Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004081

Physical Location & Seq

Genomic Coordinates Reverse (-)

19951006 .. 19954325

Gene Structure 3320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGTCAGTGGAAAGATCTTTGGAAGCTTGGGAAGAAGTTCAGAGACATGGACAAGACTTAGCTGACCGACTTGCTCAGGGCTTTAACGGTTTGATTCAAATCAACCCACCTTCATTTCCATCGAAGCTATTTGATCTTGAGTTCTCTAGTCAGCATTTCGGGATTAGGGATTCTAGGTTTTCTATCCACCAACCCATCAATGGCGTTTCGGCTATTCTTGATATTGGGAACAAGATTGGTCAAGCGGGTGTTGATTTTGGCTCTGGATTGAATGTGATGGTTCAGCAGTTCTTCAGAAGGTTGCCTGTACCGTTCCGACACGATGAGAACGTGTTTGTTTCTACTGAGAGAGATACTGTCACGAGGAGCCATAGGGCTTATGTAGACACAAAGGAGAACTCAGCGTTTTCTAAGACAGATACTGCTTCCTCTGGTACTGTGTATGAGGAGAAAGTTACAGAATTCGATTTAAGGACTATTGGATTACATAGGAGAGCAAAGGGAACGGTTGAGCTATCATCAAGTTATGAAACTAGGACAAGTAGTATGGAACATTCGTTAGCAGCCAGGGGAGATCTTTGGAGAGTAGAAGCTTCTACTTCAAATTCCCCTGTGAGAGATGATAGCTCGTCTCTCTTTCTACTCCAGCTTGGACCTCTGTTATTTCTGCGCGATTCAACTCTTCTTTTGCCTGTTCATTTATCAAAGCAACACTTGCTCTGGTACGGATATGATAGAAAGAAAGGTATGCATTCACTGTGTCCAGCTTTGTGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTCTGCCTCAATCCTTTAGATTGCTCATTTGTAGACTTGCAATTCCCAAATGGACAATTAACATATGTTTCTGGTGAGGGATTGACGACAAGTGTCTTTGTTCCTTTATGCGGCGGTCTCCTTCAAGCGCAAGGTCAATATCCAGGAGATATGAGATTCAGTTTCTCTTGCAAGAGTAAACAGGGAACACGAATCACACCGATGATAAACTGGCCTGACAAATCATTGGCATTGGGTGTTTCTCAAGCCTTGGCTTGGCGTAGGTCCGGTGTCATGTTGAAACCTGCAATTCAACTTAGTGTGTGCTCTACATTTGGTGGAAGCAATCCCGGGATTAAAACCGAAGTTATTCAGTCGTTGAATGATAATATCAATATGATATGTGGCTGTGCATTCACAGCTCATCCTTCAACATTTGCATCTGTTTCCTTTGGTCGGTCTAAGTGGAATGGGAACATTGGACGAACAGGAATAGTTGTTAGAGCTGATACTCCTCTTCCAAACGTTGCTCGACCTTCTTTCTCCATTCAGATCAACAATGCTTTCGAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

453

Amino Acids

50.34

Weight (kDa)

8.87

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53450 AT1G53450 AT1G53450 AT3G14830 AT3G14830 AT3G14830 AT3G14830
fragaria_vesca	FvH4_3g17970 FvH4_3g17970 FvH4_3g17970 FvH4_3g17970 FvH4_3g17970
malus_domestica	MD03G1246300.v1.1 MD11G1267300.v1.1
prunus_persica	Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1
pyrus_communis	pycom03g19530 pycom11g23510
rosa_chinensis	RchiOBHm_Chr5g0030011
rosa_laevigata	RLG00000033209
rosa_multiflora	Rmu_sc0003368.1_g000012 Rmu_sc0004542.1_g000029
rosa_roxburghii	Rroxscaffold_1G00050010 Rroxscaffold_2G00118380 Rroxscaffold_2G00118390
rosa_rugosa	Rorug05G0116400
rosa_samantha	Rh5AG209400 Rh5BG208300 Rh5CG232100 Rh5DG212700
rosa_wichuraiana	Rw5G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1099
AccI	GTMKAC	2 cut(s)	384, 840
AccII	CGCG	1 cut(s)	672
AciI	CCGC	3 cut(s)	245, 918, 921
AclI	AACGTT	1 cut(s)	1311
AcsI	RAATTY	2 cut(s)	461, 604
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	3 cut(s)	309, 436, 725
AfiI	CCNNNNNNNGG	4 cut(s)	200, 917, 1062, 1242
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	9 cut(s)	98, 271, 603, 678, 932, 1087, 1100, 1168, 1218
AjnI	CCWGG	2 cut(s)	566, 949
Alw21I	GWGCWC	1 cut(s)	1115
Alw26I	GTCTC	3 cut(s)	37, 636, 929
AlwNI	CAGNNNCTG	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	1136
AoxI	GGCC	1 cut(s)	1019
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	2 cut(s)	461, 604
Asp700I	GAANNNNTTC	2 cut(s)	36, 1155
AspLEI	GCGC	2 cut(s)	672, 937
AspS9I	GGNCC	2 cut(s)	653, 1071
AsuC2I	CCSGG	2 cut(s)	1137, 1138
AsuHPI	GGTGA	1 cut(s)	893
AvaI	CYCGRG	1 cut(s)	1136
AvaII	GGWCC	2 cut(s)	653, 1071
BauI	CACGAG	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	1115
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	3 cut(s)	127, 203, 271
BciT130I	CCWGG	2 cut(s)	568, 951
BcnI	CCSGG	2 cut(s)	1137, 1138
BcoDI	GTCTC	3 cut(s)	37, 636, 929
BfaI	CTAG	3 cut(s)	147, 174, 534
BfuAI	ACCTGC	1 cut(s)	1099
BglII	AGATCT	2 cut(s)	14, 574
BisI	GCNGC	2 cut(s)	564, 919
BlsI	GCNGC	2 cut(s)	565, 920
Bme1390I	CCNGG	4 cut(s)	568, 951, 1137, 1138
Bme18I	GGWCC	2 cut(s)	653, 1071
BmeT110I	CYCGRG	1 cut(s)	1136
BmgT120I	GGNCC	2 cut(s)	653, 1071
BmiI	GGNNCC	1 cut(s)	368
BmrFI	CCNGG	4 cut(s)	568, 951, 1137, 1138
BmsI	GCATC	2 cut(s)	790, 1235
BoxI	GACNNNNGTC	1 cut(s)	899
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	158, 1035
BpuMI	CCSGG	2 cut(s)	1137, 1138
BsaBI	GATNNNNATC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	929
BsaJI	CCNNGG	3 cut(s)	567, 1056, 1136
BsaWI	WCCGGW	1 cut(s)	1073
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 917, 1062, 1242
Bse1I	ACTGG	1 cut(s)	1022
Bse8I	GATNNNNATC	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	568, 951
BseDI	CCNNGG	3 cut(s)	567, 1056, 1136
BseGI	GGATG	1 cut(s)	1210
BseJI	GATNNNNATC	1 cut(s)	98
BseLI	CCNNNNNNNGG	4 cut(s)	200, 917, 1062, 1242
BseMII	CTCAG	3 cut(s)	89, 336, 414
BseNI	ACTGG	1 cut(s)	1022
BseRI	GAGGAG	3 cut(s)	379, 461, 1290
BseXI	GCAGC	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	1 cut(s)	1021
BsiHKAI	GWGCWC	1 cut(s)	1115
BsiHKCI	CYCGRG	1 cut(s)	1136
BsiSI	CCGG	2 cut(s)	1074, 1137
BslI	CCNNNNNNNGG	4 cut(s)	200, 917, 1062, 1242
BsmAI	GTCTC	3 cut(s)	37, 636, 929
BsmBI	CGTCTC	1 cut(s)	636
BsmI	GAATGC	2 cut(s)	751, 1199
BsnI	GGCC	1 cut(s)	1021
Bso31I	GGTCTC	1 cut(s)	929
BsoBI	CYCGRG	1 cut(s)	1136
Bsp1286I	GDGCHC	1 cut(s)	1115
Bsp143I	GATC	4 cut(s)	14, 133, 574, 1338
BspACI	CCGC	3 cut(s)	245, 918, 921
BspANI	GGCC	1 cut(s)	1021
BspCNI	CTCAG	3 cut(s)	88, 337, 413
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	1099
BspTNI	GGTCTC	1 cut(s)	929
BsrI	ACTGG	1 cut(s)	1022
BssECI	CCNNGG	3 cut(s)	567, 1056, 1136
BssMI	GATC	4 cut(s)	14, 133, 574, 1338
BssSI	CACGAG	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	1056
Bst2BI	CACGAG	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	568, 951
Bst4CI	ACNGT	6 cut(s)	89, 312, 358, 439, 508, 759
Bst6I	CTCTTC	2 cut(s)	687, 1308
BstAPI	GCANNNNNTGC	1 cut(s)	715
BstDEI	CTNAG	7 cut(s)	58, 75, 345, 400, 411, 1103, 1248
BstF5I	GGATG	1 cut(s)	1210
BstFNI	CGCG	1 cut(s)	672
BstHHI	GCGC	2 cut(s)	672, 937
BstKTI	GATC	4 cut(s)	17, 136, 577, 1341
BstMAI	GTCTC	3 cut(s)	37, 636, 929
BstMBI	GATC	4 cut(s)	14, 133, 574, 1338
BstMWI	GCNNNNNNNGC	2 cut(s)	715, 1205
BstNI	CCWGG	2 cut(s)	568, 951
BstPAI	GACNNNNGTC	1 cut(s)	899
BstSCI	CCNGG	4 cut(s)	566, 949, 1135, 1136
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	575
BstX2I	RGATCY	2 cut(s)	14, 574
BstXI	CCANNNNNNTGG	1 cut(s)	771
BstYI	RGATCY	2 cut(s)	14, 574
BsuRI	GGCC	1 cut(s)	1021
BtsCI	GGATG	1 cut(s)	1210
BtsIMutI	CAGTG	2 cut(s)	12, 755
BveI	ACCTGC	1 cut(s)	1099
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	2 cut(s)	672, 937
Cfr13I	GGNCC	2 cut(s)	653, 1071
Cfr9I	CCCGGG	1 cut(s)	1136
Csp6I	GTAC	3 cut(s)	308, 435, 724
CviAII	CATG	2 cut(s)	47, 1081
CviQI	GTAC	3 cut(s)	308, 435, 724
DdeI	CTNAG	7 cut(s)	58, 75, 345, 400, 411, 1103, 1248
DpnI	GATC	4 cut(s)	16, 135, 576, 1340
DpnII	GATC	4 cut(s)	14, 133, 574, 1338
Eam1104I	CTCTTC	2 cut(s)	687, 1308
EarI	CTCTTC	2 cut(s)	687, 1308
Eco130I	CCWWGG	1 cut(s)	1056
Eco31I	GGTCTC	1 cut(s)	929
Eco47I	GGWCC	2 cut(s)	653, 1071
Eco57I	CTGAAG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	1136
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	566, 949
EcoT14I	CCWWGG	1 cut(s)	1056
EcoT22I	ATGCAT	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	1056
Esp3I	CGTCTC	1 cut(s)	636
FaeI	CATG	2 cut(s)	50, 1084
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FatI	CATG	2 cut(s)	46, 1080
FauI	CCCGC	1 cut(s)	238
FauNDI	CATATG	1 cut(s)	871
FblI	GTMKAC	2 cut(s)	384, 840
Fnu4HI	GCNGC	2 cut(s)	564, 919
FokI	GGATG	1 cut(s)	1197
Fsp4HI	GCNGC	2 cut(s)	564, 919
FspBI	CTAG	3 cut(s)	147, 174, 534
GlaI	GCGC	2 cut(s)	671, 936
GluI	GCNGC	2 cut(s)	564, 919
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	1021
HapII	CCGG	2 cut(s)	1074, 1137
HhaI	GCGC	2 cut(s)	672, 937
Hin1II	CATG	2 cut(s)	50, 1084
Hin6I	GCGC	2 cut(s)	670, 935
HinP1I	GCGC	2 cut(s)	670, 935
HindIII	AAGCTT	2 cut(s)	24, 591
HinfI	GANTC	5 cut(s)	94, 170, 674, 963, 999
HpaII	CCGG	2 cut(s)	1074, 1137
HphI	GGTGA	1 cut(s)	893
Hpy166II	GTNNAC	3 cut(s)	385, 841, 986
Hpy188I	TCNGA	5 cut(s)	42, 296, 317, 1338, 1361
Hpy188III	TCNNGA	5 cut(s)	137, 160, 218, 264, 361
Hpy8I	GTNNAC	3 cut(s)	385, 841, 986
HpyAV	CCTTC	6 cut(s)	120, 291, 780, 938, 1224, 1332
HpyCH4III	ACNGT	6 cut(s)	89, 312, 358, 439, 508, 759
HpyCH4IV	ACGT	2 cut(s)	330, 1311
HpyCH4V	TGCA	6 cut(s)	751, 847, 978, 1094, 1199, 1226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	715, 1205
HpyF3I	CTNAG	7 cut(s)	58, 75, 345, 400, 411, 1103, 1248
HpySE526I	ACGT	2 cut(s)	330, 1311
Hsp92II	CATG	2 cut(s)	50, 1084
HspAI	GCGC	2 cut(s)	670, 935
Kzo9I	GATC	4 cut(s)	14, 133, 574, 1338
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	2 cut(s)	790, 1235
MaeI	CTAG	3 cut(s)	147, 174, 534
MaeII	ACGT	2 cut(s)	330, 1311
MaeIII	GTNAC	2 cut(s)	358, 454
MalI	GATC	4 cut(s)	16, 135, 576, 1340
MboI	GATC	4 cut(s)	14, 133, 574, 1338
MboII	GAAGA	4 cut(s)	44, 283, 674, 1295
MflI	RGATCY	2 cut(s)	14, 574
MhlI	GDGCHC	1 cut(s)	1115
MluCI	AATT	5 cut(s)	461, 604, 848, 863, 1095
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	7 cut(s)	357, 439, 439, 666, 824, 877, 1311
Mph1103I	ATGCAT	1 cut(s)	753
MroXI	GAANNNNTTC	2 cut(s)	36, 1155
MseI	TTAA	4 cut(s)	84, 470, 866, 1143
MslI	CAYNNNNRTG	1 cut(s)	1007
MspI	CCGG	2 cut(s)	1074, 1137
MspR9I	CCNGG	4 cut(s)	568, 951, 1137, 1138
Mva1269I	GAATGC	2 cut(s)	751, 1199
MvaI	CCWGG	2 cut(s)	568, 951
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	2 cut(s)	715, 1205
NciI	CCSGG	2 cut(s)	1137, 1138
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	4 cut(s)	14, 133, 574, 1338
NlaIII	CATG	2 cut(s)	50, 1084
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	2 cut(s)	751, 1199
PdmI	GAANNNNTTC	2 cut(s)	36, 1155
PfeI	GAWTC	5 cut(s)	94, 170, 674, 963, 999
PfoI	TCCNGGA	1 cut(s)	949
PkrI	GCNGC	2 cut(s)	565, 920
PshAI	GACNNNNGTC	1 cut(s)	899
Psp1406I	AACGTT	1 cut(s)	1311
Psp6I	CCWGG	2 cut(s)	566, 949
PspGI	CCWGG	2 cut(s)	566, 949
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	653, 1071
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	14, 574
RsaI	GTAC	3 cut(s)	309, 436, 725
RsaNI	GTAC	3 cut(s)	308, 435, 724
RseI	CAYNNNNRTG	1 cut(s)	1007
SaqAI	TTAA	4 cut(s)	84, 470, 866, 1143
SatI	GCNGC	2 cut(s)	564, 919
Sau3AI	GATC	4 cut(s)	14, 133, 574, 1338
Sau96I	GGNCC	2 cut(s)	653, 1071
ScrFI	CCNGG	4 cut(s)	568, 951, 1137, 1138
SduI	GDGCHC	1 cut(s)	1115
SfaNI	GCATC	2 cut(s)	790, 1235
SinI	GGWCC	2 cut(s)	653, 1071
SmaI	CCCGGG	1 cut(s)	1138
SmiMI	CAYNNNNRTG	1 cut(s)	1007
SmlI	CTYRAG	2 cut(s)	137, 1050
SmoI	CTYRAG	2 cut(s)	137, 1050
Sse9I	AATT	5 cut(s)	461, 604, 848, 863, 1095
SsiI	CCGC	3 cut(s)	245, 918, 921
SspMI	CTAG	3 cut(s)	147, 174, 534
StyD4I	CCNGG	4 cut(s)	566, 949, 1135, 1136
StyI	CCWWGG	1 cut(s)	1056
TaaI	ACNGT	6 cut(s)	89, 312, 358, 439, 508, 759
TaiI	ACGT	2 cut(s)	333, 1314
TaqI	TCGA	5 cut(s)	122, 465, 784, 1318, 1353
TaqII	GACCGA	2 cut(s)	81, 1233
TasI	AATT	5 cut(s)	461, 604, 848, 863, 1095
TauI	GCSGC	1 cut(s)	921
TfiI	GAWTC	5 cut(s)	94, 170, 674, 963, 999
Tru1I	TTAA	4 cut(s)	84, 470, 866, 1143
Tru9I	TTAA	4 cut(s)	84, 470, 866, 1143
TscAI	CASTG	2 cut(s)	12, 762
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	102, 543, 686
TspGWI	ACGGA	1 cut(s)	741
TspMI	CCCGGG	1 cut(s)	1136
TspRI	CASTG	2 cut(s)	12, 762
VpaK11BI	GGWCC	2 cut(s)	653, 1071
XapI	RAATTY	2 cut(s)	461, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmaI	CCCGGG	1 cut(s)	1136
XmiI	GTMKAC	2 cut(s)	384, 840
XmnI	GAANNNNTTC	2 cut(s)	36, 1155
XspI	CTAG	3 cut(s)	147, 174, 534
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.