	469
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	4 cut(s)	62, 470, 503, 634
NlaIV	GGNNCC	3 cut(s)	157, 555, 694
NmuCI	GTSAC	1 cut(s)	508
PctI	GAATGC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	43, 547, 645
Psp6I	CCWGG	2 cut(s)	565, 660
PspGI	CCWGG	2 cut(s)	565, 660
PspN4I	GGNNCC	3 cut(s)	157, 555, 694
PspPI	GGNCC	2 cut(s)	323, 553
PvuII	CAGCTG	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	6, 137, 398
SatI	GCNGC	3 cut(s)	42, 546, 644
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	2 cut(s)	323, 553
ScrFI	CCNGG	2 cut(s)	567, 662
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	2 cut(s)	82, 527
SinI	GGWCC	2 cut(s)	323, 553
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	134, 160, 394, 493
SsiI	CCGC	2 cut(s)	188, 344
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	565, 660
StyI	CCWWGG	4 cut(s)	109, 326, 499, 630
TaaI	ACNGT	1 cut(s)	514
TasI	AATT	4 cut(s)	134, 160, 394, 493
Tru1I	TTAA	3 cut(s)	6, 137, 398
Tru9I	TTAA	3 cut(s)	6, 137, 398
TscAI	CASTG	1 cut(s)	485
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	3 cut(s)	41, 545, 643
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	323, 553
XagI	CCTNNNNNAGG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.