RLG00000033259

Tubby-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006125
Physical Location & Seq
Reverse (-)
25053213 .. 25057019
3807 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033259

Sequence Viewer

Length: 1104 bp
ATGTCTCTGAGGAAATCCTTCCTCTCTCGGAAATTCTCCAAATCCTTCCGAGAATTCAACGGCGGCCAGGCCCGCGGCGGCGACCGGCGAGTCGTGCACGACTCGGCCGAGTTGGACCGGGTCTCGGAGAGTGTGGAGTCGACGGCGTCTTCGTGGTCGACTTTGCTGCCGGAGCTCCTGGGCGAGATCATACAGCGAGTGGAGGACAGCGAGGACAAGTGGCCGCACCGCCAAAACGTCGTCGCCTGCGCCTGTGTCTGCAAGCGGTGGAGGGATATTACCAAGGAGATCGTGAGAAAGCCTTCCGCCAATGGCAGAATTACCTTCCCTTCTTGCCTTAAGCAGCCAGGACCATCCGATTTCCCACATCAATGTCTAATAAAACGAAACAAGAAGACCTCAACGTTTTACCTTTATCTTGCTCTTACCCCAGCATTCACGGATAAGGGAAAGTTTCTGTTAGCGGCACGGAGATACAGGCGCGGGTCACACACTGAGTACATAATATCACTTGATGCTGATGACATCTCTCAAGGAAGCAATGCCTATGTGGGAAAATTAAGCTCGGATTTTCTGGGTACGAATTTTACAATTTATGATAGTCAGCCACCACATAGTGGTGCAAAGCCTGCAAGCAGAAGGTCCAGCCGCCGTTTTGCAAGCAAGCAAATAAGCCCCCAAGTTCCAGCAGGCAACTTTGAAGTTGGACAGGTGTCTTACAGATTCAACCTCCTAAAATCTAGAGGTCCAAGGAGGATGATTTGCCCACTAAATTGCCCAGCCTCAGGTGGAAGTGGAAACTCTGAGATGAAGAAACCAGATTATGGCAGTGGTCATAACACAGTCTTGAGGAATAAAGCTCCAAGATGGCATGATCAGTTACAGTGCTGGTGTTTGAATTTCCATGGTCGGGTCACAGTAGCATCAGTGAAGAACTTTCAGTTGGTTGTAGCATTGGACCCGAAAGGAGATGACGAAACGGTTCTCCAGTTTGGCAAAGTGGGTGATGATACATTTACCATGGATTTTAGGCACCCCTTGTCAGCTTTTCAGGCTTTTGCTATCTGCCTTACTAGCTTTGGCACGAAACTGGCGTGTGAGTGA

Protein Analysis

368

Amino Acids

41.07

Weight (kDa)

9.6

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 113 - 362 5.9e-94 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 1032
AccB7I CCANNNNNTGG 2 cut(s) 617, 824
AccI GTMKAC 2 cut(s) 140, 158
AccII CGCG 2 cut(s) 75, 483
AclI AACGTT 1 cut(s) 404
AcoI YGGCCR 3 cut(s) 64, 105, 221
AcsI RAATTY 4 cut(s) 32, 53, 583, 898
AcyI GRCGYC 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 2 cut(s) 500, 580
AfiI CCNNNNNNNGG 5 cut(s) 124, 617, 785, 824, 910
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 4 cut(s) 58, 701, 727, 898
AjnI CCWGG 3 cut(s) 66, 177, 346
AjuI GAANNNNNNNTTGG 2 cut(s) 926, 958
AluBI AGCT 5 cut(s) 175, 564, 860, 1046, 1077
AluI AGCT 5 cut(s) 175, 564, 860, 1046, 1077
Alw21I GWGCWC 2 cut(s) 99, 177
Alw26I GTCTC 2 cut(s) 9, 127
Alw44I GTGCAC 1 cut(s) 95
AoxI GGCC 4 cut(s) 64, 69, 105, 221
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 166, 343
ApoI RAATTY 4 cut(s) 32, 53, 583, 898
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp700I GAANNNNTTC 3 cut(s) 17, 301, 981
AspLEI GCGC 2 cut(s) 251, 483
AspS9I GGNCC 6 cut(s) 70, 115, 350, 642, 746, 958
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 1016
AvaII GGWCC 5 cut(s) 115, 350, 642, 746, 958
AxyI CCTNAGG 1 cut(s) 784
BaeGI GKGCMC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 1032
BanII GRGCYC 1 cut(s) 177
BbsI GAAGAC 2 cut(s) 141, 401
Bbv12I GWGCWC 2 cut(s) 99, 177
BbvI GCAGC 2 cut(s) 153, 355
BccI CCATC 2 cut(s) 361, 861
BceAI ACGGC 3 cut(s) 76, 159, 636
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 3 cut(s) 68, 179, 348
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 9, 127
BfaI CTAG 2 cut(s) 741, 1074
BfrI CTTAAG 1 cut(s) 338
BisI GCNGC 8 cut(s) 64, 76, 79, 167, 224, 344, 465, 649
BlsI GCNGC 8 cut(s) 65, 77, 80, 168, 225, 345, 466, 650
Bme1390I CCNGG 4 cut(s) 68, 119, 179, 348
Bme18I GGWCC 5 cut(s) 115, 350, 642, 746, 958
BmgT120I GGNCC 6 cut(s) 70, 115, 350, 642, 746, 958
BmiI GGNNCC 2 cut(s) 960, 1034
BmrFI CCNGG 4 cut(s) 68, 119, 179, 348
BmsI GCATC 2 cut(s) 505, 932
BoxI GACNNNNGTC 1 cut(s) 712
BpiI GAAGAC 2 cut(s) 141, 401
BpmI CTGGAG 1 cut(s) 971
BpuEI CTTGAG 2 cut(s) 516, 868
BpuMI CCSGG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 6 cut(s) 73, 178, 282, 749, 904, 1020
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 617, 785, 824, 910
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 988, 1095
Bse21I CCTNAGG 1 cut(s) 784
Bse3DI GCAATG 1 cut(s) 547
BseBI CCWGG 3 cut(s) 68, 179, 348
BseDI CCNNGG 6 cut(s) 73, 178, 282, 749, 904, 1020
BseGI GGATG 2 cut(s) 353, 762
BseLI CCNNNNNNNGG 5 cut(s) 124, 617, 785, 824, 910
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 3 cut(s) 486, 795, 798
BseNI ACTGG 2 cut(s) 988, 1095
BseSI GKGCMC 1 cut(s) 99
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 153, 355
BseYI CCCAGC 2 cut(s) 430, 778
Bsh1236I CGCG 2 cut(s) 75, 483
Bsh1285I CGRYCG 2 cut(s) 85, 108
BshFI GGCC 4 cut(s) 66, 71, 107, 223
BshNI GGYRCC 1 cut(s) 1032
BsiEI CGRYCG 2 cut(s) 85, 108
BsiHKAI GWGCWC 2 cut(s) 99, 177
BsiSI CCGG 3 cut(s) 85, 118, 170
BslI CCNNNNNNNGG 5 cut(s) 124, 617, 785, 824, 910
BsmAI GTCTC 2 cut(s) 9, 127
BsmI GAATGC 1 cut(s) 434
BsnI GGCC 4 cut(s) 66, 71, 107, 223
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 99, 177
Bsp143I GATC 3 cut(s) 186, 288, 874
Bsp19I CCATGG 2 cut(s) 904, 1020
BspANI GGCC 4 cut(s) 66, 71, 107, 223
BspCNI CTCAG 3 cut(s) 487, 796, 797
BspFNI CGCG 2 cut(s) 75, 483
BspLI GGNNCC 2 cut(s) 960, 1034
BspT107I GGYRCC 1 cut(s) 1032
BspTI CTTAAG 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 547
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 2 cut(s) 988, 1095
BssAI RCCGGY 1 cut(s) 84
BssECI CCNNGG 6 cut(s) 73, 178, 282, 749, 904, 1020
BssMI GATC 3 cut(s) 186, 288, 874
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 4 cut(s) 282, 749, 904, 1020
Bst2UI CCWGG 3 cut(s) 68, 179, 348
Bst4CI ACNGT 4 cut(s) 844, 885, 919, 982
BstACI GRCGYC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 8 cut(s) 73, 247, 263, 630, 634, 661, 665, 691
BstDEI CTNAG 4 cut(s) 8, 495, 784, 804
BstDSI CCRYGG 3 cut(s) 73, 904, 1020
BstF5I GGATG 2 cut(s) 353, 762
BstFNI CGCG 2 cut(s) 75, 483
BstHHI GCGC 2 cut(s) 251, 483
BstKTI GATC 3 cut(s) 189, 291, 877
BstMAI GTCTC 2 cut(s) 9, 127
BstMBI GATC 3 cut(s) 186, 288, 874
BstMCI CGRYCG 2 cut(s) 85, 108
BstMWI GCNNNNNNNGC 6 cut(s) 72, 94, 172, 629, 1052, 1074
BstNI CCWGG 3 cut(s) 68, 179, 348
BstPAI GACNNNNGTC 1 cut(s) 712
BstSCI CCNGG 4 cut(s) 66, 117, 177, 346
BstSLI GKGCMC 1 cut(s) 99
BstUI CGCG 2 cut(s) 75, 483
BstV1I GCAGC 2 cut(s) 153, 355
BstV2I GAAGAC 2 cut(s) 141, 401
BstZI CGGCCG 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 784
BsuRI GGCC 4 cut(s) 66, 71, 107, 223
BtgI CCRYGG 3 cut(s) 73, 904, 1020
BtsCI GGATG 2 cut(s) 353, 762
BtsI GCAGTG 1 cut(s) 835
BtsIMutI CAGTG 4 cut(s) 492, 835, 890, 933
Cac8I GCNNGC 8 cut(s) 73, 247, 263, 630, 634, 661, 665, 691
CfoI GCGC 2 cut(s) 251, 483
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 6 cut(s) 70, 115, 350, 642, 746, 958
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 1 cut(s) 135
Csp6I GTAC 2 cut(s) 499, 579
CviAII CATG 3 cut(s) 872, 905, 1021
CviQI GTAC 2 cut(s) 499, 579
DdeI CTNAG 4 cut(s) 8, 495, 784, 804
DpnI GATC 3 cut(s) 188, 290, 876
DpnII GATC 3 cut(s) 186, 288, 874
DraIII CACNNNGTG 1 cut(s) 617
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 3 cut(s) 64, 105, 221
EagI CGGCCG 1 cut(s) 105
EciI GGCGGA 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 4 cut(s) 282, 749, 904, 1020
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 5 cut(s) 115, 350, 642, 746, 958
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 784
EcoICRI GAGCTC 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 53
EcoRII CCWGG 3 cut(s) 66, 177, 346
EcoT14I CCWWGG 4 cut(s) 282, 749, 904, 1020
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 4 cut(s) 282, 749, 904, 1020
FaeI CATG 3 cut(s) 875, 908, 1024
FatI CATG 3 cut(s) 871, 904, 1020
FauI CCCGC 2 cut(s) 80, 476
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 2 cut(s) 140, 158
Fnu4HI GCNGC 8 cut(s) 64, 76, 79, 167, 224, 344, 465, 649
FokI GGATG 2 cut(s) 340, 769
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 8 cut(s) 64, 76, 79, 167, 224, 344, 465, 649
FspBI CTAG 2 cut(s) 741, 1074
GlaI GCGC 2 cut(s) 250, 482
GluI GCNGC 8 cut(s) 64, 76, 79, 167, 224, 344, 465, 649
GsaI CCCAGC 2 cut(s) 434, 782
GsuI CTGGAG 1 cut(s) 971
HaeIII GGCC 4 cut(s) 66, 71, 107, 223
HapII CCGG 3 cut(s) 85, 118, 170
HgaI GACGC 1 cut(s) 135
HhaI GCGC 2 cut(s) 251, 483
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 3 cut(s) 875, 908, 1024
Hin6I GCGC 2 cut(s) 249, 481
HinP1I GCGC 2 cut(s) 249, 481
HincII GTYRAC 2 cut(s) 141, 159
HindII GTYRAC 2 cut(s) 141, 159
HinfI GANTC 4 cut(s) 90, 101, 137, 723
HpaII CCGG 3 cut(s) 85, 118, 170
HphI GGTGA 1 cut(s) 1016
Hpy166II GTNNAC 3 cut(s) 97, 141, 159
Hpy188I TCNGA 7 cut(s) 9, 30, 50, 127, 358, 568, 805
Hpy188III TCNNGA 3 cut(s) 292, 741, 847
Hpy8I GTNNAC 3 cut(s) 97, 141, 159
Hpy99I CGWCG 3 cut(s) 145, 242, 245
HpyAV CCTTC 6 cut(s) 28, 55, 312, 334, 339, 633
HpyCH4III ACNGT 4 cut(s) 844, 885, 919, 982
HpyCH4IV ACGT 2 cut(s) 237, 404
HpyCH4V TGCA 5 cut(s) 97, 261, 623, 632, 659
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 94, 172, 629, 1052, 1074
HpyF3I CTNAG 4 cut(s) 8, 495, 784, 804
HpySE526I ACGT 2 cut(s) 237, 404
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 3 cut(s) 875, 908, 1024
HspAI GCGC 2 cut(s) 249, 481
Ksp22I TGATCA 1 cut(s) 874
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 3 cut(s) 186, 288, 874
LmnI GCTCC 3 cut(s) 172, 180, 865
Lsp1109I GCAGC 2 cut(s) 153, 355
LweI GCATC 2 cut(s) 505, 932
MaeI CTAG 2 cut(s) 741, 1074
MaeII ACGT 2 cut(s) 237, 404
MaeIII GTNAC 3 cut(s) 486, 879, 913
MalI GATC 3 cut(s) 188, 290, 876
MboI GATC 3 cut(s) 186, 288, 874
MboII GAAGA 4 cut(s) 141, 406, 823, 943
MhlI GDGCHC 2 cut(s) 99, 177
MluCI AATT 8 cut(s) 32, 53, 318, 557, 583, 591, 772, 898
MlyI GAGTC 3 cut(s) 95, 99, 146
MmeI TCCRAC 2 cut(s) 93, 685
MroXI GAANNNNTTC 3 cut(s) 17, 301, 981
MseI TTAA 2 cut(s) 339, 560
MslI CAYNNNNRTG 2 cut(s) 370, 618
MspA1I CMGCKG 1 cut(s) 75
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 3 cut(s) 85, 118, 170
MspR9I CCNGG 4 cut(s) 68, 119, 179, 348
Mva1269I GAATGC 1 cut(s) 434
MvaI CCWGG 3 cut(s) 68, 179, 348
MvnI CGCG 2 cut(s) 75, 483
MwoI GCNNNNNNNGC 6 cut(s) 72, 94, 172, 629, 1052, 1074
NciI CCSGG 1 cut(s) 119
NcoI CCATGG 2 cut(s) 904, 1020
NdeII GATC 3 cut(s) 186, 288, 874
NlaIII CATG 3 cut(s) 875, 908, 1024
NlaIV GGNNCC 2 cut(s) 960, 1034
NmeAIII GCCGAG 2 cut(s) 83, 133
NmuCI GTSAC 2 cut(s) 486, 913
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 149, 1091
PctI GAATGC 1 cut(s) 434
PdmI GAANNNNTTC 3 cut(s) 17, 301, 981
PfeI GAWTC 1 cut(s) 723
PflFI GACNNNGTC 2 cut(s) 119, 145
PflMI CCANNNNNTGG 2 cut(s) 617, 824
PkrI GCNGC 8 cut(s) 65, 77, 80, 168, 225, 345, 466, 650
PleI GAGTC 3 cut(s) 95, 98, 145
PpsI GAGTC 3 cut(s) 95, 98, 145
PshAI GACNNNNGTC 1 cut(s) 712
Psp124BI GAGCTC 1 cut(s) 177
Psp1406I AACGTT 1 cut(s) 404
Psp6I CCWGG 3 cut(s) 66, 177, 346
PspFI CCCAGC 2 cut(s) 430, 778
PspGI CCWGG 3 cut(s) 66, 177, 346
PspN4I GGNNCC 2 cut(s) 960, 1034
PspPI GGNCC 6 cut(s) 70, 115, 350, 642, 746, 958
PsyI GACNNNGTC 2 cut(s) 119, 145
RsaI GTAC 2 cut(s) 500, 580
RsaNI GTAC 2 cut(s) 499, 579
RseI CAYNNNNRTG 2 cut(s) 370, 618
SacI GAGCTC 1 cut(s) 177
SacII CCGCGG 1 cut(s) 76
SalI GTCGAC 2 cut(s) 139, 157
SaqAI TTAA 2 cut(s) 339, 560
SatI GCNGC 8 cut(s) 64, 76, 79, 167, 224, 344, 465, 649
Sau3AI GATC 3 cut(s) 186, 288, 874
Sau96I GGNCC 6 cut(s) 70, 115, 350, 642, 746, 958
SchI GAGTC 3 cut(s) 95, 99, 146
ScrFI CCNGG 4 cut(s) 68, 119, 179, 348
SduI GDGCHC 2 cut(s) 99, 177
SfaNI GCATC 2 cut(s) 505, 932
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 5 cut(s) 115, 350, 642, 746, 958
SmiMI CAYNNNNRTG 2 cut(s) 370, 618
SmlI CTYRAG 3 cut(s) 338, 531, 847
SmoI CTYRAG 3 cut(s) 338, 531, 847
Sse9I AATT 8 cut(s) 32, 53, 318, 557, 583, 591, 772, 898
SspMI CTAG 2 cut(s) 741, 1074
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 4 cut(s) 66, 117, 177, 346
StyI CCWWGG 4 cut(s) 282, 749, 904, 1020
TaaI ACNGT 4 cut(s) 844, 885, 919, 982
TaiI ACGT 2 cut(s) 240, 407
TaqI TCGA 2 cut(s) 140, 158
TasI AATT 8 cut(s) 32, 53, 318, 557, 583, 591, 772, 898
TatI WGTACW 1 cut(s) 498
TauI GCSGC 6 cut(s) 66, 78, 81, 226, 467, 651
TfiI GAWTC 1 cut(s) 723
Tru1I TTAA 2 cut(s) 339, 560
Tru9I TTAA 2 cut(s) 339, 560
TscAI CASTG 4 cut(s) 499, 835, 890, 933
TseFI GTSAC 2 cut(s) 486, 913
TseI GCWGC 2 cut(s) 166, 343
Tsp45I GTSAC 2 cut(s) 486, 913
TspDTI ATGAA 1 cut(s) 824
TspGWI ACGGA 2 cut(s) 455, 484
TspRI CASTG 4 cut(s) 499, 835, 890, 933
Tth111I GACNNNGTC 2 cut(s) 119, 145
Van91I CCANNNNNTGG 2 cut(s) 617, 824
Vha464I CTTAAG 1 cut(s) 338
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 5 cut(s) 115, 350, 642, 746, 958
XapI RAATTY 4 cut(s) 32, 53, 583, 898
XbaI TCTAGA 1 cut(s) 740
XmiI GTMKAC 2 cut(s) 140, 158
XmnI GAANNNNTTC 3 cut(s) 17, 301, 981
XspI CTAG 2 cut(s) 741, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.