pycom03g19050

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
19811300 .. 19814334
3035 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g19050.3

Sequence Viewer

Length: 1143 bp
ATGGCTCTGCGGAAAGCCTTTCTCTCCCGGAAATTCTCCAAATCGTTCAGGGAATTGTTCGGCGACGAGGATCAGGCGCGTGGTGGGGACGGCCGAGTCGTCCGAGACTCGGCCGAGTTGGACCGCGTCGCAGACTGTCCCGACTCGTCGTCGTCTTCGTGGTCGGCTATGCTCCCGGAGCTCCTCGGCGAGATCATACGGAGAGTGGAGGCTAGCGACGACAAATGGCCTCACCGCCAAAACGTGGTCGCTTGTGCCTGTGTCTGCAAGCGGTGGAGGGATATCACCAAGGAGATCGCGCGGTCGCCTTCGTACAGTGGAAAAATCACCTTCCCTTCGTGCCTTAAACAGCCAGGGCCACACGATTTTACCCACCAATGTCTAATAAAACGAAACAAGAAGACCTCAACGTTTTACCTTTATCTAGCACTTACCCCATCATTCACCGATAAGGGAAAGTTTCTTTTAGCTGCACGGAGATATAGGCATGGCTCACACACCGAGTATATAATATCACTTGATGCTGATGACATATCCCAAGGAAGCAATGCTTATGTGGGAAAATTAAGCTCAGATTTTCTGGGCACCAATTTTACAATCTATGATAGCCAGCCACCGCATAGTGGTGCAAAGCCTGCAAGCAGTAGGTCTACCCGTCGTTTTGCAAGCAAGCAAATAAGCCCCCAAGTTCCGGCAGGCAACTTTGAAGTTGGGCAAGTCTCTTACAAATTCAACCTTCTAAAATCAAGAGGTCCAAGAAGGATGATTTGCCCGCTTAATTGCCCACCATCAGATGAAATTGCCATTGAAAAACCCATGGACAAATGTAAGTTGAAGAAAACAGCTTCTACCAGTTACGGCTACACCGTCTTGAGGAACAAAGCTCCAAGATGGCATGATCAGTTGCAGTGCTGGTGTTTGAATTTCCATGGTCGGGTCACGGTGGCATCAGTAAAGAACTTTCAGCTGGTTGCAACTGGGGACCCAAGCCAGCCAGGAGGGAAAGGAGACGAAGAAACGGTTCTCCAGTTCGGGAAAGTGGGTGATGATACATTTACCATGGATTATAGGCAGCCCTTGTCAGCCTTCCAGGCATTTGCTATTTGCCTTACCAGCTTTGGCACCAAACTGGCTTGTGAGTAA

Protein Analysis

381

Amino Acids

42.45

Weight (kDa)

9.29

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccB1I GGYRCC 2 cut(s) 584, 1121
AccB7I CCANNNNNTGG 1 cut(s) 244
AccI GTMKAC 1 cut(s) 650
AccII CGCG 4 cut(s) 79, 126, 299, 301
AciI CCGC 7 cut(s) 10, 124, 235, 271, 301, 617, 773
AclI AACGTT 1 cut(s) 410
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 2 cut(s) 91, 111
AcsI RAATTY 3 cut(s) 32, 728, 922
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 6 cut(s) 109, 244, 623, 691, 873, 934
AgsI TTSAA 5 cut(s) 707, 733, 809, 835, 922
AhdI GACNNNNNGTC 1 cut(s) 148
AjnI CCWGG 3 cut(s) 352, 994, 1089
AluBI AGCT 7 cut(s) 181, 470, 570, 845, 884, 967, 1116
AluI AGCT 7 cut(s) 181, 470, 570, 845, 884, 967, 1116
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 99, 724, 1002
AlwI GGATC 1 cut(s) 78
AoxI GGCC 4 cut(s) 91, 111, 227, 356
ApeKI GCWGC 2 cut(s) 470, 1072
ApoI RAATTY 3 cut(s) 32, 728, 922
Asp700I GAANNNNTTC 1 cut(s) 1020
AspLEI GCGC 2 cut(s) 79, 301
AspS9I GGNCC 4 cut(s) 121, 356, 752, 982
AsuC2I CCSGG 2 cut(s) 28, 176
AsuHPI GGTGA 5 cut(s) 224, 277, 319, 436, 1055
AsuNHI GCTAGC 1 cut(s) 212
AvaII GGWCC 3 cut(s) 121, 752, 982
BaeGI GKGCMC 1 cut(s) 587
BanI GGYRCC 2 cut(s) 584, 1121
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 147, 407
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 457, 1084
BccI CCATC 3 cut(s) 445, 796, 885
BceAI ACGGC 2 cut(s) 106, 874
BciT130I CCWGG 3 cut(s) 354, 996, 1091
BclI TGATCA 1 cut(s) 898
BcnI CCSGG 2 cut(s) 28, 176
BcoDI GTCTC 3 cut(s) 99, 724, 1002
BfaI CTAG 2 cut(s) 213, 425
BglI GCCNNNNNGGC 1 cut(s) 1091
BisI GCNGC 2 cut(s) 471, 1073
BlsI GCNGC 2 cut(s) 472, 1074
Bme1390I CCNGG 5 cut(s) 28, 176, 354, 996, 1091
Bme18I GGWCC 3 cut(s) 121, 752, 982
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgT120I GGNCC 4 cut(s) 121, 356, 752, 982
BmiI GGNNCC 4 cut(s) 586, 983, 984, 1123
BmrFI CCNGG 5 cut(s) 28, 176, 354, 996, 1091
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 2 cut(s) 511, 956
BmtI GCTAGC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 987
BpiI GAAGAC 2 cut(s) 147, 407
BpmI CTGGAG 1 cut(s) 1010
BpuEI CTTGAG 1 cut(s) 892
BpuMI CCSGG 2 cut(s) 28, 176
BsaJI CCNNGG 7 cut(s) 184, 288, 353, 538, 816, 928, 1059
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 244, 623, 691, 873, 934
Bse1I ACTGG 4 cut(s) 852, 982, 1027, 1134
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 3 cut(s) 354, 996, 1091
BseDI CCNNGG 7 cut(s) 184, 288, 353, 538, 816, 928, 1059
BseGI GGATG 1 cut(s) 768
BseLI CCNNNNNNNGG 6 cut(s) 109, 244, 623, 691, 873, 934
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 4 cut(s) 852, 982, 1027, 1134
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 587
BseX3I CGGCCG 2 cut(s) 91, 111
BseXI GCAGC 2 cut(s) 457, 1084
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 4 cut(s) 79, 126, 299, 301
Bsh1285I CGRYCG 3 cut(s) 94, 114, 305
BshFI GGCC 4 cut(s) 93, 113, 229, 358
BshNI GGYRCC 2 cut(s) 584, 1121
BsiEI CGRYCG 3 cut(s) 94, 114, 305
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 3 cut(s) 28, 176, 692
BslFI GGGAC 3 cut(s) 101, 123, 995
BslI CCNNNNNNNGG 6 cut(s) 109, 244, 623, 691, 873, 934
BsmAI GTCTC 3 cut(s) 99, 724, 1002
BsmBI CGTCTC 1 cut(s) 1002
BsmFI GGGAC 3 cut(s) 101, 123, 995
BsnI GGCC 4 cut(s) 93, 113, 229, 358
Bsp1286I GDGCHC 2 cut(s) 183, 587
Bsp143I GATC 4 cut(s) 70, 192, 294, 898
Bsp19I CCATGG 3 cut(s) 816, 928, 1059
BspACI CCGC 7 cut(s) 10, 124, 235, 271, 301, 617, 773
BspANI GGCC 4 cut(s) 93, 113, 229, 358
BspCNI CTCAG 1 cut(s) 584
BspFNI CGCG 4 cut(s) 79, 126, 299, 301
BspLI GGNNCC 4 cut(s) 586, 983, 984, 1123
BspOI GCTAGC 1 cut(s) 216
BspPI GGATC 1 cut(s) 78
BspT107I GGYRCC 2 cut(s) 584, 1121
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 4 cut(s) 852, 982, 1027, 1134
BssECI CCNNGG 7 cut(s) 184, 288, 353, 538, 816, 928, 1059
BssMI GATC 4 cut(s) 70, 192, 294, 898
BssT1I CCWWGG 5 cut(s) 288, 538, 816, 928, 1059
Bst2UI CCWGG 3 cut(s) 354, 996, 1091
Bst4CI ACNGT 5 cut(s) 137, 317, 868, 943, 1021
BstAPI GCANNNNNTGC 1 cut(s) 635
BstDEI CTNAG 1 cut(s) 571
BstDSI CCRYGG 3 cut(s) 816, 928, 1059
BstF5I GGATG 1 cut(s) 768
BstFNI CGCG 4 cut(s) 79, 126, 299, 301
BstHHI GCGC 2 cut(s) 79, 301
BstKTI GATC 4 cut(s) 73, 195, 297, 901
BstMAI GTCTC 3 cut(s) 99, 724, 1002
BstMBI GATC 4 cut(s) 70, 192, 294, 898
BstMCI CGRYCG 3 cut(s) 94, 114, 305
BstMWI GCNNNNNNNGC 4 cut(s) 178, 635, 1091, 1113
BstNI CCWGG 3 cut(s) 354, 996, 1091
BstSCI CCNGG 5 cut(s) 26, 174, 352, 994, 1089
BstSLI GKGCMC 1 cut(s) 587
BstUI CGCG 4 cut(s) 79, 126, 299, 301
BstV1I GCAGC 2 cut(s) 457, 1084
BstV2I GAAGAC 2 cut(s) 147, 407
BstZI CGGCCG 2 cut(s) 91, 111
BsuRI GGCC 4 cut(s) 93, 113, 229, 358
BtgI CCRYGG 3 cut(s) 816, 928, 1059
BtsCI GGATG 1 cut(s) 768
BtsI GCAGTG 1 cut(s) 914
BtsIMutI CAGTG 2 cut(s) 322, 914
CfoI GCGC 2 cut(s) 79, 301
Cfr13I GGNCC 4 cut(s) 121, 356, 752, 982
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 313
CviAII CATG 5 cut(s) 488, 817, 896, 929, 1060
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 571
DpnI GATC 4 cut(s) 72, 194, 296, 900
DpnII GATC 4 cut(s) 70, 192, 294, 898
DrdI GACNNNNNNGTC 1 cut(s) 95
DriI GACNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 2 cut(s) 91, 111
EagI CGGCCG 2 cut(s) 91, 111
Eam1105I GACNNNNNGTC 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 181
EclXI CGGCCG 2 cut(s) 91, 111
Eco130I CCWWGG 5 cut(s) 288, 538, 816, 928, 1059
Eco24I GRGCYC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 3 cut(s) 121, 752, 982
Eco52I CGGCCG 2 cut(s) 91, 111
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 982
EcoRII CCWGG 3 cut(s) 352, 994, 1089
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 5 cut(s) 288, 538, 816, 928, 1059
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 5 cut(s) 288, 538, 816, 928, 1059
Esp3I CGTCTC 1 cut(s) 1002
FaeI CATG 5 cut(s) 491, 820, 899, 932, 1063
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 3 cut(s) 101, 123, 995
FatI CATG 5 cut(s) 487, 816, 895, 928, 1059
FauI CCCGC 1 cut(s) 780
FbaI TGATCA 1 cut(s) 898
FblI GTMKAC 1 cut(s) 650
Fnu4HI GCNGC 2 cut(s) 471, 1073
FokI GGATG 1 cut(s) 775
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 471, 1073
FspBI CTAG 2 cut(s) 213, 425
GlaI GCGC 2 cut(s) 78, 300
GluI GCNGC 2 cut(s) 471, 1073
GsuI CTGGAG 1 cut(s) 1010
HaeIII GGCC 4 cut(s) 93, 113, 229, 358
HapII CCGG 3 cut(s) 28, 176, 692
HgaI GACGC 1 cut(s) 115
HhaI GCGC 2 cut(s) 79, 301
Hin1II CATG 5 cut(s) 491, 820, 899, 932, 1063
Hin6I GCGC 2 cut(s) 77, 299
HinP1I GCGC 2 cut(s) 77, 299
HinfI GANTC 3 cut(s) 96, 107, 143
HpaII CCGG 3 cut(s) 28, 176, 692
HphI GGTGA 5 cut(s) 224, 277, 319, 436, 1055
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 3 cut(s) 104, 574, 793
Hpy188III TCNNGA 4 cut(s) 140, 747, 871, 1033
Hpy8I GTNNAC 1 cut(s) 651
Hpy99I CGWCG 6 cut(s) 68, 131, 151, 154, 221, 660
HpyAV CCTTC 6 cut(s) 318, 340, 345, 746, 753, 1096
HpyCH4III ACNGT 5 cut(s) 137, 317, 868, 943, 1021
HpyCH4IV ACGT 2 cut(s) 243, 410
HpyCH4V TGCA 7 cut(s) 267, 473, 629, 638, 665, 907, 974
HpyF10VI GCNNNNNNNGC 4 cut(s) 178, 635, 1091, 1113
HpyF3I CTNAG 1 cut(s) 571
HpySE526I ACGT 2 cut(s) 243, 410
Hsp92II CATG 5 cut(s) 491, 820, 899, 932, 1063
HspAI GCGC 2 cut(s) 77, 299
KflI GGGWCCC 1 cut(s) 982
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 4 cut(s) 70, 192, 294, 898
LmnI GCTCC 4 cut(s) 177, 178, 186, 889
Lsp1109I GCAGC 2 cut(s) 457, 1084
LweI GCATC 2 cut(s) 511, 956
MaeI CTAG 2 cut(s) 213, 425
MaeII ACGT 2 cut(s) 243, 410
MaeIII GTNAC 2 cut(s) 854, 937
MalI GATC 4 cut(s) 72, 194, 296, 900
MboI GATC 4 cut(s) 70, 192, 294, 898
MboII GAAGA 4 cut(s) 147, 412, 847, 1025
MhlI GDGCHC 2 cut(s) 183, 587
MluCI AATT 8 cut(s) 32, 53, 563, 589, 728, 778, 798, 922
MlyI GAGTC 3 cut(s) 101, 105, 137
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 9 cut(s) 61, 194, 202, 240, 270, 415, 743, 867, 992
MroXI GAANNNNTTC 1 cut(s) 1020
MseI TTAA 3 cut(s) 345, 566, 777
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 967
MspI CCGG 3 cut(s) 28, 176, 692
MspR9I CCNGG 5 cut(s) 28, 176, 354, 996, 1091
MvaI CCWGG 3 cut(s) 354, 996, 1091
MvnI CGCG 4 cut(s) 79, 126, 299, 301
MwoI GCNNNNNNNGC 4 cut(s) 178, 635, 1091, 1113
NciI CCSGG 2 cut(s) 28, 176
NcoI CCATGG 3 cut(s) 816, 928, 1059
NdeII GATC 4 cut(s) 70, 192, 294, 898
NheI GCTAGC 1 cut(s) 212
NlaIII CATG 5 cut(s) 491, 820, 899, 932, 1063
NlaIV GGNNCC 4 cut(s) 586, 983, 984, 1123
NmeAIII GCCGAG 4 cut(s) 89, 119, 139, 165
NmuCI GTSAC 1 cut(s) 937
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 155, 864
PdmI GAANNNNTTC 1 cut(s) 1020
PflFI GACNNNGTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 244
PfoI TCCNGGA 2 cut(s) 26, 174
PkrI GCNGC 2 cut(s) 472, 1074
PleI GAGTC 3 cut(s) 101, 104, 137
PpsI GAGTC 3 cut(s) 101, 104, 137
PpuMI RGGWCCY 1 cut(s) 982
Psp124BI GAGCTC 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 982
Psp6I CCWGG 3 cut(s) 352, 994, 1089
PspGI CCWGG 3 cut(s) 352, 994, 1089
PspN4I GGNNCC 4 cut(s) 586, 983, 984, 1123
PspPI GGNCC 4 cut(s) 121, 356, 752, 982
PspPPI RGGWCCY 1 cut(s) 982
PsyI GACNNNGTC 1 cut(s) 125
PvuII CAGCTG 1 cut(s) 967
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 624
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 345, 566, 777
SatI GCNGC 2 cut(s) 471, 1073
Sau3AI GATC 4 cut(s) 70, 192, 294, 898
Sau96I GGNCC 4 cut(s) 121, 356, 752, 982
SchI GAGTC 3 cut(s) 101, 105, 137
ScrFI CCNGG 5 cut(s) 28, 176, 354, 996, 1091
SduI GDGCHC 2 cut(s) 183, 587
SfaNI GCATC 2 cut(s) 511, 956
SinI GGWCC 3 cut(s) 121, 752, 982
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
Sse9I AATT 8 cut(s) 32, 53, 563, 589, 728, 778, 798, 922
SsiI CCGC 7 cut(s) 10, 124, 235, 271, 301, 617, 773
SspMI CTAG 2 cut(s) 213, 425
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 5 cut(s) 26, 174, 352, 994, 1089
StyI CCWWGG 5 cut(s) 288, 538, 816, 928, 1059
TaaI ACNGT 5 cut(s) 137, 317, 868, 943, 1021
TaiI ACGT 2 cut(s) 246, 413
TasI AATT 8 cut(s) 32, 53, 563, 589, 728, 778, 798, 922
Tru1I TTAA 3 cut(s) 345, 566, 777
Tru9I TTAA 3 cut(s) 345, 566, 777
TscAI CASTG 2 cut(s) 322, 914
TseFI GTSAC 1 cut(s) 937
TseI GCWGC 2 cut(s) 470, 1072
Tsp45I GTSAC 1 cut(s) 937
TspDTI ATGAA 1 cut(s) 810
TspGWI ACGGA 2 cut(s) 214, 490
TspRI CASTG 2 cut(s) 322, 914
Tth111I GACNNNGTC 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 3 cut(s) 121, 752, 982
XapI RAATTY 3 cut(s) 32, 728, 922
XmiI GTMKAC 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 1020
XspI CTAG 2 cut(s) 213, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.