Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006125

Physical Location & Seq

Genomic Coordinates Reverse (-)

11672798 .. 11676527

Gene Structure 3730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCTCTACGCCGATCCTTCCTCTCCCGGAAATTCTCCAAATCCTTCCGAGAATTCAACGGCGGGAACCGCGCGGCCGACTCGGACCGGGCCGCCGACACTGTGGAGTCATCGACGGCTTCGTCTTGGTCGACGTTGCTGCCGGAGCTTCTGGGAGAGATCATACAGCGAGTGGAGGACAGCGAGGACAAGTGGCCGCACCGCCAAAACGTCGTCGCTTGCGCCTGTGTGTGTAAGCGGTGGAGAGATATTACCAAGGAGATCGTGAGAACGCCGTCCGCCAATGGCAAAATTACCTTCCCTTCTTCCCTTAAGCAGCCTGGACCATCTGATTTCCCGCATCAATGTCTAATTAAACGAAACAAGAAGACCTCAACATTTTACCTTTATCTTGCTCTTTCCCCATCATTCACAGATAAGGGAAAGTTTCTTTTAGCAGCGCGGAGATACAGGCGTGGGTCACACACTGAGTACATAATATCACTTGATGCTGATGACATATCTCAAGGAAGCAATGCTTATGTGGGAAAGTTAAGCTCGGATTTTCTGGGTACAAATTTTACAATTTATGACAGTCAGCCACCACATAGTGGTGCAAAGCCTGCAAGCAGAAGGTCCAGCCGTCGTTTTGCAAGCAAGCAAATAAGCCCCCAAGTTCCTGCAGGCAATTTTGAAGTTGGACAGGTGTCTTACAGATTCAACCTTCTAAAATCTAGAGGTCCAAGGAGGATGATTTGCCCGTTAAATTGCCCAGCCTCAGGTGAAAGCGAAAATTCTGAGATGAAGAAACCAGATTATGGAGATGGTCATAACACAGTCTTGAGGAATAAAGCTCCAAGATGGCATGATCAGTTGCAGTGCTGGTGTTTGAATTTCCATGGTCGGGTCACGGTAGCATCAGTGAAGAACTTTCAGTTGGTTGTAGCATTGGACCCGAAAGGAGATGACGAAACGGTTCTCCAGTTTGGCAAAGTGGGTGATGATACATTTACCATGGATTTTAGGCACCCCTTGTCAGCTTTTCAGGCATTTGCTATCTGCCTTACCAGCTTTGGCACGAAACTGGCGTGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009536 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

359

Amino Acids

40.11

Weight (kDa)

9.43

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	104 - 353	2.2e-94	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53320
fragaria_vesca	FvH4_3g18240 FvH4_3g18250
malus_domestica	MD03G1243700.v1.1 MD11G1264100.v1.1
prunus_persica	Prupe.4G164400_v2.0.a1
pyrus_communis	pycom03g19050 pycom11g23260
rosa_chinensis	RchiOBHm_Chr5g0030861 RchiOBHm_Chr5g0030871
rosa_laevigata	RLG00000033258 RLG00000033259
rosa_multiflora	Rmu_sc0001974.1_g000029
rosa_roxburghii	Rroxscaffold_1G00049390 Rroxscaffold_1G00049400
rosa_rugosa	Rorug05G0121000 Rorug05G0121000
rosa_samantha	Rh5AG214000 Rh5AG214100 Rh5BG213200 Rh5BG213300 Rh5CG237000 Rh5CG237100 Rh5DG217600 Rh5DG217700
rosa_wichuraiana	Rw5G019560 Rw5G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	1005
AccB7I	CCANNNNNTGG	2 cut(s)	590, 797
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	3 cut(s)	72, 74, 442
AclWI	GGATC	1 cut(s)	9
AcoI	YGGCCR	2 cut(s)	75, 194
AcsI	RAATTY	5 cut(s)	32, 53, 556, 772, 871
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	2 cut(s)	473, 553
AfiI	CCNNNNNNNGG	4 cut(s)	590, 758, 797, 883
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	58, 674, 700, 871
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
AluBI	AGCT	5 cut(s)	148, 537, 833, 1019, 1050
AluI	AGCT	5 cut(s)	148, 537, 833, 1019, 1050
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	9
AoxI	GGCC	3 cut(s)	75, 90, 194
ApeKI	GCWGC	3 cut(s)	139, 316, 437
ApoI	RAATTY	5 cut(s)	32, 53, 556, 772, 871
Asp700I	GAANNNNTTC	1 cut(s)	954
AspLEI	GCGC	3 cut(s)	74, 224, 442
AspS9I	GGNCC	6 cut(s)	85, 90, 323, 615, 719, 931
AsuC2I	CCSGG	2 cut(s)	28, 89
AsuHPI	GGTGA	2 cut(s)	773, 989
AvaII	GGWCC	5 cut(s)	85, 323, 615, 719, 931
AxyI	CCTNAGG	1 cut(s)	757
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BanI	GGYRCC	1 cut(s)	1005
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	126, 328, 449
BccI	CCATC	4 cut(s)	334, 412, 797, 834
BceAI	ACGGC	4 cut(s)	76, 132, 259, 606
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	847
BcnI	CCSGG	2 cut(s)	28, 89
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	660
BfrI	CTTAAG	1 cut(s)	311
BisI	GCNGC	6 cut(s)	75, 93, 140, 197, 317, 438
BlsI	GCNGC	6 cut(s)	76, 94, 141, 198, 318, 439
Bme1390I	CCNGG	3 cut(s)	28, 89, 321
Bme18I	GGWCC	5 cut(s)	85, 323, 615, 719, 931
BmgT120I	GGNCC	6 cut(s)	85, 90, 323, 615, 719, 931
BmiI	GGNNCC	3 cut(s)	68, 933, 1007
BmrFI	CCNGG	3 cut(s)	28, 89, 321
BmsI	GCATC	3 cut(s)	349, 478, 905
BoxI	GACNNNNGTC	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	944
BpuEI	CTTGAG	2 cut(s)	489, 841
BpuMI	CCSGG	2 cut(s)	28, 89
BsaJI	CCNNGG	4 cut(s)	255, 722, 877, 993
Bsc4I	CCNNNNNNNGG	4 cut(s)	590, 758, 797, 883
Bse1I	ACTGG	2 cut(s)	961, 1068
Bse21I	CCTNAGG	1 cut(s)	757
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	4 cut(s)	255, 722, 877, 993
BseGI	GGATG	1 cut(s)	735
BseLI	CCNNNNNNNGG	4 cut(s)	590, 758, 797, 883
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	3 cut(s)	459, 768, 771
BseNI	ACTGG	2 cut(s)	961, 1068
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	3 cut(s)	126, 328, 449
BseYI	CCCAGC	1 cut(s)	751
Bsh1236I	CGCG	3 cut(s)	72, 74, 442
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	77, 92, 196
BshNI	GGYRCC	1 cut(s)	1005
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	28, 88, 143
BslI	CCNNNNNNNGG	4 cut(s)	590, 758, 797, 883
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	3 cut(s)	77, 92, 196
Bsp143I	GATC	4 cut(s)	14, 159, 261, 847
Bsp19I	CCATGG	2 cut(s)	877, 993
BspANI	GGCC	3 cut(s)	77, 92, 196
BspCNI	CTCAG	3 cut(s)	460, 769, 770
BspFNI	CGCG	3 cut(s)	72, 74, 442
BspLI	GGNNCC	3 cut(s)	68, 933, 1007
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	1005
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	961, 1068
BssECI	CCNNGG	4 cut(s)	255, 722, 877, 993
BssMI	GATC	4 cut(s)	14, 159, 261, 847
BssT1I	CCWWGG	4 cut(s)	255, 722, 877, 993
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	5 cut(s)	103, 575, 817, 892, 955
BstAFI	CTTAAG	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstC8I	GCNNGC	6 cut(s)	220, 603, 607, 634, 638, 664
BstDEI	CTNAG	3 cut(s)	468, 757, 777
BstDSI	CCRYGG	2 cut(s)	877, 993
BstF5I	GGATG	1 cut(s)	735
BstFNI	CGCG	3 cut(s)	72, 74, 442
BstHHI	GCGC	3 cut(s)	74, 224, 442
BstKTI	GATC	4 cut(s)	17, 162, 264, 850
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	14, 159, 261, 847
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 145, 602, 1025, 1047
BstNI	CCWGG	1 cut(s)	321
BstPAI	GACNNNNGTC	1 cut(s)	685
BstSCI	CCNGG	3 cut(s)	26, 87, 319
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	3 cut(s)	72, 74, 442
BstV1I	GCAGC	3 cut(s)	126, 328, 449
BstV2I	GAAGAC	1 cut(s)	374
BstZI	CGGCCG	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	77, 92, 196
BtgI	CCRYGG	2 cut(s)	877, 993
BtsCI	GGATG	1 cut(s)	735
BtsI	GCAGTG	1 cut(s)	863
BtsIMutI	CAGTG	4 cut(s)	99, 465, 863, 906
Cac8I	GCNNGC	6 cut(s)	220, 603, 607, 634, 638, 664
CfoI	GCGC	3 cut(s)	74, 224, 442
Cfr13I	GGNCC	6 cut(s)	85, 90, 323, 615, 719, 931
CpoI	CGGWCCG	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	472, 552
CspI	CGGWCCG	1 cut(s)	85
CviAII	CATG	3 cut(s)	845, 878, 994
CviQI	GTAC	2 cut(s)	472, 552
DdeI	CTNAG	3 cut(s)	468, 757, 777
DpnI	GATC	4 cut(s)	16, 161, 263, 849
DpnII	GATC	4 cut(s)	14, 159, 261, 847
DraIII	CACNNNGTG	1 cut(s)	590
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	2 cut(s)	75, 194
EagI	CGGCCG	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	75
Eco130I	CCWWGG	4 cut(s)	255, 722, 877, 993
Eco47I	GGWCC	5 cut(s)	85, 323, 615, 719, 931
Eco52I	CGGCCG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	4 cut(s)	255, 722, 877, 993
ErhI	CCWWGG	4 cut(s)	255, 722, 877, 993
FaeI	CATG	3 cut(s)	848, 881, 997
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FatI	CATG	3 cut(s)	844, 877, 993
FauI	CCCGC	2 cut(s)	56, 345
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	6 cut(s)	75, 93, 140, 197, 317, 438
FokI	GGATG	1 cut(s)	742
Fsp4HI	GCNGC	6 cut(s)	75, 93, 140, 197, 317, 438
FspBI	CTAG	1 cut(s)	714
GlaI	GCGC	3 cut(s)	73, 223, 441
GluI	GCNGC	6 cut(s)	75, 93, 140, 197, 317, 438
GsaI	CCCAGC	1 cut(s)	755
GsuI	CTGGAG	1 cut(s)	944
HaeIII	GGCC	3 cut(s)	77, 92, 196
HapII	CCGG	3 cut(s)	28, 88, 143
HhaI	GCGC	3 cut(s)	74, 224, 442
Hin1II	CATG	3 cut(s)	848, 881, 997
Hin6I	GCGC	3 cut(s)	72, 222, 440
HinP1I	GCGC	3 cut(s)	72, 222, 440
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	3 cut(s)	80, 107, 696
HpaII	CCGG	3 cut(s)	28, 88, 143
HphI	GGTGA	2 cut(s)	773, 989
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	5 cut(s)	50, 85, 331, 541, 778
Hpy188III	TCNNGA	3 cut(s)	265, 714, 820
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	5 cut(s)	118, 136, 215, 218, 627
HpyAV	CCTTC	6 cut(s)	28, 55, 307, 312, 606, 713
HpyCH4III	ACNGT	5 cut(s)	103, 575, 817, 892, 955
HpyCH4IV	ACGT	2 cut(s)	134, 210
HpyCH4V	TGCA	5 cut(s)	596, 605, 632, 662, 856
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 145, 602, 1025, 1047
HpyF3I	CTNAG	3 cut(s)	468, 757, 777
HpySE526I	ACGT	2 cut(s)	134, 210
Hsp92II	CATG	3 cut(s)	848, 881, 997
HspAI	GCGC	3 cut(s)	72, 222, 440
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	14, 159, 261, 847
LmnI	GCTCC	2 cut(s)	145, 838
Lsp1109I	GCAGC	3 cut(s)	126, 328, 449
LweI	GCATC	3 cut(s)	349, 478, 905
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	2 cut(s)	134, 210
MaeIII	GTNAC	2 cut(s)	459, 886
MalI	GATC	4 cut(s)	16, 161, 263, 849
MboI	GATC	4 cut(s)	14, 159, 261, 847
MboII	GAAGA	4 cut(s)	297, 379, 796, 916
MlyI	GAGTC	2 cut(s)	74, 116
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	8 cut(s)	32, 169, 178, 382, 710, 720, 766, 816
MroXI	GAANNNNTTC	1 cut(s)	954
MseI	TTAA	4 cut(s)	312, 354, 533, 743
MslI	CAYNNNNRTG	1 cut(s)	591
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	3 cut(s)	28, 88, 143
MspR9I	CCNGG	3 cut(s)	28, 89, 321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	3 cut(s)	72, 74, 442
MwoI	GCNNNNNNNGC	5 cut(s)	69, 145, 602, 1025, 1047
NciI	CCSGG	2 cut(s)	28, 89
NcoI	CCATGG	2 cut(s)	877, 993
NdeII	GATC	4 cut(s)	14, 159, 261, 847
NlaIII	CATG	3 cut(s)	848, 881, 997
NlaIV	GGNNCC	3 cut(s)	68, 933, 1007
NmuCI	GTSAC	2 cut(s)	459, 886
PcsI	WCGNNNNNNNCGW	3 cut(s)	119, 128, 1064
PdmI	GAANNNNTTC	1 cut(s)	954
PfeI	GAWTC	1 cut(s)	696
PflMI	CCANNNNNTGG	2 cut(s)	590, 797
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	6 cut(s)	76, 94, 141, 198, 318, 439
PleI	GAGTC	2 cut(s)	74, 115
PpsI	GAGTC	2 cut(s)	74, 115
PshAI	GACNNNNGTC	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	68, 933, 1007
PspPI	GGNCC	6 cut(s)	85, 90, 323, 615, 719, 931
PstI	CTGCAG	1 cut(s)	664
RsaI	GTAC	2 cut(s)	473, 553
RsaNI	GTAC	2 cut(s)	472, 552
RseI	CAYNNNNRTG	1 cut(s)	591
Rsr2I	CGGWCCG	1 cut(s)	85
RsrII	CGGWCCG	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	130
SaqAI	TTAA	4 cut(s)	312, 354, 533, 743
SatI	GCNGC	6 cut(s)	75, 93, 140, 197, 317, 438
Sau3AI	GATC	4 cut(s)	14, 159, 261, 847
Sau96I	GGNCC	6 cut(s)	85, 90, 323, 615, 719, 931
SbfI	CCTGCAGG	1 cut(s)	664
SchI	GAGTC	2 cut(s)	74, 116
ScrFI	CCNGG	3 cut(s)	28, 89, 321
SdaI	CCTGCAGG	1 cut(s)	664
SfaNI	GCATC	3 cut(s)	349, 478, 905
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	5 cut(s)	85, 323, 615, 719, 931
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	3 cut(s)	311, 504, 820
SmoI	CTYRAG	3 cut(s)	311, 504, 820
Sse8387I	CCTGCAGG	1 cut(s)	664
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	26, 87, 319
StyI	CCWWGG	4 cut(s)	255, 722, 877, 993
TaaI	ACNGT	5 cut(s)	103, 575, 817, 892, 955
TaiI	ACGT	2 cut(s)	137, 213
TaqI	TCGA	2 cut(s)	113, 131
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	3 cut(s)	77, 95, 199
TfiI	GAWTC	1 cut(s)	696
Tru1I	TTAA	4 cut(s)	312, 354, 533, 743
Tru9I	TTAA	4 cut(s)	312, 354, 533, 743
TscAI	CASTG	4 cut(s)	106, 472, 863, 906
TseFI	GTSAC	2 cut(s)	459, 886
TseI	GCWGC	3 cut(s)	139, 316, 437
Tsp45I	GTSAC	2 cut(s)	459, 886
TspDTI	ATGAA	1 cut(s)	797
TspRI	CASTG	4 cut(s)	106, 472, 863, 906
Van91I	CCANNNNNTGG	2 cut(s)	590, 797
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	5 cut(s)	85, 323, 615, 719, 931
XapI	RAATTY	5 cut(s)	32, 53, 556, 772, 871
XbaI	TCTAGA	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	954
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.