Prupe.4G164400_v2.0.a1

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
9551863 .. 9555531
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G164400.1

Sequence Viewer

Length: 1152 bp
ATGTCTCTGAGGAAAGCCTTGCTCTCTCGGAAATTCTCCAAATCGTTTAGAGAATTGAAATTTCGAGACGATGATCAGGCGCGTGGTGGAGACCGCCGAGTCGCGCGCGGCGACTCGGCCGAGTTGGACCGAGTCGCGGACTATGCCGACTCGTCGTCATCGTCCTCGTGGTCGACTATGCTGCCGGAGCTCCTCGGCGAGATCATACAGAGAGTAGAGAACAGCGAGGACAAGTGGCCTAACCGCCAAAACGTCGTCGCTTGCGCCTGTGTCTGCAAGCGGTGGAGGGATATTACCAAGCAGATCGCGCGCTCGCCTTCCTACAGTGGCAAAATTACGTTCCCTTCTTGCCTTAAACAGCCAGGACCATGCGATTTTCCCCATCAATGTCTAATAAAACGAAACAAGAAGACCTCAACATTTTACCTTTATCTTGCATTTACCCCATCATTCACAGATAAGGGAAAGTTTCTTTTAGCAGCACGAAGATATAGGCGTGGCTCTCACACTGAGTATATTATATCGCTTGATGCTGATGACATATCCCAAGGAAGCAATGCTTATGTGGGAAAACTAAGCTCGGATTTTCTGGGCACCAATTTTACAATCTATGACAGCCAGCCGCCGCATACTGGTGCAAAGCCTGCTAGCAGCAGGTCTACCCGCCGTTTCGCAAGCAAGCAAATAAGCCCCCAAGTTCCAGCAGGCAACTTTGAAGTTGGGCAGGTCTCTTACAAGTTCAACCTTCTAAAATCAAGAGGTCCAAGGAGGATGGTCTGCCCGCTTAATTGCCCACCATCAGGTGAAACTGCAATTGGTAAACCTTTGGAAAAATCCAAGATGAAGAAACCAGAATCTACCAGTTCTGGCTACACCATCTTGAGGAATAAAGCTCCAAGATGGCATGATCAGTTGCAGTGCTGGTGTTTGAATTTCCATGGTCGGGTCACAGTAGCATCAGTGAAGAACTTTCAACTGGTTGCGACAGTGGACCCAAGCCAGTCAGGGGGGAAAGGAGATGAGGAAACGGTTCTTCAGTTTGGAAAAGTGGGTGATGATACGTTCACGATGGATTATAGGCAGCCCTTGTCAGCCTTCCAGGCATTTGCTATTTGCCTTACCAGCTTTGGCACAAAACTGGCTTGTGAGTAA

Protein Analysis

384

Amino Acids

42.82

Weight (kDa)

9.55

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
Acc36I ACCTGC 2 cut(s) 645, 715
AccB1I GGYRCC 1 cut(s) 593
AccI GTMKAC 2 cut(s) 173, 659
AccII CGCG 7 cut(s) 82, 104, 106, 108, 137, 308, 310
AciI CCGC 9 cut(s) 94, 108, 137, 244, 280, 623, 626, 664, 782
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 3 cut(s) 32, 59, 931
AcuI CTGAAG 1 cut(s) 1019
AfiI CCNNNNNNNGG 6 cut(s) 136, 632, 800, 882, 943, 1006
AgsI TTSAA 5 cut(s) 58, 716, 742, 931, 974
AhdI GACNNNNNGTC 1 cut(s) 154
AjnI CCWGG 2 cut(s) 361, 1098
AjuI GAANNNNNNNTTGG 2 cut(s) 798, 830
AluBI AGCT 4 cut(s) 190, 579, 893, 1125
AluI AGCT 4 cut(s) 190, 579, 893, 1125
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 4 cut(s) 9, 60, 84, 733
AoxI GGCC 2 cut(s) 117, 236
ApeKI GCWGC 4 cut(s) 181, 479, 651, 1081
ApoI RAATTY 3 cut(s) 32, 59, 931
Asp700I GAANNNNTTC 1 cut(s) 1029
AspLEI GCGC 6 cut(s) 82, 106, 108, 266, 310, 312
AspS9I GGNCC 4 cut(s) 127, 365, 761, 991
AsuHPI GGTGA 2 cut(s) 815, 1064
AsuNHI GCTAGC 1 cut(s) 647
AvaII GGWCC 4 cut(s) 127, 365, 761, 991
BaeGI GKGCMC 1 cut(s) 596
BanI GGYRCC 1 cut(s) 593
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 4 cut(s) 168, 491, 663, 1093
BccI CCATC 7 cut(s) 390, 454, 766, 805, 884, 894, 1063
BceAI ACGGC 1 cut(s) 651
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 2 cut(s) 363, 1100
BclI TGATCA 2 cut(s) 73, 907
BcoDI GTCTC 4 cut(s) 9, 60, 84, 733
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 2 cut(s) 645, 715
BglI GCCNNNNNGGC 1 cut(s) 1100
BisI GCNGC 7 cut(s) 109, 182, 480, 623, 626, 652, 1082
BlsI GCNGC 7 cut(s) 110, 183, 481, 624, 627, 653, 1083
Bme1390I CCNGG 2 cut(s) 363, 1100
Bme18I GGWCC 4 cut(s) 127, 365, 761, 991
BmeRI GACNNNNNGTC 1 cut(s) 154
BmgT120I GGNCC 4 cut(s) 127, 365, 761, 991
BmiI GGNNCC 2 cut(s) 595, 993
BmrFI CCNGG 2 cut(s) 363, 1100
BmsI GCATC 2 cut(s) 520, 965
BmtI GCTAGC 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 901
BsaI GGTCTC 2 cut(s) 84, 733
BsaJI CCNNGG 4 cut(s) 193, 547, 764, 937
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 632, 800, 882, 943, 1006
Bse1I ACTGG 5 cut(s) 637, 861, 981, 1000, 1143
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 363, 1100
BseDI CCNNGG 4 cut(s) 193, 547, 764, 937
BseGI GGATG 1 cut(s) 777
BseLI CCNNNNNNNGG 6 cut(s) 136, 632, 800, 882, 943, 1006
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 5 cut(s) 637, 861, 981, 1000, 1143
BsePI GCGCGC 2 cut(s) 104, 308
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 596
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 4 cut(s) 168, 491, 663, 1093
Bsh1236I CGCG 7 cut(s) 82, 104, 106, 108, 137, 308, 310
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 119, 238
BshNI GGYRCC 1 cut(s) 593
BsiEI CGRYCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 6 cut(s) 136, 632, 800, 882, 943, 1006
BsmAI GTCTC 4 cut(s) 9, 60, 84, 733
BsmBI CGTCTC 1 cut(s) 60
BsnI GGCC 2 cut(s) 119, 238
Bso31I GGTCTC 2 cut(s) 84, 733
Bsp1286I GDGCHC 2 cut(s) 192, 596
Bsp143I GATC 4 cut(s) 73, 201, 303, 907
Bsp19I CCATGG 1 cut(s) 937
BspACI CCGC 9 cut(s) 94, 108, 137, 244, 280, 623, 626, 664, 782
BspANI GGCC 2 cut(s) 119, 238
BspCNI CTCAG 1 cut(s) 502
BspFNI CGCG 7 cut(s) 82, 104, 106, 108, 137, 308, 310
BspLI GGNNCC 2 cut(s) 595, 993
BspMI ACCTGC 2 cut(s) 645, 715
BspOI GCTAGC 1 cut(s) 651
BspT107I GGYRCC 1 cut(s) 593
BspTNI GGTCTC 2 cut(s) 84, 733
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 5 cut(s) 637, 861, 981, 1000, 1143
BssECI CCNNGG 4 cut(s) 193, 547, 764, 937
BssHII GCGCGC 2 cut(s) 104, 308
BssMI GATC 4 cut(s) 73, 201, 303, 907
BssSI CACGAG 1 cut(s) 166
BssT1I CCWWGG 3 cut(s) 547, 764, 937
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 363, 1100
Bst4CI ACNGT 4 cut(s) 326, 952, 988, 1030
BstAPI GCANNNNNTGC 1 cut(s) 644
BstDEI CTNAG 3 cut(s) 8, 510, 575
BstDSI CCRYGG 1 cut(s) 937
BstF5I GGATG 1 cut(s) 777
BstFNI CGCG 7 cut(s) 82, 104, 106, 108, 137, 308, 310
BstHHI GCGC 6 cut(s) 82, 106, 108, 266, 310, 312
BstKTI GATC 4 cut(s) 76, 204, 306, 910
BstMAI GTCTC 4 cut(s) 9, 60, 84, 733
BstMBI GATC 4 cut(s) 73, 201, 303, 907
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 6 cut(s) 143, 187, 307, 644, 1100, 1122
BstNI CCWGG 2 cut(s) 363, 1100
BstSCI CCNGG 2 cut(s) 361, 1098
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 596
BstUI CGCG 7 cut(s) 82, 104, 106, 108, 137, 308, 310
BstV1I GCAGC 4 cut(s) 168, 491, 663, 1093
BstV2I GAAGAC 1 cut(s) 416
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 119, 238
BtgI CCRYGG 1 cut(s) 937
BtsCI GGATG 1 cut(s) 777
BtsI GCAGTG 1 cut(s) 923
BtsIMutI CAGTG 5 cut(s) 331, 507, 923, 966, 993
BveI ACCTGC 2 cut(s) 645, 715
CfoI GCGC 6 cut(s) 82, 106, 108, 266, 310, 312
Cfr13I GGNCC 4 cut(s) 127, 365, 761, 991
CviAII CATG 3 cut(s) 369, 905, 938
DdeI CTNAG 3 cut(s) 8, 510, 575
DpnI GATC 4 cut(s) 75, 203, 305, 909
DpnII GATC 4 cut(s) 73, 201, 303, 907
DrdI GACNNNNNNGTC 1 cut(s) 98
DriI GACNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
Eam1105I GACNNNNNGTC 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 3 cut(s) 547, 764, 937
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 2 cut(s) 84, 733
Eco47I GGWCC 4 cut(s) 127, 365, 761, 991
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 1019
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 361, 1098
EcoT14I CCWWGG 3 cut(s) 547, 764, 937
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 3 cut(s) 547, 764, 937
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 3 cut(s) 372, 908, 941
FalI AAGNNNNNCTT 2 cut(s) 544, 576
FatI CATG 3 cut(s) 368, 904, 937
FauI CCCGC 2 cut(s) 671, 789
FbaI TGATCA 2 cut(s) 73, 907
FblI GTMKAC 2 cut(s) 173, 659
Fnu4HI GCNGC 7 cut(s) 109, 182, 480, 623, 626, 652, 1082
FokI GGATG 1 cut(s) 784
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 7 cut(s) 109, 182, 480, 623, 626, 652, 1082
FspBI CTAG 1 cut(s) 648
GlaI GCGC 6 cut(s) 81, 105, 107, 265, 309, 311
GluI GCNGC 7 cut(s) 109, 182, 480, 623, 626, 652, 1082
HaeIII GGCC 2 cut(s) 119, 238
HapII CCGG 1 cut(s) 185
HhaI GCGC 6 cut(s) 82, 106, 108, 266, 310, 312
Hin1II CATG 3 cut(s) 372, 908, 941
Hin6I GCGC 6 cut(s) 80, 104, 106, 264, 308, 310
HinP1I GCGC 6 cut(s) 80, 104, 106, 264, 308, 310
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 5 cut(s) 99, 113, 132, 149, 854
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 815, 1064
Hpy166II GTNNAC 5 cut(s) 174, 660, 821, 991, 1065
Hpy188I TCNGA 3 cut(s) 9, 30, 583
Hpy188III TCNNGA 4 cut(s) 65, 756, 880, 1066
Hpy8I GTNNAC 5 cut(s) 174, 660, 821, 991, 1065
Hpy99I CGWCG 3 cut(s) 157, 257, 260
HpyAV CCTTC 4 cut(s) 327, 354, 755, 1105
HpyCH4III ACNGT 4 cut(s) 326, 952, 988, 1030
HpyCH4IV ACGT 3 cut(s) 252, 338, 1061
HpyCH4V TGCA 5 cut(s) 276, 437, 638, 812, 916
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 187, 307, 644, 1100, 1122
HpyF3I CTNAG 3 cut(s) 8, 510, 575
HpySE526I ACGT 3 cut(s) 252, 338, 1061
Hsp92II CATG 3 cut(s) 372, 908, 941
HspAI GCGC 6 cut(s) 80, 104, 106, 264, 308, 310
Ksp22I TGATCA 2 cut(s) 73, 907
Kzo9I GATC 4 cut(s) 73, 201, 303, 907
LmnI GCTCC 3 cut(s) 187, 195, 898
Lsp1109I GCAGC 4 cut(s) 168, 491, 663, 1093
LweI GCATC 2 cut(s) 520, 965
MaeI CTAG 1 cut(s) 648
MaeII ACGT 3 cut(s) 252, 338, 1061
MaeIII GTNAC 1 cut(s) 946
MalI GATC 4 cut(s) 75, 203, 305, 909
MauBI CGCGCGCG 1 cut(s) 104
MboI GATC 4 cut(s) 73, 201, 303, 907
MboII GAAGA 5 cut(s) 421, 498, 856, 976, 1025
MfeI CAATTG 1 cut(s) 813
MhlI GDGCHC 2 cut(s) 192, 596
MluCI AATT 8 cut(s) 32, 53, 59, 333, 598, 787, 813, 931
MlyI GAGTC 4 cut(s) 107, 108, 141, 143
MmeI TCCRAC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 1029
MseI TTAA 2 cut(s) 354, 786
MslI CAYNNNNRTG 1 cut(s) 633
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 363, 1100
MunI CAATTG 1 cut(s) 813
MvaI CCWGG 2 cut(s) 363, 1100
MvnI CGCG 7 cut(s) 82, 104, 106, 108, 137, 308, 310
MwoI GCNNNNNNNGC 6 cut(s) 143, 187, 307, 644, 1100, 1122
NcoI CCATGG 1 cut(s) 937
NdeII GATC 4 cut(s) 73, 201, 303, 907
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 3 cut(s) 372, 908, 941
NlaIV GGNNCC 2 cut(s) 595, 993
NmeAIII GCCGAG 4 cut(s) 95, 122, 145, 174
NmuCI GTSAC 1 cut(s) 946
PauI GCGCGC 2 cut(s) 104, 308
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 158
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 1 cut(s) 854
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 7 cut(s) 110, 183, 481, 624, 627, 653, 1083
PleI GAGTC 4 cut(s) 107, 107, 140, 143
PpsI GAGTC 4 cut(s) 107, 107, 140, 143
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 361, 1098
PspGI CCWGG 2 cut(s) 361, 1098
PspN4I GGNNCC 2 cut(s) 595, 993
PspPI GGNCC 4 cut(s) 127, 365, 761, 991
PsyI GACNNNGTC 1 cut(s) 131
PteI GCGCGC 2 cut(s) 104, 308
RseI CAYNNNNRTG 1 cut(s) 633
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 354, 786
SatI GCNGC 7 cut(s) 109, 182, 480, 623, 626, 652, 1082
Sau3AI GATC 4 cut(s) 73, 201, 303, 907
Sau96I GGNCC 4 cut(s) 127, 365, 761, 991
SchI GAGTC 4 cut(s) 107, 108, 141, 143
ScrFI CCNGG 2 cut(s) 363, 1100
SduI GDGCHC 2 cut(s) 192, 596
SfaNI GCATC 2 cut(s) 520, 965
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 4 cut(s) 127, 365, 761, 991
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
Sse9I AATT 8 cut(s) 32, 53, 59, 333, 598, 787, 813, 931
SsiI CCGC 9 cut(s) 94, 108, 137, 244, 280, 623, 626, 664, 782
SspMI CTAG 1 cut(s) 648
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 361, 1098
StyI CCWWGG 3 cut(s) 547, 764, 937
TaaI ACNGT 4 cut(s) 326, 952, 988, 1030
TaiI ACGT 3 cut(s) 255, 341, 1064
TaqI TCGA 2 cut(s) 64, 173
TaqII GACCGA 1 cut(s) 144
TasI AATT 8 cut(s) 32, 53, 59, 333, 598, 787, 813, 931
TauI GCSGC 3 cut(s) 111, 625, 628
TfiI GAWTC 1 cut(s) 854
Tru1I TTAA 2 cut(s) 354, 786
Tru9I TTAA 2 cut(s) 354, 786
TscAI CASTG 5 cut(s) 331, 514, 923, 966, 993
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 4 cut(s) 181, 479, 651, 1081
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 1 cut(s) 857
TspRI CASTG 5 cut(s) 331, 514, 923, 966, 993
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 4 cut(s) 127, 365, 761, 991
XapI RAATTY 3 cut(s) 32, 59, 931
XmiI GTMKAC 2 cut(s) 173, 659
XmnI GAANNNNTTC 1 cut(s) 1029
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.