Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006125

Physical Location & Seq

Genomic Coordinates Reverse (-)

25517100 .. 25518737

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGACTCTCCAGAACACCGAAACTCAAGATTCCTGTTCCGATTGCGATACCGTCCGCTCCGAATCGAATTCCTCTTCTTCTGAAGAAATCGAAATCGATCAGGATTCCCAGTCCGATTGCGAATCGGAGTCGCCGCTTCGTCTCCGGTATGGGACCGCCGGCGGAGAAACCAGAGTGGTGGCTGTGCATAAGAATTCGAGCTCTGGTCTGACACGGCGGGCGAGGTTCGATTCGTTTCGGGTTTTCACGGAGGCGGCGGCCCGGAAATGCGGCGGGAATCCGAATATTAAGTATGGTTGGTACGGCGGATCGAAGGATGAGATTGCTGAGATTTTGGTTCATGGATTTAGTGCTAAGAATGAAAAGGTTGGTGGTGGAATACAATTGGTTCCGGTGAAATTCGCTTTGGATGCTGCGGTGGGTTCTGGTGTTGATGAAGATGGGATGAGGCATGTGCTGCTGTGCCGGGTTATACTGGGGAAGAGTGAGTTGATGCCTAATGGTTCGGATCAAATTCGGCCCCGTTCGATTGAGTTTGATTCTGGTGTGGATAGTCTGGTGACCCCTAGGAAGTATATTGTGTGGAGTAATTTGATGAACTCGCATATCTGTCCTGCTTATGTTGTGAGCTTCAAGGCTCCTGGTTGCTTAGAGAAGTATGCAGCTCCTCCTCAGAAGTCTATTAGCTTCCTTGATCTGTTGTCTGTGCTCGCTAGGTTCTTGCCTCCTTCGAAAATGGCTGTGCTGTGCCAATTGCGTGATGATTACTGGGACAAGAAGATTACTTTAGCTGAGCTGCATCGGAAGTTGAAGCAAGAAGTTGATGGGAAGGTTCTGGCTTCTGCGATGAGATTGGTGACACCTAGACAGGCGAGTGCTGGTGCTTTTCCTGCTCCTGGAACTGTTAATTTTCCACATTTGATGAAAGTGCTGCCGTTGTTGTTACCTGCTTCGGAAATGGCTGTAGTTGCCAAATCGCGCGACGATTACTTGGCAAAGAAGATTAGCCTGGCTGAGCTGCTTCAAAGAGTGAAACTCATAGTTGGTAATGAGTTGTTGGTTGCAGCAGTCAAATCTTACAGAAGCAGCCAGCAACATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

367

Amino Acids

40.16

Weight (kDa)

8.52

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RST	PF12174	223 - 284	9.7e-08	RCD1-SRO-TAF4 (RST) plant domain
RST	PF12174	301 - 361	4.1e-10	RCD1-SRO-TAF4 (RST) plant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53320
fragaria_vesca	FvH4_3g18240 FvH4_3g18250
malus_domestica	MD03G1243700.v1.1 MD11G1264100.v1.1
prunus_persica	Prupe.4G164400_v2.0.a1
pyrus_communis	pycom03g19050 pycom11g23260
rosa_chinensis	RchiOBHm_Chr5g0030861 RchiOBHm_Chr5g0030871
rosa_laevigata	RLG00000033258 RLG00000033259
rosa_multiflora	Rmu_sc0001974.1_g000029
rosa_roxburghii	Rroxscaffold_1G00049390 Rroxscaffold_1G00049400
rosa_rugosa	Rorug05G0121000 Rorug05G0121000
rosa_samantha	Rh5AG214000 Rh5AG214100 Rh5BG213200 Rh5BG213300 Rh5CG237000 Rh5CG237100 Rh5DG217600 Rh5DG217700
rosa_wichuraiana	Rw5G019560 Rw5G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	955
AccBSI	CCGCTC	1 cut(s)	57
AccII	CGCG	2 cut(s)	979, 981
AclWI	GGATC	2 cut(s)	316, 516
AcsI	RAATTY	4 cut(s)	67, 193, 398, 513
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	896
AflIII	ACRYGT	1 cut(s)	1096
AgsI	TTSAA	3 cut(s)	634, 811, 1025
AjnI	CCWGG	3 cut(s)	640, 895, 1008
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	7 cut(s)	201, 630, 665, 687, 791, 796, 1018
AluI	AGCT	7 cut(s)	201, 630, 665, 687, 791, 796, 1018
Alw21I	GWGCWC	2 cut(s)	203, 711
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	316, 516
AoxI	GGCC	2 cut(s)	258, 518
ApeKI	GCWGC	8 cut(s)	413, 457, 662, 796, 931, 1018, 1064, 1086
ApoI	RAATTY	4 cut(s)	67, 193, 398, 513
AspA2I	CCTAGG	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	981
AspS9I	GGNCC	3 cut(s)	153, 259, 519
AsuC2I	CCSGG	2 cut(s)	262, 467
AsuHPI	GGTGA	3 cut(s)	406, 571, 868
AsuII	TTCGAA	1 cut(s)	731
AvaII	GGWCC	1 cut(s)	153
AvrII	CCTAGG	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	203, 711
BbvI	GCAGC	8 cut(s)	400, 444, 674, 783, 918, 1005, 1076, 1098
BccI	CCATC	2 cut(s)	434, 818
BceAI	ACGGC	3 cut(s)	230, 319, 919
BciT130I	CCWGG	3 cut(s)	642, 897, 1010
BcnI	CCSGG	2 cut(s)	262, 467
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	3 cut(s)	567, 714, 864
BfmI	CTRYAG	1 cut(s)	963
BfuAI	ACCTGC	1 cut(s)	955
BlnI	CCTAGG	1 cut(s)	566
BlpI	GCTNAGC	2 cut(s)	792, 1014
Bme1390I	CCNGG	5 cut(s)	262, 467, 642, 897, 1010
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	3 cut(s)	153, 259, 519
BmiI	GGNNCC	4 cut(s)	154, 390, 521, 639
BmrFI	CCNGG	5 cut(s)	262, 467, 642, 897, 1010
BmrI	ACTGGG	3 cut(s)	103, 485, 778
BmsI	GCATC	3 cut(s)	400, 483, 808
BmuI	ACTGGG	3 cut(s)	103, 485, 778
BplI	GAGNNNNNCTC	2 cut(s)	1020, 1052
Bpu1102I	GCTNAGC	2 cut(s)	792, 1014
Bpu14I	TTCGAA	1 cut(s)	731
BpuEI	CTTGAG	1 cut(s)	9
BpuMI	CCSGG	2 cut(s)	262, 467
Bsa29I	ATCGAT	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	2 cut(s)	144, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	896
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	109, 480, 773
BseBI	CCWGG	3 cut(s)	642, 897, 1010
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	3 cut(s)	322, 415, 450
BseLI	CCNNNNNNNGG	1 cut(s)	896
BseMII	CTCAG	4 cut(s)	318, 686, 783, 1005
BseNI	ACTGG	3 cut(s)	109, 480, 773
BseRI	GAGGAG	2 cut(s)	657, 660
BseXI	GCAGC	8 cut(s)	400, 444, 674, 783, 918, 1005, 1076, 1098
Bsh1236I	CGCG	2 cut(s)	979, 981
BshFI	GGCC	2 cut(s)	260, 520
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	203, 711
BsiSI	CCGG	5 cut(s)	145, 159, 262, 392, 466
BslFI	GGGAC	2 cut(s)	166, 785
BslI	CCNNNNNNNGG	1 cut(s)	896
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	166, 785
BsnI	GGCC	2 cut(s)	260, 520
Bsp119I	TTCGAA	1 cut(s)	731
Bsp1286I	GDGCHC	2 cut(s)	203, 711
Bsp143I	GATC	4 cut(s)	97, 308, 508, 694
Bsp1720I	GCTNAGC	2 cut(s)	792, 1014
BspANI	GGCC	2 cut(s)	260, 520
BspCNI	CTCAG	4 cut(s)	319, 685, 784, 1006
BspDI	ATCGAT	1 cut(s)	96
BspFNI	CGCG	2 cut(s)	979, 981
BspLI	GGNNCC	4 cut(s)	154, 390, 521, 639
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	2 cut(s)	316, 516
BspT104I	TTCGAA	1 cut(s)	731
BsrBI	CCGCTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	109, 480, 773
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	4 cut(s)	97, 308, 508, 694
BssT1I	CCWWGG	1 cut(s)	566
Bst2UI	CCWGG	3 cut(s)	642, 897, 1010
Bst4CI	ACNGT	2 cut(s)	52, 904
Bst6I	CTCTTC	2 cut(s)	79, 476
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	4 cut(s)	160, 219, 711, 1091
BstDEI	CTNAG	6 cut(s)	327, 354, 649, 672, 792, 1014
BstEII	GGTNACC	1 cut(s)	559
BstF5I	GGATG	3 cut(s)	322, 415, 450
BstFNI	CGCG	2 cut(s)	979, 981
BstHHI	GCGC	1 cut(s)	981
BstKTI	GATC	4 cut(s)	100, 311, 511, 697
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	97, 308, 508, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	410, 457, 890, 968
BstNI	CCWGG	3 cut(s)	642, 897, 1010
BstNSI	RCATGY	2 cut(s)	455, 1100
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	5 cut(s)	260, 465, 640, 895, 1008
BstSFI	CTRYAG	1 cut(s)	963
BstUI	CGCG	2 cut(s)	979, 981
BstV1I	GCAGC	8 cut(s)	400, 444, 674, 783, 918, 1005, 1076, 1098
BstXI	CCANNNNNNTGG	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	260, 520
BsuTUI	ATCGAT	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	860
BtsCI	GGATG	3 cut(s)	322, 415, 450
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	4 cut(s)	160, 219, 711, 1091
CfoI	GCGC	1 cut(s)	981
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	153, 259, 519
ClaI	ATCGAT	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	3 cut(s)	341, 452, 1097
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	6 cut(s)	327, 354, 649, 672, 792, 1014
DpnI	GATC	4 cut(s)	99, 310, 510, 696
DpnII	GATC	4 cut(s)	97, 308, 508, 694
Eam1104I	CTCTTC	2 cut(s)	79, 476
EarI	CTCTTC	2 cut(s)	79, 476
EciI	GGCGGA	2 cut(s)	177, 321
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	201
EcoO65I	GGTNACC	1 cut(s)	559
EcoRI	GAATTC	2 cut(s)	67, 193
EcoRII	CCWGG	3 cut(s)	640, 895, 1008
EcoT14I	CCWWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	566
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	3 cut(s)	344, 455, 1100
FaqI	GGGAC	2 cut(s)	166, 785
FatI	CATG	3 cut(s)	340, 451, 1096
FauI	CCCGC	2 cut(s)	210, 266
FokI	GGATG	3 cut(s)	329, 422, 457
FriOI	GRGCYC	1 cut(s)	203
FspBI	CTAG	3 cut(s)	567, 714, 864
GlaI	GCGC	1 cut(s)	980
HaeIII	GGCC	2 cut(s)	260, 520
HapII	CCGG	5 cut(s)	145, 159, 262, 392, 466
HhaI	GCGC	1 cut(s)	981
Hin1II	CATG	3 cut(s)	344, 455, 1100
Hin6I	GCGC	1 cut(s)	979
HinP1I	GCGC	1 cut(s)	979
HinfI	GANTC	9 cut(s)	4, 29, 62, 104, 122, 128, 230, 277, 539
HpaII	CCGG	5 cut(s)	145, 159, 262, 392, 466
HphI	GGTGA	3 cut(s)	406, 571, 868
Hpy188III	TCNNGA	3 cut(s)	10, 26, 101
Hpy99I	CGWCG	1 cut(s)	986
HpyAV	CCTTC	3 cut(s)	307, 738, 823
HpyCH4III	ACNGT	2 cut(s)	52, 904
HpyCH4V	TGCA	4 cut(s)	187, 662, 799, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	410, 457, 890, 968
HpyF3I	CTNAG	6 cut(s)	327, 354, 649, 672, 792, 1014
Hsp92II	CATG	3 cut(s)	344, 455, 1100
HspAI	GCGC	1 cut(s)	979
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	97, 308, 508, 694
LmnI	GCTCC	4 cut(s)	62, 643, 670, 898
Lsp1109I	GCAGC	8 cut(s)	400, 444, 674, 783, 918, 1005, 1076, 1098
LweI	GCATC	3 cut(s)	400, 483, 808
MaeI	CTAG	3 cut(s)	567, 714, 864
MaeIII	GTNAC	3 cut(s)	559, 856, 942
MalI	GATC	4 cut(s)	99, 310, 510, 696
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	4 cut(s)	97, 308, 508, 694
MboII	GAAGA	7 cut(s)	66, 69, 95, 449, 493, 790, 1012
MfeI	CAATTG	2 cut(s)	383, 752
MhlI	GDGCHC	2 cut(s)	203, 711
MluCI	AATT	8 cut(s)	67, 193, 383, 398, 513, 589, 752, 907
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	82, 216, 244, 441, 678, 681, 735
MreI	CGCCGGCG	1 cut(s)	158
MroNI	GCCGGC	1 cut(s)	158
MseI	TTAA	2 cut(s)	288, 906
MspI	CCGG	5 cut(s)	145, 159, 262, 392, 466
MspR9I	CCNGG	5 cut(s)	262, 467, 642, 897, 1010
MunI	CAATTG	2 cut(s)	383, 752
MvaI	CCWGG	3 cut(s)	642, 897, 1010
MvnI	CGCG	2 cut(s)	979, 981
MwoI	GCNNNNNNNGC	4 cut(s)	410, 457, 890, 968
NaeI	GCCGGC	1 cut(s)	160
NciI	CCSGG	2 cut(s)	262, 467
NdeII	GATC	4 cut(s)	97, 308, 508, 694
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	3 cut(s)	344, 455, 1100
NlaIV	GGNNCC	4 cut(s)	154, 390, 521, 639
NmuCI	GTSAC	2 cut(s)	559, 856
NspI	RCATGY	2 cut(s)	455, 1100
NspV	TTCGAA	1 cut(s)	731
PciI	ACATGT	1 cut(s)	1096
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	7 cut(s)	29, 62, 104, 122, 230, 277, 539
PfoI	TCCNGGA	1 cut(s)	895
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	1096
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	3 cut(s)	640, 895, 1008
PspEI	GGTNACC	1 cut(s)	559
PspGI	CCWGG	3 cut(s)	640, 895, 1008
PspN4I	GGNNCC	4 cut(s)	154, 390, 521, 639
PspPI	GGNCC	3 cut(s)	153, 259, 519
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	288, 906
Sau3AI	GATC	4 cut(s)	97, 308, 508, 694
Sau96I	GGNCC	3 cut(s)	153, 259, 519
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	5 cut(s)	262, 467, 642, 897, 1010
SduI	GDGCHC	2 cut(s)	203, 711
SfaNI	GCATC	3 cut(s)	400, 483, 808
SfcI	CTRYAG	1 cut(s)	963
SfuI	TTCGAA	1 cut(s)	731
SgrAI	CRCCGGYG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	8 cut(s)	67, 193, 383, 398, 513, 589, 752, 907
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	3 cut(s)	567, 714, 864
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	5 cut(s)	260, 465, 640, 895, 1008
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	52, 904
TaqI	TCGA	8 cut(s)	65, 90, 96, 197, 228, 311, 527, 731
TasI	AATT	8 cut(s)	67, 193, 383, 398, 513, 589, 752, 907
TauI	GCSGC	4 cut(s)	136, 257, 260, 273
TfiI	GAWTC	7 cut(s)	29, 62, 104, 122, 230, 277, 539
Tru1I	TTAA	2 cut(s)	288, 906
Tru9I	TTAA	2 cut(s)	288, 906
TseFI	GTSAC	2 cut(s)	559, 856
TseI	GCWGC	8 cut(s)	413, 457, 662, 796, 931, 1018, 1064, 1086
Tsp45I	GTSAC	2 cut(s)	559, 856
TspDTI	ATGAA	5 cut(s)	329, 375, 450, 611, 938
TspGWI	ACGGA	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	4 cut(s)	67, 193, 398, 513
XceI	RCATGY	2 cut(s)	455, 1100
XmaJI	CCTAGG	1 cut(s)	566
XspI	CTAG	3 cut(s)	567, 714, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.